HEADER OXIDOREDUCTASE 14-APR-09 3H2S TITLE CRYSTAL STRUCTURE OF THE Q03B84 PROTEIN FROM LACTOBACILLUS CASEI. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LCR19. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NADH-FLAVIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI ATCC 334; SOURCE 3 ORGANISM_TAXID: 321967; SOURCE 4 ATCC: 334; SOURCE 5 GENE: LSEI_0698; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21-23C KEYWDS Q03B84, NADH-FLAVIN REDUCTASE, NESG, LCR19, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.VOROBIEV,S.LEW,J.SEETHARAMAN,D.WANG,C.CICCOSANTI,S.SAHDEV, AUTHOR 2 T.B.ACTON,R.XIAO,J.EVERETT,R.NAIR,B.ROST,G.T.MONTELIONE,L.TONG, AUTHOR 3 J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 27-NOV-24 3H2S 1 REMARK SEQADV LINK REVDAT 2 25-OCT-17 3H2S 1 REMARK REVDAT 1 28-APR-09 3H2S 0 JRNL AUTH S.VOROBIEV,S.LEW,J.SEETHARAMAN,D.WANG,C.CICCOSANTI,S.SAHDEV, JRNL AUTH 2 T.B.ACTON,R.XIAO,J.EVERETT,R.NAIR,B.ROST,G.T.MONTELIONE, JRNL AUTH 3 L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE Q03B84 PROTEIN FROM LACTOBACILLUS JRNL TITL 2 CASEI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 42277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.365 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3407 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4671 ; 1.187 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;35.769 ;23.676 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;14.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.559 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2560 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1627 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2313 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 318 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2194 ; 3.285 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3430 ; 4.243 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1359 ; 7.091 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1241 ; 9.229 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6790 50.3040 42.6760 REMARK 3 T TENSOR REMARK 3 T11: -0.0088 T22: -0.0044 REMARK 3 T33: -0.0031 T12: -0.0019 REMARK 3 T13: -0.0021 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.1151 L22: 0.1605 REMARK 3 L33: 0.1262 L12: -0.0276 REMARK 3 L13: -0.0489 L23: -0.0575 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.0045 S13: 0.0121 REMARK 3 S21: 0.0050 S22: 0.0013 S23: 0.0069 REMARK 3 S31: -0.0096 S32: -0.0111 S33: 0.0068 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0260 50.1730 11.8720 REMARK 3 T TENSOR REMARK 3 T11: -0.0114 T22: -0.0061 REMARK 3 T33: -0.0042 T12: -0.0029 REMARK 3 T13: -0.0026 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.1910 L22: 0.1856 REMARK 3 L33: 0.1973 L12: -0.0369 REMARK 3 L13: -0.0114 L23: 0.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.0141 S13: 0.0029 REMARK 3 S21: -0.0056 S22: 0.0004 S23: -0.0123 REMARK 3 S31: -0.0163 S32: 0.0132 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9500 46.0980 45.4760 REMARK 3 T TENSOR REMARK 3 T11: -0.0102 T22: -0.0092 REMARK 3 T33: -0.0378 T12: -0.0176 REMARK 3 T13: -0.0023 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.6015 L22: 4.9455 REMARK 3 L33: 0.3924 L12: -4.0075 REMARK 3 L13: 1.0346 L23: -0.4188 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: 0.0367 S13: -0.0428 REMARK 3 S21: -0.1630 S22: -0.1302 S23: 0.0404 REMARK 3 S31: -0.0587 S32: 0.0478 S33: 0.0423 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 302 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7010 46.0510 9.2310 REMARK 3 T TENSOR REMARK 3 T11: -0.0071 T22: -0.0016 REMARK 3 T33: -0.0129 T12: -0.0002 REMARK 3 T13: 0.0127 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.7204 L22: 4.8798 REMARK 3 L33: 0.7919 L12: 3.3783 REMARK 3 L13: 1.4155 L23: 1.5633 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: 0.0039 S13: -0.0522 REMARK 3 S21: 0.1683 S22: -0.0017 S23: 0.0943 REMARK 3 S31: 0.0037 S32: 0.0374 S33: -0.0419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING REMARK 4 REMARK 4 3H2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80385 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M POTASSIUM NITRATE, REMARK 280 1MM NADPH, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.83200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.27450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.88400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.27450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.83200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.88400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER ACCORDING TO AGGREGATION SCREENING: 46.96 KDA, 96.9% REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 217 REMARK 465 GLU A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 LEU B 217 REMARK 465 GLU B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 ASP A 39 CG OD1 OD2 REMARK 470 THR A 44 OG1 CG2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 THR B 44 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 104 -165.46 -106.97 REMARK 500 THR A 168 -80.11 -129.57 REMARK 500 LYS A 174 -83.18 -111.28 REMARK 500 LEU B 104 -162.89 -104.34 REMARK 500 SER B 159 -179.17 -58.49 REMARK 500 THR B 168 -79.20 -123.69 REMARK 500 LYS B 174 -82.15 -107.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LCR19 RELATED DB: TARGETDB DBREF 3H2S A 1 216 UNP Q03B84 Q03B84_LACC3 1 216 DBREF 3H2S B 1 216 UNP Q03B84 Q03B84_LACC3 1 216 SEQADV 3H2S LEU A 217 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S GLU A 218 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS A 219 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS A 220 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS A 221 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS A 222 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS A 223 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS A 224 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S LEU B 217 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S GLU B 218 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS B 219 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS B 220 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS B 221 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS B 222 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS B 223 UNP Q03B84 EXPRESSION TAG SEQADV 3H2S HIS B 224 UNP Q03B84 EXPRESSION TAG SEQRES 1 A 224 MSE LYS ILE ALA VAL LEU GLY ALA THR GLY ARG ALA GLY SEQRES 2 A 224 SER ALA ILE VAL ALA GLU ALA ARG ARG ARG GLY HIS GLU SEQRES 3 A 224 VAL LEU ALA VAL VAL ARG ASP PRO GLN LYS ALA ALA ASP SEQRES 4 A 224 ARG LEU GLY ALA THR VAL ALA THR LEU VAL LYS GLU PRO SEQRES 5 A 224 LEU VAL LEU THR GLU ALA ASP LEU ASP SER VAL ASP ALA SEQRES 6 A 224 VAL VAL ASP ALA LEU SER VAL PRO TRP GLY SER GLY ARG SEQRES 7 A 224 GLY TYR LEU HIS LEU ASP PHE ALA THR HIS LEU VAL SER SEQRES 8 A 224 LEU LEU ARG ASN SER ASP THR LEU ALA VAL PHE ILE LEU SEQRES 9 A 224 GLY SER ALA SER LEU ALA MSE PRO GLY ALA ASP HIS PRO SEQRES 10 A 224 MSE ILE LEU ASP PHE PRO GLU SER ALA ALA SER GLN PRO SEQRES 11 A 224 TRP TYR ASP GLY ALA LEU TYR GLN TYR TYR GLU TYR GLN SEQRES 12 A 224 PHE LEU GLN MSE ASN ALA ASN VAL ASN TRP ILE GLY ILE SEQRES 13 A 224 SER PRO SER GLU ALA PHE PRO SER GLY PRO ALA THR SER SEQRES 14 A 224 TYR VAL ALA GLY LYS ASP THR LEU LEU VAL GLY GLU ASP SEQRES 15 A 224 GLY GLN SER HIS ILE THR THR GLY ASN MSE ALA LEU ALA SEQRES 16 A 224 ILE LEU ASP GLN LEU GLU HIS PRO THR ALA ILE ARG ASP SEQRES 17 A 224 ARG ILE VAL VAL ARG ASP ALA ASP LEU GLU HIS HIS HIS SEQRES 18 A 224 HIS HIS HIS SEQRES 1 B 224 MSE LYS ILE ALA VAL LEU GLY ALA THR GLY ARG ALA GLY SEQRES 2 B 224 SER ALA ILE VAL ALA GLU ALA ARG ARG ARG GLY HIS GLU SEQRES 3 B 224 VAL LEU ALA VAL VAL ARG ASP PRO GLN LYS ALA ALA ASP SEQRES 4 B 224 ARG LEU GLY ALA THR VAL ALA THR LEU VAL LYS GLU PRO SEQRES 5 B 224 LEU VAL LEU THR GLU ALA ASP LEU ASP SER VAL ASP ALA SEQRES 6 B 224 VAL VAL ASP ALA LEU SER VAL PRO TRP GLY SER GLY ARG SEQRES 7 B 224 GLY TYR LEU HIS LEU ASP PHE ALA THR HIS LEU VAL SER SEQRES 8 B 224 LEU LEU ARG ASN SER ASP THR LEU ALA VAL PHE ILE LEU SEQRES 9 B 224 GLY SER ALA SER LEU ALA MSE PRO GLY ALA ASP HIS PRO SEQRES 10 B 224 MSE ILE LEU ASP PHE PRO GLU SER ALA ALA SER GLN PRO SEQRES 11 B 224 TRP TYR ASP GLY ALA LEU TYR GLN TYR TYR GLU TYR GLN SEQRES 12 B 224 PHE LEU GLN MSE ASN ALA ASN VAL ASN TRP ILE GLY ILE SEQRES 13 B 224 SER PRO SER GLU ALA PHE PRO SER GLY PRO ALA THR SER SEQRES 14 B 224 TYR VAL ALA GLY LYS ASP THR LEU LEU VAL GLY GLU ASP SEQRES 15 B 224 GLY GLN SER HIS ILE THR THR GLY ASN MSE ALA LEU ALA SEQRES 16 B 224 ILE LEU ASP GLN LEU GLU HIS PRO THR ALA ILE ARG ASP SEQRES 17 B 224 ARG ILE VAL VAL ARG ASP ALA ASP LEU GLU HIS HIS HIS SEQRES 18 B 224 HIS HIS HIS MODRES 3H2S MSE A 1 MET SELENOMETHIONINE MODRES 3H2S MSE A 111 MET SELENOMETHIONINE MODRES 3H2S MSE A 118 MET SELENOMETHIONINE MODRES 3H2S MSE A 147 MET SELENOMETHIONINE MODRES 3H2S MSE A 192 MET SELENOMETHIONINE MODRES 3H2S MSE B 1 MET SELENOMETHIONINE MODRES 3H2S MSE B 111 MET SELENOMETHIONINE MODRES 3H2S MSE B 118 MET SELENOMETHIONINE MODRES 3H2S MSE B 147 MET SELENOMETHIONINE MODRES 3H2S MSE B 192 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 111 8 HET MSE A 118 8 HET MSE A 147 8 HET MSE A 192 8 HET MSE B 1 8 HET MSE B 111 8 HET MSE B 118 8 HET MSE B 147 8 HET MSE B 192 8 HET NDP A 301 48 HET NDP B 301 48 HETNAM MSE SELENOMETHIONINE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 HOH *360(H2 O) HELIX 1 1 GLY A 10 ARG A 23 1 14 HELIX 2 2 ASP A 33 LEU A 41 1 9 HELIX 3 3 GLU A 51 LEU A 55 5 5 HELIX 4 4 THR A 56 ASP A 61 1 6 HELIX 5 5 GLY A 79 LEU A 92 1 14 HELIX 6 6 GLY A 105 LEU A 109 5 5 HELIX 7 7 PRO A 117 PHE A 122 5 6 HELIX 8 8 PRO A 123 GLN A 129 5 7 HELIX 9 9 TRP A 131 GLN A 146 1 16 HELIX 10 10 THR A 188 HIS A 202 1 15 HELIX 11 11 GLY B 10 ARG B 23 1 14 HELIX 12 12 ASP B 33 LEU B 41 1 9 HELIX 13 13 GLU B 51 LEU B 55 5 5 HELIX 14 14 GLU B 57 ASP B 61 5 5 HELIX 15 15 GLY B 79 LEU B 93 1 15 HELIX 16 16 GLY B 105 LEU B 109 5 5 HELIX 17 17 PRO B 117 PHE B 122 5 6 HELIX 18 18 PRO B 123 GLN B 129 5 7 HELIX 19 19 TRP B 131 MSE B 147 1 17 HELIX 20 20 THR B 188 HIS B 202 1 15 SHEET 1 A 8 ALA A 46 VAL A 49 0 SHEET 2 A 8 GLU A 26 VAL A 31 1 N ALA A 29 O LEU A 48 SHEET 3 A 8 LYS A 2 LEU A 6 1 N ILE A 3 O GLU A 26 SHEET 4 A 8 ALA A 65 ASP A 68 1 O VAL A 67 N LEU A 6 SHEET 5 A 8 LEU A 99 ILE A 103 1 O VAL A 101 N ASP A 68 SHEET 6 A 8 TRP A 153 PRO A 158 1 O ILE A 154 N PHE A 102 SHEET 7 A 8 ARG A 209 ASP A 214 1 O ILE A 210 N SER A 157 SHEET 8 A 8 TYR A 170 GLY A 173 -1 N GLY A 173 O VAL A 211 SHEET 1 B 8 ALA B 46 VAL B 49 0 SHEET 2 B 8 GLU B 26 VAL B 31 1 N ALA B 29 O LEU B 48 SHEET 3 B 8 LYS B 2 LEU B 6 1 N ILE B 3 O GLU B 26 SHEET 4 B 8 ALA B 65 ASP B 68 1 O VAL B 67 N LEU B 6 SHEET 5 B 8 LEU B 99 ILE B 103 1 O VAL B 101 N ASP B 68 SHEET 6 B 8 ASN B 152 PRO B 158 1 O ILE B 154 N PHE B 102 SHEET 7 B 8 ARG B 209 ASP B 214 1 O ILE B 210 N SER B 157 SHEET 8 B 8 TYR B 170 GLY B 173 -1 N GLY B 173 O VAL B 211 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ALA A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N PRO A 112 1555 1555 1.34 LINK C PRO A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N ILE A 119 1555 1555 1.33 LINK C GLN A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N ASN A 148 1555 1555 1.33 LINK C ASN A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ALA A 193 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C ALA B 110 N MSE B 111 1555 1555 1.33 LINK C MSE B 111 N PRO B 112 1555 1555 1.34 LINK C PRO B 117 N MSE B 118 1555 1555 1.33 LINK C MSE B 118 N ILE B 119 1555 1555 1.33 LINK C GLN B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N ASN B 148 1555 1555 1.33 LINK C ASN B 191 N MSE B 192 1555 1555 1.34 LINK C MSE B 192 N ALA B 193 1555 1555 1.33 SITE 1 AC1 32 GLY A 7 THR A 9 GLY A 10 ARG A 11 SITE 2 AC1 32 ALA A 12 ARG A 32 LYS A 36 PRO A 52 SITE 3 AC1 32 ALA A 69 LEU A 70 SER A 71 LEU A 81 SITE 4 AC1 32 HIS A 82 ILE A 103 GLY A 105 SER A 106 SITE 5 AC1 32 GLN A 138 PRO A 158 SER A 159 GLU A 160 SITE 6 AC1 32 PHE A 162 HOH A 405 HOH A 407 HOH A 441 SITE 7 AC1 32 HOH A 561 HOH A 625 HOH A 628 HOH A 659 SITE 8 AC1 32 HOH A 663 HOH A 733 ARG B 22 SER B 169 SITE 1 AC2 35 ARG A 22 SER A 169 GLY B 7 THR B 9 SITE 2 AC2 35 GLY B 10 ARG B 11 ALA B 12 ARG B 32 SITE 3 AC2 35 LYS B 36 PRO B 52 ALA B 69 LEU B 70 SITE 4 AC2 35 SER B 71 LEU B 81 HIS B 82 ILE B 103 SITE 5 AC2 35 GLY B 105 SER B 106 GLN B 138 PRO B 158 SITE 6 AC2 35 SER B 159 GLU B 160 PHE B 162 HOH B 406 SITE 7 AC2 35 HOH B 414 HOH B 447 HOH B 476 HOH B 548 SITE 8 AC2 35 HOH B 549 HOH B 575 HOH B 605 HOH B 656 SITE 9 AC2 35 HOH B 687 HOH B 699 HOH B 745 CRYST1 47.664 93.768 102.549 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009751 0.00000 HETATM 1 N MSE A 1 3.441 39.311 44.432 1.00 19.25 N ANISOU 1 N MSE A 1 1642 2976 2693 -161 -207 393 N HETATM 2 CA MSE A 1 4.119 39.313 43.108 1.00 18.81 C ANISOU 2 CA MSE A 1 1869 2702 2575 -259 -118 344 C HETATM 3 C MSE A 1 5.471 38.611 43.216 1.00 16.32 C ANISOU 3 C MSE A 1 1880 2036 2285 -11 -314 456 C HETATM 4 O MSE A 1 5.962 38.368 44.321 1.00 18.55 O ANISOU 4 O MSE A 1 1975 2612 2460 -49 -86 359 O HETATM 5 CB MSE A 1 4.296 40.756 42.598 1.00 16.00 C ANISOU 5 CB MSE A 1 1414 2143 2521 -145 -576 734 C HETATM 6 CG MSE A 1 5.602 41.436 43.032 1.00 17.33 C ANISOU 6 CG MSE A 1 2338 1589 2658 -522 98 147 C HETATM 7 SE MSE A 1 5.776 43.296 42.401 1.00 26.74 SE ANISOU 7 SE MSE A 1 3193 3736 3231 -212 -71 200 SE HETATM 8 CE MSE A 1 5.057 43.066 40.589 1.00 44.75 C ANISOU 8 CE MSE A 1 5239 6823 4940 -207 -564 -289 C