HEADER TRANSFERASE 10-APR-09 3H0P TITLE 2.0 ANGSTROM CRYSTAL STRUCTURE OF AN ACYL CARRIER PROTEIN S- TITLE 2 MALONYLTRANSFERASE FROM SALMONELLA TYPHIMURIUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-MALONYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE, MCT; COMPND 5 EC: 2.3.1.39; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: FABD, STM1194; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ACYL CARRIER PROTEIN, S-MALONYLTRANSFERASE, IDP00956, FABD, FATTY KEYWDS 2 ACID BIOSYNTHESIS, LIPID SYNTHESIS, TRANSFERASE, STRUCTURAL KEYWDS 3 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 4 CSGID EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,T.SKARINA,O.ONOPRIYENKO,S.N.PETERSON,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID),CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 4 (CSGID) REVDAT 6 22-NOV-23 3H0P 1 REMARK REVDAT 5 06-SEP-23 3H0P 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3H0P 1 REMARK REVDAT 3 13-JUL-11 3H0P 1 VERSN REVDAT 2 27-OCT-09 3H0P 1 AUTHOR REVDAT 1 21-APR-09 3H0P 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,T.SKARINA,O.ONOPRIYENKO,S.N.PETERSON, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.0 ANGSTROM CRYSTAL STRUCTURE OF AN ACYL CARRIER PROTEIN JRNL TITL 2 S-MALONYLTRANSFERASE FROM SALMONELLA TYPHIMURIUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 39714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2772 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 443 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.152 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4708 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3035 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6429 ; 1.260 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7498 ; 0.830 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 629 ; 2.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;33.865 ;25.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 744 ; 9.767 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 9.818 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 745 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5351 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 855 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3113 ; 1.046 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1260 ; 0.333 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4979 ; 1.705 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1595 ; 3.076 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1450 ; 4.751 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8071 8.9873 38.7881 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0716 REMARK 3 T33: 0.0170 T12: -0.0019 REMARK 3 T13: 0.0186 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.8047 L22: 2.4767 REMARK 3 L33: 1.3660 L12: -0.0991 REMARK 3 L13: 0.1597 L23: 0.2521 REMARK 3 S TENSOR REMARK 3 S11: 0.1008 S12: -0.1854 S13: -0.0200 REMARK 3 S21: 0.0586 S22: -0.1764 S23: 0.0850 REMARK 3 S31: 0.0996 S32: -0.1647 S33: 0.0756 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5769 4.1508 34.9113 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: 0.0612 REMARK 3 T33: 0.0973 T12: 0.0141 REMARK 3 T13: 0.0141 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.0315 L22: 4.4660 REMARK 3 L33: 1.6875 L12: 1.1853 REMARK 3 L13: 0.7097 L23: 0.4314 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.1175 S13: -0.1328 REMARK 3 S21: -0.1188 S22: 0.0624 S23: -0.4405 REMARK 3 S31: 0.1149 S32: 0.1916 S33: -0.0969 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1668 12.7716 34.8175 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0714 REMARK 3 T33: 0.0213 T12: 0.0095 REMARK 3 T13: 0.0148 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.4557 L22: 2.7991 REMARK 3 L33: 0.5416 L12: -0.0392 REMARK 3 L13: 0.0601 L23: 0.5772 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: -0.1200 S13: 0.0068 REMARK 3 S21: -0.1734 S22: -0.0366 S23: -0.1769 REMARK 3 S31: -0.0652 S32: -0.0290 S33: 0.0142 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8417 28.1456 42.4422 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0100 REMARK 3 T33: 0.0245 T12: -0.0077 REMARK 3 T13: -0.0015 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.6979 L22: 2.0281 REMARK 3 L33: 2.0329 L12: -0.4112 REMARK 3 L13: -0.1959 L23: 0.8282 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: -0.0481 S13: 0.0972 REMARK 3 S21: -0.0363 S22: -0.0770 S23: -0.0046 REMARK 3 S31: 0.0161 S32: -0.0432 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9886 11.1988 37.1651 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.0630 REMARK 3 T33: 0.0681 T12: -0.0071 REMARK 3 T13: -0.0210 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.5470 L22: 3.5788 REMARK 3 L33: 0.9752 L12: -0.4348 REMARK 3 L13: -0.3314 L23: 0.1025 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: -0.0255 S13: -0.0833 REMARK 3 S21: -0.1415 S22: -0.1813 S23: 0.4204 REMARK 3 S31: -0.0218 S32: -0.0664 S33: 0.1433 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0664 12.8512 78.0281 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.0202 REMARK 3 T33: 0.0220 T12: 0.0003 REMARK 3 T13: 0.0016 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.0386 L22: 2.8080 REMARK 3 L33: 1.1853 L12: 0.1478 REMARK 3 L13: 0.1128 L23: 0.7474 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.0949 S13: 0.1437 REMARK 3 S21: -0.0739 S22: -0.0765 S23: -0.0069 REMARK 3 S31: -0.0880 S32: -0.0054 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 42 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8216 6.8927 83.0731 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: 0.0396 REMARK 3 T33: 0.1481 T12: 0.0052 REMARK 3 T13: -0.0337 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 6.1311 L22: 2.4805 REMARK 3 L33: 2.4311 L12: -1.7939 REMARK 3 L13: 0.6638 L23: -0.1528 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: 0.0008 S13: 0.2239 REMARK 3 S21: 0.1386 S22: 0.1308 S23: -0.5058 REMARK 3 S31: -0.0010 S32: 0.2186 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5926 5.0827 81.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0388 REMARK 3 T33: 0.0154 T12: 0.0033 REMARK 3 T13: -0.0089 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.3373 L22: 2.6400 REMARK 3 L33: 0.7693 L12: -0.0453 REMARK 3 L13: -0.0253 L23: 0.5764 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: 0.0229 S13: -0.0398 REMARK 3 S21: 0.1248 S22: -0.0658 S23: -0.1163 REMARK 3 S31: -0.0157 S32: -0.0079 S33: 0.0433 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1320 -10.7148 69.9309 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0170 REMARK 3 T33: 0.0166 T12: 0.0152 REMARK 3 T13: 0.0083 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.7325 L22: 1.6651 REMARK 3 L33: 1.7311 L12: 0.2670 REMARK 3 L13: 0.1094 L23: 1.0404 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: 0.0766 S13: -0.0681 REMARK 3 S21: -0.0552 S22: -0.0711 S23: 0.0038 REMARK 3 S31: -0.0292 S32: -0.0739 S33: 0.0286 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 233 B 309 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6934 4.5725 79.1235 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0434 REMARK 3 T33: 0.0317 T12: 0.0030 REMARK 3 T13: 0.0097 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.7310 L22: 2.8276 REMARK 3 L33: 0.9873 L12: 1.0278 REMARK 3 L13: 0.4419 L23: 0.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: -0.0404 S13: 0.0351 REMARK 3 S21: 0.0993 S22: -0.1039 S23: 0.1511 REMARK 3 S31: 0.0228 S32: -0.1033 S33: 0.0691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : SI {1,1,1} REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41818 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: PDB ENTRY 2G2Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 0.3M NACL, 10MM REMARK 280 HEPES (PH 7.5); SCREEN SOLUTION: 1M LITHIUM SULPHATE, 0.1M BIS- REMARK 280 TRIS-PROPANE HCL (PH 7.0), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.08450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 92 -101.75 56.34 REMARK 500 VAL A 156 117.45 -160.79 REMARK 500 SER B 92 -100.61 55.73 REMARK 500 VAL B 275 79.91 -101.24 REMARK 500 LYS B 279 32.18 -143.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MLA RELATED DB: PDB REMARK 900 THE ESCHERICHIA COLI MALONYL-COA:ACYL CARRIER PROTEIN TRANSACYLASE REMARK 900 AT 1.5-ANGSTROMS RESOLUTION. REMARK 900 RELATED ID: IDP00956 RELATED DB: TARGETDB DBREF 3H0P A 1 309 UNP O85140 FABD_SALTY 1 309 DBREF 3H0P B 1 309 UNP O85140 FABD_SALTY 1 309 SEQADV 3H0P SER A -2 UNP O85140 EXPRESSION TAG SEQADV 3H0P ASN A -1 UNP O85140 EXPRESSION TAG SEQADV 3H0P ALA A 0 UNP O85140 EXPRESSION TAG SEQADV 3H0P SER B -2 UNP O85140 EXPRESSION TAG SEQADV 3H0P ASN B -1 UNP O85140 EXPRESSION TAG SEQADV 3H0P ALA B 0 UNP O85140 EXPRESSION TAG SEQRES 1 A 312 SER ASN ALA MSE THR GLN PHE ALA PHE VAL PHE PRO GLY SEQRES 2 A 312 GLN GLY SER GLN SER VAL GLY MSE LEU ALA GLU MSE ALA SEQRES 3 A 312 ALA ASN TYR PRO ILE VAL GLU GLU THR PHE ALA GLU ALA SEQRES 4 A 312 SER ALA ALA LEU GLY TYR ASP LEU TRP ALA LEU THR GLN SEQRES 5 A 312 GLN GLY PRO ALA GLU GLU LEU ASN LYS THR TRP GLN THR SEQRES 6 A 312 GLN PRO ALA LEU LEU THR ALA SER VAL ALA LEU TRP ARG SEQRES 7 A 312 VAL TRP GLN GLN GLN GLY GLY LYS MSE PRO ALA LEU MSE SEQRES 8 A 312 ALA GLY HIS SER LEU GLY GLU TYR SER ALA LEU VAL CYS SEQRES 9 A 312 ALA GLY VAL ILE ASN PHE ALA ASP ALA VAL ARG LEU VAL SEQRES 10 A 312 GLU MSE ARG GLY LYS PHE MSE GLN GLU ALA VAL PRO GLU SEQRES 11 A 312 GLY THR GLY GLY MSE SER ALA ILE ILE GLY LEU ASP ASP SEQRES 12 A 312 ALA SER ILE ALA LYS ALA CYS GLU GLU SER ALA GLU GLY SEQRES 13 A 312 GLN VAL VAL SER PRO VAL ASN PHE ASN SER PRO GLY GLN SEQRES 14 A 312 VAL VAL ILE ALA GLY HIS LYS GLU ALA VAL GLU ARG ALA SEQRES 15 A 312 GLY ALA ALA CYS LYS ALA ALA GLY ALA LYS ARG ALA LEU SEQRES 16 A 312 PRO LEU PRO VAL SER VAL PRO SER HIS CYS ALA LEU MSE SEQRES 17 A 312 LYS PRO ALA ALA ASP LYS LEU ALA VAL GLU LEU ALA LYS SEQRES 18 A 312 ILE THR PHE SER ALA PRO THR VAL PRO VAL VAL ASN ASN SEQRES 19 A 312 VAL ASP VAL LYS CYS GLU THR ASP ALA ALA ALA ILE ARG SEQRES 20 A 312 ASP ALA LEU VAL ARG GLN LEU TYR ASN PRO VAL GLN TRP SEQRES 21 A 312 THR LYS SER VAL GLU PHE ILE ALA ALA GLN GLY VAL GLU SEQRES 22 A 312 HIS LEU TYR GLU VAL GLY PRO GLY LYS VAL LEU THR GLY SEQRES 23 A 312 LEU THR LYS ARG ILE VAL ASP THR LEU THR ALA SER ALA SEQRES 24 A 312 LEU ASN GLU PRO ALA ALA LEU SER ALA ALA LEU THR GLN SEQRES 1 B 312 SER ASN ALA MSE THR GLN PHE ALA PHE VAL PHE PRO GLY SEQRES 2 B 312 GLN GLY SER GLN SER VAL GLY MSE LEU ALA GLU MSE ALA SEQRES 3 B 312 ALA ASN TYR PRO ILE VAL GLU GLU THR PHE ALA GLU ALA SEQRES 4 B 312 SER ALA ALA LEU GLY TYR ASP LEU TRP ALA LEU THR GLN SEQRES 5 B 312 GLN GLY PRO ALA GLU GLU LEU ASN LYS THR TRP GLN THR SEQRES 6 B 312 GLN PRO ALA LEU LEU THR ALA SER VAL ALA LEU TRP ARG SEQRES 7 B 312 VAL TRP GLN GLN GLN GLY GLY LYS MSE PRO ALA LEU MSE SEQRES 8 B 312 ALA GLY HIS SER LEU GLY GLU TYR SER ALA LEU VAL CYS SEQRES 9 B 312 ALA GLY VAL ILE ASN PHE ALA ASP ALA VAL ARG LEU VAL SEQRES 10 B 312 GLU MSE ARG GLY LYS PHE MSE GLN GLU ALA VAL PRO GLU SEQRES 11 B 312 GLY THR GLY GLY MSE SER ALA ILE ILE GLY LEU ASP ASP SEQRES 12 B 312 ALA SER ILE ALA LYS ALA CYS GLU GLU SER ALA GLU GLY SEQRES 13 B 312 GLN VAL VAL SER PRO VAL ASN PHE ASN SER PRO GLY GLN SEQRES 14 B 312 VAL VAL ILE ALA GLY HIS LYS GLU ALA VAL GLU ARG ALA SEQRES 15 B 312 GLY ALA ALA CYS LYS ALA ALA GLY ALA LYS ARG ALA LEU SEQRES 16 B 312 PRO LEU PRO VAL SER VAL PRO SER HIS CYS ALA LEU MSE SEQRES 17 B 312 LYS PRO ALA ALA ASP LYS LEU ALA VAL GLU LEU ALA LYS SEQRES 18 B 312 ILE THR PHE SER ALA PRO THR VAL PRO VAL VAL ASN ASN SEQRES 19 B 312 VAL ASP VAL LYS CYS GLU THR ASP ALA ALA ALA ILE ARG SEQRES 20 B 312 ASP ALA LEU VAL ARG GLN LEU TYR ASN PRO VAL GLN TRP SEQRES 21 B 312 THR LYS SER VAL GLU PHE ILE ALA ALA GLN GLY VAL GLU SEQRES 22 B 312 HIS LEU TYR GLU VAL GLY PRO GLY LYS VAL LEU THR GLY SEQRES 23 B 312 LEU THR LYS ARG ILE VAL ASP THR LEU THR ALA SER ALA SEQRES 24 B 312 LEU ASN GLU PRO ALA ALA LEU SER ALA ALA LEU THR GLN MODRES 3H0P MSE A 18 MET SELENOMETHIONINE MODRES 3H0P MSE A 22 MET SELENOMETHIONINE MODRES 3H0P MSE A 84 MET SELENOMETHIONINE MODRES 3H0P MSE A 88 MET SELENOMETHIONINE MODRES 3H0P MSE A 116 MET SELENOMETHIONINE MODRES 3H0P MSE A 121 MET SELENOMETHIONINE MODRES 3H0P MSE A 132 MET SELENOMETHIONINE MODRES 3H0P MSE A 205 MET SELENOMETHIONINE MODRES 3H0P MSE B 1 MET SELENOMETHIONINE MODRES 3H0P MSE B 18 MET SELENOMETHIONINE MODRES 3H0P MSE B 22 MET SELENOMETHIONINE MODRES 3H0P MSE B 84 MET SELENOMETHIONINE MODRES 3H0P MSE B 88 MET SELENOMETHIONINE MODRES 3H0P MSE B 116 MET SELENOMETHIONINE MODRES 3H0P MSE B 121 MET SELENOMETHIONINE MODRES 3H0P MSE B 132 MET SELENOMETHIONINE MODRES 3H0P MSE B 205 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 22 8 HET MSE A 84 8 HET MSE A 88 8 HET MSE A 116 8 HET MSE A 121 8 HET MSE A 132 8 HET MSE A 205 8 HET MSE B 1 8 HET MSE B 18 8 HET MSE B 22 8 HET MSE B 84 8 HET MSE B 88 8 HET MSE B 116 8 HET MSE B 121 8 HET MSE B 132 8 HET MSE B 205 8 HET SO4 A 310 5 HET SO4 B 310 5 HET SO4 B 311 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 17(C5 H11 N O2 SE) FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *443(H2 O) HELIX 1 1 LEU A 19 TYR A 26 1 8 HELIX 2 2 PRO A 27 GLY A 41 1 15 HELIX 3 3 ASP A 43 GLY A 51 1 9 HELIX 4 4 PRO A 52 ASN A 57 1 6 HELIX 5 5 LYS A 58 GLN A 80 1 23 HELIX 6 6 SER A 92 ALA A 102 1 11 HELIX 7 7 ASN A 106 ALA A 124 1 19 HELIX 8 8 ASP A 139 GLU A 152 1 14 HELIX 9 9 LYS A 173 ALA A 186 1 14 HELIX 10 10 CYS A 202 LEU A 204 5 3 HELIX 11 11 MSE A 205 LYS A 218 1 14 HELIX 12 12 ASP A 239 LEU A 251 1 13 HELIX 13 13 GLN A 256 GLN A 267 1 12 HELIX 14 14 LYS A 279 VAL A 289 1 11 HELIX 15 15 GLU A 299 THR A 308 1 10 HELIX 16 16 LEU B 19 TYR B 26 1 8 HELIX 17 17 PRO B 27 GLY B 41 1 15 HELIX 18 18 ASP B 43 GLY B 51 1 9 HELIX 19 19 PRO B 52 ASN B 57 1 6 HELIX 20 20 LYS B 58 GLN B 80 1 23 HELIX 21 21 SER B 92 ALA B 102 1 11 HELIX 22 22 ASN B 106 ALA B 124 1 19 HELIX 23 23 ASP B 139 GLU B 152 1 14 HELIX 24 24 LYS B 173 ALA B 186 1 14 HELIX 25 25 CYS B 202 LEU B 204 5 3 HELIX 26 26 MSE B 205 ALA B 217 1 13 HELIX 27 27 ASP B 239 LEU B 251 1 13 HELIX 28 28 GLN B 256 GLN B 267 1 12 HELIX 29 29 LYS B 279 VAL B 289 1 11 HELIX 30 30 GLU B 299 THR B 308 1 10 SHEET 1 A 4 MSE A 88 GLY A 90 0 SHEET 2 A 4 PHE A 4 PHE A 8 1 N PHE A 8 O ALA A 89 SHEET 3 A 4 HIS A 271 GLU A 274 1 O TYR A 273 N VAL A 7 SHEET 4 A 4 THR A 293 ALA A 296 1 O SER A 295 N GLU A 274 SHEET 1 B 4 VAL A 156 SER A 163 0 SHEET 2 B 4 GLN A 166 HIS A 172 -1 O VAL A 168 N VAL A 159 SHEET 3 B 4 GLY A 130 ILE A 136 -1 N SER A 133 O ILE A 169 SHEET 4 B 4 ARG A 190 PRO A 193 -1 O LEU A 192 N ALA A 134 SHEET 1 C 2 VAL A 229 ASN A 230 0 SHEET 2 C 2 LYS A 235 CYS A 236 -1 O LYS A 235 N ASN A 230 SHEET 1 D 4 MSE B 88 GLY B 90 0 SHEET 2 D 4 PHE B 4 PHE B 8 1 N PHE B 8 O ALA B 89 SHEET 3 D 4 HIS B 271 GLU B 274 1 O TYR B 273 N ALA B 5 SHEET 4 D 4 THR B 293 ALA B 296 1 O SER B 295 N GLU B 274 SHEET 1 E 4 VAL B 156 SER B 163 0 SHEET 2 E 4 GLN B 166 HIS B 172 -1 O VAL B 168 N VAL B 159 SHEET 3 E 4 GLY B 130 ILE B 136 -1 N SER B 133 O ILE B 169 SHEET 4 E 4 ARG B 190 PRO B 193 -1 O ARG B 190 N ILE B 136 SHEET 1 F 2 VAL B 229 ASN B 230 0 SHEET 2 F 2 LYS B 235 CYS B 236 -1 O LYS B 235 N ASN B 230 LINK C GLY A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N LEU A 19 1555 1555 1.34 LINK C GLU A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N ALA A 23 1555 1555 1.33 LINK C LYS A 83 N MSE A 84 1555 1555 1.33 LINK C MSE A 84 N PRO A 85 1555 1555 1.35 LINK C LEU A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N ALA A 89 1555 1555 1.34 LINK C GLU A 115 N MSE A 116 1555 1555 1.33 LINK C MSE A 116 N ARG A 117 1555 1555 1.33 LINK C PHE A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N GLN A 122 1555 1555 1.33 LINK C GLY A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N SER A 133 1555 1555 1.34 LINK C LEU A 204 N MSE A 205 1555 1555 1.34 LINK C MSE A 205 N LYS A 206 1555 1555 1.34 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C GLY B 17 N MSE B 18 1555 1555 1.33 LINK C MSE B 18 N LEU B 19 1555 1555 1.33 LINK C GLU B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N ALA B 23 1555 1555 1.32 LINK C LYS B 83 N MSE B 84 1555 1555 1.33 LINK C MSE B 84 N PRO B 85 1555 1555 1.35 LINK C LEU B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N ALA B 89 1555 1555 1.33 LINK C GLU B 115 N MSE B 116 1555 1555 1.33 LINK C MSE B 116 N ARG B 117 1555 1555 1.32 LINK C PHE B 120 N MSE B 121 1555 1555 1.32 LINK C MSE B 121 N GLN B 122 1555 1555 1.33 LINK C GLY B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N SER B 133 1555 1555 1.31 LINK C LEU B 204 N MSE B 205 1555 1555 1.34 LINK C MSE B 205 N LYS B 206 1555 1555 1.34 CISPEP 1 GLY A 51 PRO A 52 0 0.45 CISPEP 2 GLY B 51 PRO B 52 0 0.24 SITE 1 AC1 6 SER A 15 VAL A 16 ALA A 53 HOH A 405 SITE 2 AC1 6 HOH A 438 HOH A 506 SITE 1 AC2 2 TYR B 252 ASN B 253 SITE 1 AC3 3 SER B 15 VAL B 16 HOH B 400 CRYST1 46.589 92.169 77.075 90.00 92.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021464 0.000000 0.001063 0.00000 SCALE2 0.000000 0.010850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012990 0.00000