HEADER REPLICATION 14-APR-09 3H20 TITLE CRYSTAL STRUCTURE OF PRIMASE REPB' COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMID RSF1010; SOURCE 3 ORGANISM_TAXID: 2504; SOURCE 4 GENE: REPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SCS1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMS4708 KEYWDS PRIMASE, NUCLEOTIDYLTRANSFERASE, HELIX-BUNDLE-DOMAIN, REPLICATION, KEYWDS 2 RSF1010 EXPDTA X-RAY DIFFRACTION AUTHOR S.GEIBEL,S.BANCHENKO,M.ENGEL,E.LANKA,W.SAENGER REVDAT 4 20-MAR-24 3H20 1 REMARK REVDAT 3 13-JUL-11 3H20 1 VERSN REVDAT 2 02-JUN-09 3H20 1 JRNL REVDAT 1 28-APR-09 3H20 0 JRNL AUTH S.GEIBEL,S.BANCHENKO,M.ENGEL,E.LANKA,W.SAENGER JRNL TITL STRUCTURE AND FUNCTION OF PRIMASE REPB' ENCODED BY JRNL TITL 2 BROAD-HOST-RANGE PLASMID RSF1010 THAT REPLICATES EXCLUSIVELY JRNL TITL 3 IN LEADING-STRAND MODE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 7810 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19416864 JRNL DOI 10.1073/PNAS.0902910106 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1457 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.409 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2210 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2982 ; 1.096 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 5.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;35.762 ;23.960 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;13.886 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.981 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1665 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 900 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1511 ; 0.282 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 183 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.099 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1481 ; 0.536 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2234 ; 0.838 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 840 ; 1.536 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 748 ; 2.516 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8109 38.5756 52.3602 REMARK 3 T TENSOR REMARK 3 T11: -0.2674 T22: -0.1872 REMARK 3 T33: -0.1897 T12: 0.0164 REMARK 3 T13: 0.0176 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.8930 L22: 4.7569 REMARK 3 L33: 2.6421 L12: 0.2555 REMARK 3 L13: -0.0318 L23: -2.3584 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.0295 S13: -0.1594 REMARK 3 S21: -0.0431 S22: -0.1479 S23: -0.3394 REMARK 3 S31: 0.1148 S32: 0.2914 S33: 0.1648 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0899 46.0587 21.1828 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: -0.1840 REMARK 3 T33: -0.1004 T12: 0.1226 REMARK 3 T13: 0.1056 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 8.8887 L22: 3.7430 REMARK 3 L33: 34.4259 L12: -3.8048 REMARK 3 L13: -16.0669 L23: 7.0733 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: 0.2216 S13: -0.2310 REMARK 3 S21: -0.9582 S22: -0.4026 S23: -0.2867 REMARK 3 S31: 0.1912 S32: 0.2198 S33: 0.3285 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): 53.9431 26.8101 1.4134 REMARK 3 T TENSOR REMARK 3 T11: -0.1587 T22: 0.0437 REMARK 3 T33: -0.0456 T12: -0.0308 REMARK 3 T13: 0.0318 T23: -0.1620 REMARK 3 L TENSOR REMARK 3 L11: 7.5641 L22: 2.1579 REMARK 3 L33: 13.1794 L12: -1.1367 REMARK 3 L13: 7.9648 L23: -1.2476 REMARK 3 S TENSOR REMARK 3 S11: 0.1876 S12: -0.1018 S13: -0.1933 REMARK 3 S21: -0.0993 S22: -0.3556 S23: 0.3474 REMARK 3 S31: 0.2550 S32: -1.2756 S33: 0.1680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-06; 26-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID14-2; ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931; 1.2557, 1.0442, 1.1406, REMARK 200 1.1402 REMARK 200 MONOCHROMATOR : SI111; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M AMMONIUM SULFATE, 22% (WT/VOL) REMARK 280 PEG MONOMETHYL ETHER 2000, 5% (VOL/VOL) GAMMA-BUTYROLACTONE, REMARK 280 100MM SODIUM ACETATE PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.74000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.87000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.61000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.87000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.87000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.87000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.61000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.87000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.87000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.87000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.48000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 154 REMARK 465 ARG A 159 REMARK 465 ALA A 160 REMARK 465 GLY A 161 REMARK 465 LEU A 208 REMARK 465 PRO A 209 REMARK 465 GLU A 210 REMARK 465 ARG A 211 REMARK 465 GLN A 212 REMARK 465 LEU A 213 REMARK 465 SER A 214 REMARK 465 ARG A 215 REMARK 465 HIS A 216 REMARK 465 PRO A 276 REMARK 465 GLY A 277 REMARK 465 ALA A 308 REMARK 465 PRO A 309 REMARK 465 ARG A 310 REMARK 465 GLN A 311 REMARK 465 ARG A 312 REMARK 465 GLY A 313 REMARK 465 MET A 314 REMARK 465 ASP A 315 REMARK 465 ARG A 316 REMARK 465 GLY A 317 REMARK 465 GLY A 318 REMARK 465 PRO A 319 REMARK 465 ASP A 320 REMARK 465 PHE A 321 REMARK 465 SER A 322 REMARK 465 MET A 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 HIS A 156 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 157 OG1 CG2 REMARK 470 THR A 158 OG1 CG2 REMARK 470 TYR A 162 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 274 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 HIS A 278 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 92 48.14 -102.95 REMARK 500 SER A 171 48.94 -159.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPO A 327 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H25 RELATED DB: PDB DBREF 3H20 A 1 323 UNP Q52349 Q52349_9ZZZZ 1 323 SEQRES 1 A 323 MET LYS ASN ASP ARG THR LEU GLN ALA ILE GLY ARG GLN SEQRES 2 A 323 LEU LYS ALA MET GLY CYS GLU ARG PHE ASP ILE GLY VAL SEQRES 3 A 323 ARG ASP ALA THR THR GLY GLN MET MET ASN ARG GLU TRP SEQRES 4 A 323 SER ALA ALA GLU VAL LEU GLN ASN THR PRO TRP LEU LYS SEQRES 5 A 323 ARG MET ASN ALA GLN GLY ASN ASP VAL TYR ILE ARG PRO SEQRES 6 A 323 ALA GLU GLN GLU ARG HIS GLY LEU VAL LEU VAL ASP ASP SEQRES 7 A 323 LEU SER GLU PHE ASP LEU ASP ASP MET LYS ALA GLU GLY SEQRES 8 A 323 ARG GLU PRO ALA LEU VAL VAL GLU THR SER PRO LYS ASN SEQRES 9 A 323 TYR GLN ALA TRP VAL LYS VAL ALA ASP ALA ALA GLY GLY SEQRES 10 A 323 GLU LEU ARG GLY GLN ILE ALA ARG THR LEU ALA SER GLU SEQRES 11 A 323 TYR ASP ALA ASP PRO ALA SER ALA ASP SER ARG HIS TYR SEQRES 12 A 323 GLY ARG LEU ALA GLY PHE THR ASN ARG LYS ASP LYS HIS SEQRES 13 A 323 THR THR ARG ALA GLY TYR GLN PRO TRP VAL LEU LEU ARG SEQRES 14 A 323 GLU SER LYS GLY LYS THR ALA THR ALA GLY PRO ALA LEU SEQRES 15 A 323 VAL GLN GLN ALA GLY GLN GLN ILE GLU GLN ALA GLN ARG SEQRES 16 A 323 GLN GLN GLU LYS ALA ARG ARG LEU ALA SER LEU GLU LEU SEQRES 17 A 323 PRO GLU ARG GLN LEU SER ARG HIS ARG ARG THR ALA LEU SEQRES 18 A 323 ASP GLU TYR ARG SER GLU MET ALA GLY LEU VAL LYS ARG SEQRES 19 A 323 PHE GLY ASP ASP LEU SER LYS CYS ASP PHE ILE ALA ALA SEQRES 20 A 323 GLN LYS LEU ALA SER ARG GLY ARG SER ALA GLU GLU ILE SEQRES 21 A 323 GLY LYS ALA MET ALA GLU ALA SER PRO ALA LEU ALA GLU SEQRES 22 A 323 ARG LYS PRO GLY HIS GLU ALA ASP TYR ILE GLU ARG THR SEQRES 23 A 323 VAL SER LYS VAL MET GLY LEU PRO SER VAL GLN LEU ALA SEQRES 24 A 323 ARG ALA GLU LEU ALA ARG ALA PRO ALA PRO ARG GLN ARG SEQRES 25 A 323 GLY MET ASP ARG GLY GLY PRO ASP PHE SER MET HET SO4 A 324 5 HET SO4 A 325 5 HET SO4 A 326 5 HET DPO A 327 9 HETNAM SO4 SULFATE ION HETNAM DPO DIPHOSPHATE FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 DPO O7 P2 4- FORMUL 6 HOH *253(H2 O) HELIX 1 1 ARG A 5 GLY A 18 1 14 HELIX 2 2 ALA A 41 ASN A 47 1 7 HELIX 3 3 ASN A 47 GLN A 57 1 11 HELIX 4 4 SER A 80 GLU A 90 1 11 HELIX 5 5 GLY A 116 TYR A 131 1 16 HELIX 6 6 ASP A 134 ALA A 138 5 5 HELIX 7 7 ALA A 178 GLU A 207 1 30 HELIX 8 8 THR A 219 PHE A 235 1 17 HELIX 9 9 ASP A 238 ARG A 253 1 16 HELIX 10 10 SER A 256 SER A 268 1 13 HELIX 11 11 SER A 268 GLU A 273 1 6 HELIX 12 12 HIS A 278 GLY A 292 1 15 HELIX 13 13 LEU A 293 ARG A 305 1 13 SHEET 1 A 4 MET A 34 SER A 40 0 SHEET 2 A 4 ARG A 21 ASP A 28 -1 N ILE A 24 O ARG A 37 SHEET 3 A 4 ASN A 59 PRO A 65 -1 O TYR A 62 N GLY A 25 SHEET 4 A 4 GLY A 144 ARG A 145 -1 O GLY A 144 N ILE A 63 SHEET 1 B 4 LEU A 73 LEU A 79 0 SHEET 2 B 4 ASN A 104 LYS A 110 -1 O ALA A 107 N VAL A 76 SHEET 3 B 4 LEU A 96 SER A 101 -1 N VAL A 98 O GLN A 106 SHEET 4 B 4 LEU A 167 GLU A 170 -1 O LEU A 167 N GLU A 99 SITE 1 AC1 4 LYS A 110 LYS A 174 THR A 175 HOH A 436 SITE 1 AC2 5 ARG A 37 TRP A 39 ARG A 285 LYS A 289 SITE 2 AC2 5 HOH A 421 SITE 1 AC3 5 ARG A 27 GLY A 121 ARG A 125 ASP A 139 SITE 2 AC3 5 SER A 140 SITE 1 AC4 6 TYR A 62 ARG A 145 ASN A 151 LYS A 153 SITE 2 AC4 6 HOH A 535 HOH A 565 CRYST1 91.740 91.740 83.480 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010900 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011979 0.00000