HEADER REPLICATION/DNA 10-APR-09 3H15 TITLE CRYSTAL STRUCTURE OF REPLICATION INITIATION FACTOR MCM10-ID BOUND TO TITLE 2 SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MCM10 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 230-427, ZINC-FINGER DOMAIN, INTERNAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*C)-3'; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: MCM10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS OB-FOLD, ZINC FINGER, CCCH, DNA REPLICATION, SSDNA, DNA-BINDING, KEYWDS 2 METAL-BINDING, NUCLEUS, ZINC-FINGER, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.M.WARREN,B.F.EICHMAN REVDAT 4 06-SEP-23 3H15 1 REMARK REVDAT 3 25-SEP-13 3H15 1 REMARK VERSN REVDAT 2 15-SEP-09 3H15 1 JRNL REVDAT 1 14-JUL-09 3H15 0 JRNL AUTH E.M.WARREN,H.HUANG,E.FANNING,W.J.CHAZIN,B.F.EICHMAN JRNL TITL PHYSICAL INTERACTIONS BETWEEN MCM10, DNA, AND DNA POLYMERASE JRNL TITL 2 {ALPHA}. JRNL REF J.BIOL.CHEM. V. 284 24662 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19608746 JRNL DOI 10.1074/JBC.M109.020438 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 2009_02_15_2320_3) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 8222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1403 - 3.9129 0.98 2821 141 0.1761 0.1936 REMARK 3 2 3.9129 - 3.1065 1.00 2780 142 0.1991 0.2835 REMARK 3 3 3.1065 - 2.7200 0.80 2233 105 0.2759 0.3178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 84.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 230:241) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0938 14.0571 -12.5387 REMARK 3 T TENSOR REMARK 3 T11: 0.7732 T22: 0.7137 REMARK 3 T33: 0.3774 T12: -0.1037 REMARK 3 T13: 0.0662 T23: -0.2563 REMARK 3 L TENSOR REMARK 3 L11: 1.3060 L22: 0.8136 REMARK 3 L33: 0.8862 L12: -1.0275 REMARK 3 L13: -0.9698 L23: 0.6661 REMARK 3 S TENSOR REMARK 3 S11: 0.4114 S12: 0.3055 S13: -0.2104 REMARK 3 S21: -1.0105 S22: -0.3220 S23: 0.0632 REMARK 3 S31: -0.7942 S32: 0.0318 S33: -0.2111 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 242:260) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4420 16.8317 -5.8935 REMARK 3 T TENSOR REMARK 3 T11: 0.3469 T22: 0.3300 REMARK 3 T33: 0.4780 T12: 0.0387 REMARK 3 T13: -0.0726 T23: -0.1042 REMARK 3 L TENSOR REMARK 3 L11: 2.1947 L22: 2.2130 REMARK 3 L33: 0.9767 L12: 0.1964 REMARK 3 L13: 1.0142 L23: 0.0403 REMARK 3 S TENSOR REMARK 3 S11: 0.3709 S12: 0.4991 S13: -0.4978 REMARK 3 S21: 0.1263 S22: 0.2156 S23: -1.0669 REMARK 3 S31: 0.0072 S32: 0.7940 S33: -0.5073 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 261:300) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8085 24.7172 5.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.1865 T22: 0.1992 REMARK 3 T33: 0.3095 T12: 0.0742 REMARK 3 T13: -0.0468 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.1540 L22: 1.0239 REMARK 3 L33: 3.4440 L12: -0.9096 REMARK 3 L13: -0.5978 L23: -1.0438 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.0111 S13: -0.2570 REMARK 3 S21: 0.1474 S22: 0.2135 S23: 0.1304 REMARK 3 S31: -0.0454 S32: -0.0259 S33: -0.2422 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 301:371) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2679 32.2085 2.0463 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.2894 REMARK 3 T33: 0.1860 T12: 0.0649 REMARK 3 T13: -0.0084 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 1.8291 L22: 3.0886 REMARK 3 L33: 2.1696 L12: -0.2717 REMARK 3 L13: -0.0112 L23: 0.3192 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: -0.3878 S13: 0.2198 REMARK 3 S21: 0.0936 S22: 0.1624 S23: 0.2002 REMARK 3 S31: -0.1285 S32: -0.0411 S33: 0.1444 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 372:500) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2125 25.9130 -17.8934 REMARK 3 T TENSOR REMARK 3 T11: 0.4646 T22: 0.6299 REMARK 3 T33: 0.3588 T12: 0.1003 REMARK 3 T13: -0.1584 T23: -0.1606 REMARK 3 L TENSOR REMARK 3 L11: 3.3915 L22: 1.4118 REMARK 3 L33: 0.0460 L12: 0.4014 REMARK 3 L13: -0.4295 L23: -0.2874 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: 1.1121 S13: -0.1807 REMARK 3 S21: -0.2693 S22: 0.1182 S23: -0.1810 REMARK 3 S31: -0.3485 S32: -0.2038 S33: -0.0296 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 9:14) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4141 41.9531 8.8052 REMARK 3 T TENSOR REMARK 3 T11: 1.2883 T22: 1.1590 REMARK 3 T33: 1.4063 T12: 0.5913 REMARK 3 T13: 0.6995 T23: -0.2553 REMARK 3 L TENSOR REMARK 3 L11: 5.1447 L22: 0.7766 REMARK 3 L33: 8.2020 L12: 0.7658 REMARK 3 L13: -5.4745 L23: 0.4387 REMARK 3 S TENSOR REMARK 3 S11: 0.7788 S12: -1.4481 S13: 1.5889 REMARK 3 S21: 0.3654 S22: 0.4778 S23: 0.1779 REMARK 3 S31: -1.8573 S32: 0.8093 S33: -1.3955 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-08; 09-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 21-ID-D; X29A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857; 1.00 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : BE LENSES/DIAMOND LAUE MONO; REMARK 200 SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; ADSC REMARK 200 QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 11.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30500 REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3EBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TAPS PH 9.0, 17% PEG 3350 , REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.38633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.77267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.77267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.38633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 230 REMARK 465 PRO A 231 REMARK 465 VAL A 232 REMARK 465 GLY A 233 REMARK 465 GLN A 234 REMARK 465 GLN A 408 REMARK 465 ALA A 409 REMARK 465 GLN A 410 REMARK 465 TYR A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 465 VAL A 414 REMARK 465 SER A 415 REMARK 465 SER A 416 REMARK 465 LYS A 417 REMARK 465 ARG A 418 REMARK 465 ALA A 419 REMARK 465 ASP A 420 REMARK 465 LEU A 421 REMARK 465 GLN A 422 REMARK 465 SER A 423 REMARK 465 SER A 424 REMARK 465 TYR A 425 REMARK 465 SER A 426 REMARK 465 GLY A 427 REMARK 465 DC B 12 REMARK 465 DC B 13 REMARK 465 DC B 14 REMARK 465 DC B 15 REMARK 465 DC B 16 REMARK 465 DC B 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 279 CE NZ REMARK 470 LYS A 353 CD CE NZ REMARK 470 ASN A 387 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 237 CG REMARK 480 MET A 260 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 10 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 DC B 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 237 148.19 1.46 REMARK 500 THR A 277 6.61 -69.54 REMARK 500 LYS A 279 46.86 -153.62 REMARK 500 PRO A 297 -164.19 -79.01 REMARK 500 SER A 299 -75.22 -156.30 REMARK 500 SER A 300 13.77 54.35 REMARK 500 ASN A 301 89.59 -59.12 REMARK 500 ASN A 302 -20.63 86.46 REMARK 500 LYS A 304 89.06 155.38 REMARK 500 LEU A 314 8.58 58.44 REMARK 500 LEU A 317 -4.38 -57.37 REMARK 500 LYS A 331 -38.77 -36.85 REMARK 500 ASN A 365 128.02 -173.67 REMARK 500 LYS A 385 103.49 -54.54 REMARK 500 LYS A 386 67.54 -36.83 REMARK 500 ASN A 387 -73.35 -178.97 REMARK 500 ASP A 389 150.71 3.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 391 SG 107.4 REMARK 620 3 CYS A 403 SG 100.7 121.1 REMARK 620 4 HIS A 406 ND1 91.4 122.0 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBE RELATED DB: PDB REMARK 900 UNLIGANDED FORM OF MCM10-ID DBREF 3H15 A 230 427 UNP Q5EAW4 MCM10_XENLA 230 427 DBREF 3H15 B 9 17 PDB 3H15 3H15 9 17 SEQRES 1 A 198 SER PRO VAL GLY GLN GLN TYR HIS VAL GLU LYS PHE SER SEQRES 2 A 198 GLY LEU ARG ILE ARG LYS PRO ARG VAL SER SER SER GLU SEQRES 3 A 198 MET GLU ARG LYS MET ASN GLY ARG LYS LEU ILE ARG LEU SEQRES 4 A 198 ALA GLN LEU GLN ASN LYS ILE ALA THR GLU LYS LEU GLU SEQRES 5 A 198 GLU GLU ASP TRP VAL THR PHE GLY VAL ILE VAL LYS LYS SEQRES 6 A 198 ILE THR PRO GLN SER SER ASN ASN GLY LYS THR PHE SER SEQRES 7 A 198 ILE TRP ARG LEU ASN ASP LEU LYS ASP LEU ASP LYS TYR SEQRES 8 A 198 ILE SER LEU PHE LEU PHE GLY ASP VAL HIS LYS GLU HIS SEQRES 9 A 198 TRP LYS THR ASP GLN GLY THR VAL ILE GLY LEU LEU ASN SEQRES 10 A 198 ALA ASN PRO MET LYS PRO LYS GLU GLY THR ASP GLU VAL SEQRES 11 A 198 CYS LEU SER VAL ASP ASN PRO GLN LYS VAL LEU LEU MET SEQRES 12 A 198 GLY ASP ALA VAL ASP LEU GLY THR CYS LYS ALA ARG LYS SEQRES 13 A 198 LYS ASN GLY ASP PRO CYS THR GLN MET VAL ASN LEU ASN SEQRES 14 A 198 ASP CYS GLU TYR CYS GLN TYR HIS VAL GLN ALA GLN TYR SEQRES 15 A 198 LYS LYS VAL SER SER LYS ARG ALA ASP LEU GLN SER SER SEQRES 16 A 198 TYR SER GLY SEQRES 1 B 9 DC DC DC DC DC DC DC DC DC HET ZN A 500 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *15(H2 O) HELIX 1 1 SER A 252 ASN A 261 1 10 HELIX 2 2 ARG A 267 ALA A 269 5 3 HELIX 3 3 GLN A 270 THR A 277 1 8 HELIX 4 4 PHE A 326 TRP A 334 1 9 HELIX 5 5 ASN A 365 GLN A 367 5 3 SHEET 1 A 5 ILE A 246 ARG A 247 0 SHEET 2 A 5 VAL A 369 ALA A 375 -1 O ASP A 374 N ARG A 247 SHEET 3 A 5 THR A 340 LEU A 345 -1 N VAL A 341 O GLY A 373 SHEET 4 A 5 TRP A 285 ILE A 295 -1 N GLY A 289 O ILE A 342 SHEET 5 A 5 LYS A 264 LEU A 265 1 N LYS A 264 O VAL A 286 SHEET 1 B 8 ILE A 246 ARG A 247 0 SHEET 2 B 8 VAL A 369 ALA A 375 -1 O ASP A 374 N ARG A 247 SHEET 3 B 8 THR A 340 LEU A 345 -1 N VAL A 341 O GLY A 373 SHEET 4 B 8 TRP A 285 ILE A 295 -1 N GLY A 289 O ILE A 342 SHEET 5 B 8 SER A 307 ASN A 312 -1 O ILE A 308 N ILE A 295 SHEET 6 B 8 ILE A 321 LEU A 325 -1 O ILE A 321 N LEU A 311 SHEET 7 B 8 CYS A 360 SER A 362 1 O LEU A 361 N PHE A 324 SHEET 8 B 8 ASN A 348 PRO A 349 -1 N ASN A 348 O SER A 362 SHEET 1 C 2 LEU A 378 THR A 380 0 SHEET 2 C 2 MET A 394 ASN A 396 -1 O VAL A 395 N GLY A 379 LINK SG CYS A 381 ZN ZN A 500 1555 1555 2.43 LINK SG CYS A 391 ZN ZN A 500 1555 1555 2.40 LINK SG CYS A 403 ZN ZN A 500 1555 1555 2.43 LINK ND1 HIS A 406 ZN ZN A 500 1555 1555 2.45 CISPEP 1 GLY A 303 LYS A 304 0 -7.20 SITE 1 AC1 4 CYS A 381 CYS A 391 CYS A 403 HIS A 406 CRYST1 95.017 95.017 61.159 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010524 0.006076 0.000000 0.00000 SCALE2 0.000000 0.012153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016351 0.00000