HEADER REPLICATION/DNA 14-APR-09 3H25 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PRIMASE REPB' IN COMPLEX TITLE 2 WITH INITIATOR DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-212; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SINGLE STRANDED INITIATOR DNA (SSIA); COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: SINGLE STRANDED INITIATOR DNA, GB 2701-2727; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMID RSF1010; SOURCE 3 ORGANISM_TAXID: 2504; SOURCE 4 GENE: REPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC DNA KEYWDS PROTEIN-DNA-COMPLEX, HAIRPIN DNA, MIXED ALPHA-BETA FOLD, PRIMASE, KEYWDS 2 RSF1010, REPLICATION, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.GEIBEL,S.BANCHENKO,M.ENGEL,E.LANKA,W.SAENGER REVDAT 4 01-NOV-23 3H25 1 SEQADV REVDAT 3 13-JUL-11 3H25 1 VERSN REVDAT 2 02-JUN-09 3H25 1 JRNL REVDAT 1 28-APR-09 3H25 0 JRNL AUTH S.GEIBEL,S.BANCHENKO,M.ENGEL,E.LANKA,W.SAENGER JRNL TITL STRUCTURE AND FUNCTION OF PRIMASE REPB' ENCODED BY JRNL TITL 2 BROAD-HOST-RANGE PLASMID RSF1010 THAT REPLICATES EXCLUSIVELY JRNL TITL 3 IN LEADING-STRAND MODE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 7810 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19416864 JRNL DOI 10.1073/PNAS.0902910106 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 6997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 368 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 497 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1417 REMARK 3 NUCLEIC ACID ATOMS : 546 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.401 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.309 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2049 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2887 ; 0.947 ; 2.290 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 4.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;36.977 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 236 ;15.163 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.051 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1395 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 768 ; 0.158 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1334 ; 0.280 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 71 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.068 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 954 ; 0.198 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1466 ; 0.353 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1438 ; 0.333 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1421 ; 0.658 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4478 16.5103 -10.3449 REMARK 3 T TENSOR REMARK 3 T11: -0.0096 T22: -0.0394 REMARK 3 T33: 0.0008 T12: 0.0120 REMARK 3 T13: 0.0041 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.8203 L22: 0.5064 REMARK 3 L33: 1.4252 L12: -0.4026 REMARK 3 L13: -0.9693 L23: 0.2647 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.0488 S13: -0.0944 REMARK 3 S21: -0.0278 S22: -0.0313 S23: -0.0443 REMARK 3 S31: 0.0784 S32: 0.0602 S33: 0.0524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR: SI REMARK 200 -111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CATALYTIC DOMAIN OF PDB 3H20, MODEL OF IDEAL B-DNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.44500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.67500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.66750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.67500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.22250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.67500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.66750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.67500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.22250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.44500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 HIS A 156 REMARK 465 THR A 157 REMARK 465 THR A 158 REMARK 465 ARG A 159 REMARK 465 ALA A 160 REMARK 465 GLY A 161 REMARK 465 TYR A 162 REMARK 465 LYS A 199 REMARK 465 ALA A 200 REMARK 465 ARG A 201 REMARK 465 ARG A 202 REMARK 465 LEU A 203 REMARK 465 ALA A 204 REMARK 465 SER A 205 REMARK 465 LEU A 206 REMARK 465 GLU A 207 REMARK 465 LEU A 208 REMARK 465 PRO A 209 REMARK 465 GLU A 210 REMARK 465 ARG A 211 REMARK 465 GLN A 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 70 NH1 NH2 REMARK 470 PHE A 82 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 141 CD NE CZ NH1 NH2 REMARK 470 LYS A 153 CD CE NZ REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLN A 163 CB CG CD OE1 NE2 REMARK 470 ARG A 169 NE CZ NH1 NH2 REMARK 470 LYS A 172 NZ REMARK 470 LYS A 174 CD CE NZ REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 GLN A 194 CG CD OE1 NE2 REMARK 470 ARG A 195 CD NE CZ NH1 NH2 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 DC C 1 O5' C5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT C 5 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 14 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 16 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA C 17 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 18 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DG C 20 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 22 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C 26 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 65.68 71.15 REMARK 500 ARG A 92 44.93 -104.93 REMARK 500 PRO A 102 121.24 -37.46 REMARK 500 SER A 171 59.23 -155.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H20 RELATED DB: PDB DBREF 3H25 A 1 212 UNP Q52349 Q52349_9ZZZZ 1 212 DBREF 3H25 C 1 27 GB 152577 M28829 2701 2727 SEQADV 3H25 MET A -13 UNP Q52349 EXPRESSION TAG SEQADV 3H25 GLY A -12 UNP Q52349 EXPRESSION TAG SEQADV 3H25 SER A -11 UNP Q52349 EXPRESSION TAG SEQADV 3H25 SER A -10 UNP Q52349 EXPRESSION TAG SEQADV 3H25 HIS A -9 UNP Q52349 EXPRESSION TAG SEQADV 3H25 SER A -8 UNP Q52349 EXPRESSION TAG SEQADV 3H25 SER A -7 UNP Q52349 EXPRESSION TAG SEQADV 3H25 GLY A -6 UNP Q52349 EXPRESSION TAG SEQADV 3H25 LEU A -5 UNP Q52349 EXPRESSION TAG SEQADV 3H25 VAL A -4 UNP Q52349 EXPRESSION TAG SEQADV 3H25 PRO A -3 UNP Q52349 EXPRESSION TAG SEQADV 3H25 ARG A -2 UNP Q52349 EXPRESSION TAG SEQADV 3H25 GLY A -1 UNP Q52349 EXPRESSION TAG SEQADV 3H25 SER A 0 UNP Q52349 EXPRESSION TAG SEQRES 1 A 226 MET GLY SER SER HIS SER SER GLY LEU VAL PRO ARG GLY SEQRES 2 A 226 SER MET LYS ASN ASP ARG THR LEU GLN ALA ILE GLY ARG SEQRES 3 A 226 GLN LEU LYS ALA MET GLY CYS GLU ARG PHE ASP ILE GLY SEQRES 4 A 226 VAL ARG ASP ALA THR THR GLY GLN MET MET ASN ARG GLU SEQRES 5 A 226 TRP SER ALA ALA GLU VAL LEU GLN ASN THR PRO TRP LEU SEQRES 6 A 226 LYS ARG MET ASN ALA GLN GLY ASN ASP VAL TYR ILE ARG SEQRES 7 A 226 PRO ALA GLU GLN GLU ARG HIS GLY LEU VAL LEU VAL ASP SEQRES 8 A 226 ASP LEU SER GLU PHE ASP LEU ASP ASP MET LYS ALA GLU SEQRES 9 A 226 GLY ARG GLU PRO ALA LEU VAL VAL GLU THR SER PRO LYS SEQRES 10 A 226 ASN TYR GLN ALA TRP VAL LYS VAL ALA ASP ALA ALA GLY SEQRES 11 A 226 GLY GLU LEU ARG GLY GLN ILE ALA ARG THR LEU ALA SER SEQRES 12 A 226 GLU TYR ASP ALA ASP PRO ALA SER ALA ASP SER ARG HIS SEQRES 13 A 226 TYR GLY ARG LEU ALA GLY PHE THR ASN ARG LYS ASP LYS SEQRES 14 A 226 HIS THR THR ARG ALA GLY TYR GLN PRO TRP VAL LEU LEU SEQRES 15 A 226 ARG GLU SER LYS GLY LYS THR ALA THR ALA GLY PRO ALA SEQRES 16 A 226 LEU VAL GLN GLN ALA GLY GLN GLN ILE GLU GLN ALA GLN SEQRES 17 A 226 ARG GLN GLN GLU LYS ALA ARG ARG LEU ALA SER LEU GLU SEQRES 18 A 226 LEU PRO GLU ARG GLN SEQRES 1 C 27 DC DC DT DT DT DC DC DC DC DC DT DA DC SEQRES 2 C 27 DC DC DG DA DA DG DG DG DT DG DG DG DG SEQRES 3 C 27 DG FORMUL 3 HOH *24(H2 O) HELIX 1 1 ASP A 4 GLY A 18 1 15 HELIX 2 2 ALA A 41 ASN A 47 1 7 HELIX 3 3 ASN A 47 GLN A 57 1 11 HELIX 4 4 SER A 80 GLU A 90 1 11 HELIX 5 5 GLY A 116 TYR A 131 1 16 HELIX 6 6 ASP A 134 ALA A 138 5 5 HELIX 7 7 ALA A 178 GLN A 196 1 19 SHEET 1 A 4 MET A 34 SER A 40 0 SHEET 2 A 4 ARG A 21 ASP A 28 -1 N PHE A 22 O TRP A 39 SHEET 3 A 4 ASN A 59 PRO A 65 -1 O TYR A 62 N GLY A 25 SHEET 4 A 4 GLY A 144 ARG A 145 -1 O GLY A 144 N ILE A 63 SHEET 1 B 4 LEU A 73 LEU A 79 0 SHEET 2 B 4 ASN A 104 LYS A 110 -1 O VAL A 109 N VAL A 74 SHEET 3 B 4 LEU A 96 SER A 101 -1 N SER A 101 O ASN A 104 SHEET 4 B 4 LEU A 167 GLU A 170 -1 O LEU A 167 N GLU A 99 CISPEP 1 ASP A 154 LYS A 155 0 2.93 CRYST1 85.350 85.350 68.890 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014516 0.00000