HEADER FLUORESCENT PROTEIN 13-APR-09 3H1R TITLE ORDER-DISORDER STRUCTURE OF FLUORESCENT PROTEIN FP480 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENT PROTEIN FP480; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTACMAEA QUADRICOLOR; SOURCE 3 ORGANISM_TAXID: 6118; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OD-STRUCTURE, ORDER-DISORDER STRUCTURE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.PLETNEV,K.S.MOROZOVA,V.V.VERKHUSHA,Z.DAUTER REVDAT 2 01-NOV-17 3H1R 1 REMARK REVDAT 1 08-SEP-09 3H1R 0 JRNL AUTH S.PLETNEV,K.S.MOROZOVA,V.V.VERKHUSHA,Z.DAUTER JRNL TITL ROTATIONAL ORDER-DISORDER STRUCTURE OF FLUORESCENT PROTEIN JRNL TITL 2 FP480 JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 906 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19690368 JRNL DOI 10.1107/S0907444909020927 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 4602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 283 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1797 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : -1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.526 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.333 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.668 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1844 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2496 ; 2.105 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 221 ; 8.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;35.129 ;24.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;20.277 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;24.649 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1414 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1108 ; 2.220 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1789 ; 3.756 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 736 ; 5.879 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 707 ; 7.740 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES REFINED INDIVIDUALLY. THE REMARK 3 COORDINATES REPRESENT THE CRYSTAL STRUCTURE OF FLUORESCENT REMARK 3 PROTEIN FP480 SUFFERING FROM ROTATIONAL ORDER-DISORDER REMARK 3 PATHOLOGY. THE LATTICE IS COMPOSED OF THE TETRAMERS WITH 222 REMARK 3 SYMMETRY INCORPORATED INTO AN ARRAY IN TWO DIFFERENT REMARK 3 ORIENTATIONS, ROTATED 90 DEGREES WITH RESPECT TO EACH OTHER REMARK 3 AROUND THE CRYSTAL C-AXIS, WITH TETRAMER AXES COINCIDENT WITH REMARK 3 CRYSTALLOGRAPHIC TWOFOLD AXES. THE DISTRIBUTION OF ALTERNATIVELY REMARK 3 ORIENTED TETRAMERS IN THE CRYSTAL IS NEARLY RANDOM. THIS CREATES REMARK 3 THE STRUCTURE WITH STATISTICALLY AVERAGED I422 SYMMETRY. REMARK 4 REMARK 4 3H1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS, 25% PEG 3350, 200MM REMARK 280 MGCL2, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.69700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.69700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.76250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.69700 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.69700 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 26.76250 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.69700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.69700 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 26.76250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.69700 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.69700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 26.76250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.69700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.69700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 26.76250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.69700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.69700 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 26.76250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.69700 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.69700 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 26.76250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.69700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.69700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 26.76250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 229 REMARK 465 HIS A 230 REMARK 465 LYS A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 LEU A 160 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU A 170 CB - CG - CD2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 PRO A 190 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 PRO A 190 C - N - CD ANGL. DEV. = -20.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 -30.35 -30.28 REMARK 500 PHE A 69 44.31 -108.83 REMARK 500 ASP A 78 74.01 -104.70 REMARK 500 PHE A 79 -29.84 -28.02 REMARK 500 ASP A 112 32.21 84.97 REMARK 500 LYS A 136 33.14 -97.25 REMARK 500 TYR A 148 125.38 -173.14 REMARK 500 ALA A 150 98.36 -167.68 REMARK 500 ASP A 151 42.08 80.63 REMARK 500 ALA A 184 -71.54 -27.18 REMARK 500 LYS A 185 -41.81 -13.39 REMARK 500 PRO A 225 -163.33 -53.92 REMARK 500 SER A 226 105.71 -167.24 REMARK 500 LYS A 227 4.58 -67.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 191 VAL A 192 149.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H1O RELATED DB: PDB DBREF 3H1R A 1 233 PDB 3H1R 3H1R 1 233 SEQRES 1 A 231 MET SER GLU LEU ILE THR GLU ASN MET HIS MET LYS LEU SEQRES 2 A 231 TYR MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS SEQRES 3 A 231 THR SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN SEQRES 4 A 231 THR GLN ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO SEQRES 5 A 231 PHE ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER HIS SEQRES 6 A 231 THR PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP SEQRES 7 A 231 LYS GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL SEQRES 8 A 231 THR THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN SEQRES 9 A 231 ASP THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL SEQRES 10 A 231 LYS ILE ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL SEQRES 11 A 231 MET GLN LYS LYS THR LEU GLY TRP GLU ALA HIS THR GLU SEQRES 12 A 231 MET LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG ALA SEQRES 13 A 231 ASP LEU ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE SEQRES 14 A 231 CYS ASN PHE LYS THR THR TYR ARG SER LYS LYS PRO ALA SEQRES 15 A 231 LYS ASN LEU LYS MET PRO GLY VAL TYR TYR VAL ASP TYR SEQRES 16 A 231 ARG LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR SEQRES 17 A 231 VAL GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP SEQRES 18 A 231 LEU PRO SER LYS LEU GLY HIS LYS LEU ASN MODRES 3H1R NRQ A 63 MET MODRES 3H1R NRQ A 63 TYR MODRES 3H1R NRQ A 63 GLY HET NRQ A 63 23 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) FORMUL 1 NRQ C16 H17 N3 O4 S HELIX 1 1 ALA A 54 PHE A 62 5 9 HELIX 2 2 ASP A 78 SER A 83 1 6 HELIX 3 3 GLY A 130 LYS A 135 1 6 HELIX 4 4 PRO A 183 LEU A 187 5 5 SHEET 1 A11 ASN A 71 HIS A 72 0 SHEET 2 A11 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 A11 THR A 38 GLU A 47 -1 N ILE A 43 O VAL A 211 SHEET 4 A11 HIS A 22 GLY A 32 -1 N GLU A 29 O ARG A 42 SHEET 5 A11 MET A 9 VAL A 19 -1 N LEU A 13 O SER A 28 SHEET 6 A11 CYS A 114 VAL A 124 1 O VAL A 119 N TYR A 14 SHEET 7 A11 VAL A 101 LEU A 110 -1 N SER A 109 O ILE A 116 SHEET 8 A11 PHE A 88 TYR A 96 -1 N TRP A 90 O GLN A 106 SHEET 9 A11 HIS A 169 SER A 180 -1 O ASN A 173 N THR A 95 SHEET 10 A11 GLY A 153 LEU A 164 -1 N LEU A 154 O TYR A 178 SHEET 11 A11 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 B 6 ASN A 71 HIS A 72 0 SHEET 2 B 6 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 B 6 TYR A 193 ALA A 205 -1 N ILE A 202 O GLU A 212 SHEET 4 B 6 HIS A 143 PRO A 149 -1 N HIS A 143 O TYR A 197 SHEET 5 B 6 GLY A 153 LEU A 164 -1 O ARG A 157 N MET A 146 SHEET 6 B 6 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 LINK C PHE A 62 N1 NRQ A 63 1555 1555 1.54 LINK C3 NRQ A 63 N SER A 66 1555 1555 1.34 CISPEP 1 GLY A 49 PRO A 50 0 -9.70 CISPEP 2 PHE A 84 PRO A 85 0 13.67 CRYST1 91.394 91.394 53.525 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010942 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018683 0.00000