HEADER CELL ADHESION 14-APR-09 3H2V TITLE HUMAN RAVER1 RRM1 DOMAIN IN COMPLEX WITH HUMAN VINCULIN TAIL DOMAIN VT COMPND MOL_ID: 1; COMPND 2 MOLECULE: VINCULIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAVER-1; COMPND 8 CHAIN: E, F, G, H; COMPND 9 FRAGMENT: RRM 1 DOMAIN; COMPND 10 SYNONYM: RIBONUCLEOPROTEIN PTB-BINDING 1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: RAVER1, KIAA1978; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOCAL ADHESION, ACTIN CYTOSKELETON, RNP MOTIF, RNA BINDING, KEYWDS 2 ALTERNATIVE SPLICING, CYTOPLASM, NUCLEUS, PHOSPHOPROTEIN, RNA- KEYWDS 3 BINDING, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.H.LEE,E.S.RANGARAJAN,S.D.YOGESHA,T.IZARD REVDAT 2 06-SEP-23 3H2V 1 SEQADV REVDAT 1 28-JUL-09 3H2V 0 JRNL AUTH J.H.LEE,E.S.RANGARAJAN,S.D.YOGESHA,T.IZARD JRNL TITL RAVER1 INTERACTIONS WITH VINCULIN AND RNA SUGGEST A JRNL TITL 2 FEED-FORWARD PATHWAY IN DIRECTING MRNA TO FOCAL ADHESIONS JRNL REF STRUCTURE V. 17 833 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19523901 JRNL DOI 10.1016/J.STR.2009.04.010 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.3.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 23051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3308 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2639 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3141 REMARK 3 BIN R VALUE (WORKING SET) : 0.2595 REMARK 3 BIN FREE R VALUE : 0.3483 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.33061 REMARK 3 B22 (A**2) : 6.17486 REMARK 3 B33 (A**2) : -11.50547 REMARK 3 B12 (A**2) : -1.62686 REMARK 3 B13 (A**2) : 2.47506 REMARK 3 B23 (A**2) : -2.35676 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.403 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7762 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 10395 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 1738 ; 0.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 219 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 1097 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 7762 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 222 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1RKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS (PH 7.5), 200 MM SODIUM REMARK 280 NITRATE, AND 16% PEG-3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 879 REMARK 465 GLU A 880 REMARK 465 LYS A 881 REMARK 465 ASP A 882 REMARK 465 GLU A 883 REMARK 465 LYS A 889 REMARK 465 ALA A 890 REMARK 465 GLY A 891 REMARK 465 GLU A 892 REMARK 465 THR A 1062 REMARK 465 PRO A 1063 REMARK 465 TRP A 1064 REMARK 465 TYR A 1065 REMARK 465 GLN A 1066 REMARK 465 GLU B 879 REMARK 465 GLU B 880 REMARK 465 LYS B 881 REMARK 465 ASP B 882 REMARK 465 GLU B 883 REMARK 465 GLN B 888 REMARK 465 LYS B 889 REMARK 465 ALA B 890 REMARK 465 GLY B 891 REMARK 465 ILE B 1046 REMARK 465 LYS B 1047 REMARK 465 ILE B 1048 REMARK 465 ARG B 1049 REMARK 465 THR B 1050 REMARK 465 ASP B 1051 REMARK 465 ALA B 1052 REMARK 465 GLY B 1053 REMARK 465 PHE B 1054 REMARK 465 TRP B 1064 REMARK 465 TYR B 1065 REMARK 465 GLN B 1066 REMARK 465 GLU C 879 REMARK 465 GLU C 880 REMARK 465 LYS C 881 REMARK 465 ASP C 882 REMARK 465 GLU C 883 REMARK 465 GLN C 888 REMARK 465 LYS C 889 REMARK 465 ALA C 890 REMARK 465 GLY C 891 REMARK 465 GLU C 892 REMARK 465 LYS C 1047 REMARK 465 ILE C 1048 REMARK 465 ARG C 1049 REMARK 465 THR C 1050 REMARK 465 ASP C 1051 REMARK 465 ALA C 1052 REMARK 465 GLY C 1053 REMARK 465 PHE C 1054 REMARK 465 TRP C 1064 REMARK 465 TYR C 1065 REMARK 465 GLN C 1066 REMARK 465 GLU D 879 REMARK 465 GLU D 880 REMARK 465 LYS D 881 REMARK 465 ASP D 882 REMARK 465 GLU D 883 REMARK 465 GLN D 888 REMARK 465 LYS D 889 REMARK 465 ALA D 890 REMARK 465 GLY D 891 REMARK 465 GLU D 892 REMARK 465 TRP D 1064 REMARK 465 TYR D 1065 REMARK 465 GLN D 1066 REMARK 465 HIS F 57 REMARK 465 HIS H 57 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 887 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 885 CG PHE A 885 CD1 -0.129 REMARK 500 PHE A 885 CZ PHE A 885 CE2 -0.190 REMARK 500 PHE A 885 CE2 PHE A 885 CD2 -0.157 REMARK 500 PHE A 885 C PHE A 885 O -0.117 REMARK 500 PRO A 886 CG PRO A 886 CD -0.241 REMARK 500 VAL A1038 N VAL A1038 CA -0.122 REMARK 500 VAL A1038 CA VAL A1038 CB -0.266 REMARK 500 VAL A1038 CB VAL A1038 CG1 -0.346 REMARK 500 VAL A1038 CB VAL A1038 CG2 -0.177 REMARK 500 VAL A1038 CA VAL A1038 C -0.174 REMARK 500 VAL A1038 C VAL A1038 O -0.194 REMARK 500 ARG A1039 CB ARG A1039 CG -0.194 REMARK 500 ARG A1039 CZ ARG A1039 NH2 -0.084 REMARK 500 ARG A1039 CA ARG A1039 C -0.172 REMARK 500 ARG A1039 C ARG A1039 O -0.179 REMARK 500 GLU A1040 N GLU A1040 CA -0.126 REMARK 500 GLU A1040 CD GLU A1040 OE2 -0.088 REMARK 500 GLU A1040 C GLU A1040 O -0.190 REMARK 500 ARG E 119 CZ ARG E 119 NH1 -0.104 REMARK 500 ARG E 119 CZ ARG E 119 NH2 -0.092 REMARK 500 ARG E 119 C ARG E 119 O -0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 886 C - N - CD ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A1039 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 GLU A1040 OE1 - CD - OE2 ANGL. DEV. = -10.0 DEGREES REMARK 500 PRO B 989 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 PRO B1063 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO B1063 C - N - CD ANGL. DEV. = -12.6 DEGREES REMARK 500 PRO C 989 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO C1063 C - N - CD ANGL. DEV. = -20.8 DEGREES REMARK 500 PRO D 886 C - N - CD ANGL. DEV. = -32.8 DEGREES REMARK 500 ARG E 119 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 887 -149.62 -48.15 REMARK 500 ILE A 894 -140.71 -127.43 REMARK 500 PRO B 886 -167.86 -77.26 REMARK 500 VAL B 893 53.38 -104.69 REMARK 500 ILE B 894 -145.07 -122.62 REMARK 500 GLN B 896 -56.53 -25.84 REMARK 500 LYS B 915 100.48 -51.60 REMARK 500 VAL B 937 -8.55 -55.59 REMARK 500 PRO C 886 -174.63 -61.49 REMARK 500 ILE C 894 -144.67 -124.64 REMARK 500 LYS C 915 108.65 -57.81 REMARK 500 VAL C 937 -5.01 -57.30 REMARK 500 GLN C 983 -71.55 -51.21 REMARK 500 PHE D 885 150.34 157.76 REMARK 500 PRO D 886 -159.92 -103.62 REMARK 500 ASN D 895 100.58 -42.39 REMARK 500 ALA D1052 83.82 -170.61 REMARK 500 TRP D1058 78.19 -115.47 REMARK 500 ASP E 69 32.06 -99.70 REMARK 500 LEU E 79 42.47 -93.86 REMARK 500 GLN E 115 8.49 81.41 REMARK 500 GLU E 120 9.15 80.46 REMARK 500 ASP F 69 30.78 -97.73 REMARK 500 LEU F 79 47.53 -96.93 REMARK 500 GLN F 115 8.10 88.78 REMARK 500 GLU F 120 8.37 83.74 REMARK 500 LEU G 79 48.23 -95.06 REMARK 500 GLN G 115 8.87 89.17 REMARK 500 GLU G 120 7.78 83.73 REMARK 500 LEU H 79 52.07 -98.76 REMARK 500 ASN H 102 -166.82 -160.44 REMARK 500 GLU H 120 8.31 84.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RKE RELATED DB: PDB REMARK 900 RELATED ID: 1TR2 RELATED DB: PDB REMARK 900 RELATED ID: 3H2U RELATED DB: PDB DBREF 3H2V A 879 1066 UNP B4DTM7 B4DTM7_HUMAN 140 327 DBREF 3H2V B 879 1066 UNP B4DTM7 B4DTM7_HUMAN 140 327 DBREF 3H2V C 879 1066 UNP B4DTM7 B4DTM7_HUMAN 140 327 DBREF 3H2V D 879 1066 UNP B4DTM7 B4DTM7_HUMAN 140 327 DBREF 3H2V E 59 130 UNP Q8IY67 RAVR1_HUMAN 59 130 DBREF 3H2V F 59 130 UNP Q8IY67 RAVR1_HUMAN 59 130 DBREF 3H2V G 59 130 UNP Q8IY67 RAVR1_HUMAN 59 130 DBREF 3H2V H 59 130 UNP Q8IY67 RAVR1_HUMAN 59 130 SEQADV 3H2V HIS E 57 UNP Q8IY67 CLONING ARTIFACT SEQADV 3H2V MET E 58 UNP Q8IY67 CLONING ARTIFACT SEQADV 3H2V HIS F 57 UNP Q8IY67 CLONING ARTIFACT SEQADV 3H2V MET F 58 UNP Q8IY67 CLONING ARTIFACT SEQADV 3H2V HIS G 57 UNP Q8IY67 CLONING ARTIFACT SEQADV 3H2V MET G 58 UNP Q8IY67 CLONING ARTIFACT SEQADV 3H2V HIS H 57 UNP Q8IY67 CLONING ARTIFACT SEQADV 3H2V MET H 58 UNP Q8IY67 CLONING ARTIFACT SEQRES 1 A 188 GLU GLU LYS ASP GLU GLU PHE PRO GLU GLN LYS ALA GLY SEQRES 2 A 188 GLU VAL ILE ASN GLN PRO MET MET MET ALA ALA ARG GLN SEQRES 3 A 188 LEU HIS ASP GLU ALA ARG LYS TRP SER SER LYS GLY ASN SEQRES 4 A 188 ASP ILE ILE ALA ALA ALA LYS ARG MET ALA LEU LEU MET SEQRES 5 A 188 ALA GLU MET SER ARG LEU VAL ARG GLY GLY SER GLY THR SEQRES 6 A 188 LYS ARG ALA LEU ILE GLN CYS ALA LYS ASP ILE ALA LYS SEQRES 7 A 188 ALA SER ASP GLU VAL THR ARG LEU ALA LYS GLU VAL ALA SEQRES 8 A 188 LYS GLN CYS THR ASP LYS ARG ILE ARG THR ASN LEU LEU SEQRES 9 A 188 GLN VAL CYS GLU ARG ILE PRO THR ILE SER THR GLN LEU SEQRES 10 A 188 LYS ILE LEU SER THR VAL LYS ALA THR MET LEU GLY ARG SEQRES 11 A 188 THR ASN ILE SER ASP GLU GLU SER GLU GLN ALA THR GLU SEQRES 12 A 188 MET LEU VAL HIS ASN ALA GLN ASN LEU MET GLN SER VAL SEQRES 13 A 188 LYS GLU THR VAL ARG GLU ALA GLU ALA ALA SER ILE LYS SEQRES 14 A 188 ILE ARG THR ASP ALA GLY PHE THR LEU ARG TRP VAL ARG SEQRES 15 A 188 LYS THR PRO TRP TYR GLN SEQRES 1 B 188 GLU GLU LYS ASP GLU GLU PHE PRO GLU GLN LYS ALA GLY SEQRES 2 B 188 GLU VAL ILE ASN GLN PRO MET MET MET ALA ALA ARG GLN SEQRES 3 B 188 LEU HIS ASP GLU ALA ARG LYS TRP SER SER LYS GLY ASN SEQRES 4 B 188 ASP ILE ILE ALA ALA ALA LYS ARG MET ALA LEU LEU MET SEQRES 5 B 188 ALA GLU MET SER ARG LEU VAL ARG GLY GLY SER GLY THR SEQRES 6 B 188 LYS ARG ALA LEU ILE GLN CYS ALA LYS ASP ILE ALA LYS SEQRES 7 B 188 ALA SER ASP GLU VAL THR ARG LEU ALA LYS GLU VAL ALA SEQRES 8 B 188 LYS GLN CYS THR ASP LYS ARG ILE ARG THR ASN LEU LEU SEQRES 9 B 188 GLN VAL CYS GLU ARG ILE PRO THR ILE SER THR GLN LEU SEQRES 10 B 188 LYS ILE LEU SER THR VAL LYS ALA THR MET LEU GLY ARG SEQRES 11 B 188 THR ASN ILE SER ASP GLU GLU SER GLU GLN ALA THR GLU SEQRES 12 B 188 MET LEU VAL HIS ASN ALA GLN ASN LEU MET GLN SER VAL SEQRES 13 B 188 LYS GLU THR VAL ARG GLU ALA GLU ALA ALA SER ILE LYS SEQRES 14 B 188 ILE ARG THR ASP ALA GLY PHE THR LEU ARG TRP VAL ARG SEQRES 15 B 188 LYS THR PRO TRP TYR GLN SEQRES 1 C 188 GLU GLU LYS ASP GLU GLU PHE PRO GLU GLN LYS ALA GLY SEQRES 2 C 188 GLU VAL ILE ASN GLN PRO MET MET MET ALA ALA ARG GLN SEQRES 3 C 188 LEU HIS ASP GLU ALA ARG LYS TRP SER SER LYS GLY ASN SEQRES 4 C 188 ASP ILE ILE ALA ALA ALA LYS ARG MET ALA LEU LEU MET SEQRES 5 C 188 ALA GLU MET SER ARG LEU VAL ARG GLY GLY SER GLY THR SEQRES 6 C 188 LYS ARG ALA LEU ILE GLN CYS ALA LYS ASP ILE ALA LYS SEQRES 7 C 188 ALA SER ASP GLU VAL THR ARG LEU ALA LYS GLU VAL ALA SEQRES 8 C 188 LYS GLN CYS THR ASP LYS ARG ILE ARG THR ASN LEU LEU SEQRES 9 C 188 GLN VAL CYS GLU ARG ILE PRO THR ILE SER THR GLN LEU SEQRES 10 C 188 LYS ILE LEU SER THR VAL LYS ALA THR MET LEU GLY ARG SEQRES 11 C 188 THR ASN ILE SER ASP GLU GLU SER GLU GLN ALA THR GLU SEQRES 12 C 188 MET LEU VAL HIS ASN ALA GLN ASN LEU MET GLN SER VAL SEQRES 13 C 188 LYS GLU THR VAL ARG GLU ALA GLU ALA ALA SER ILE LYS SEQRES 14 C 188 ILE ARG THR ASP ALA GLY PHE THR LEU ARG TRP VAL ARG SEQRES 15 C 188 LYS THR PRO TRP TYR GLN SEQRES 1 D 188 GLU GLU LYS ASP GLU GLU PHE PRO GLU GLN LYS ALA GLY SEQRES 2 D 188 GLU VAL ILE ASN GLN PRO MET MET MET ALA ALA ARG GLN SEQRES 3 D 188 LEU HIS ASP GLU ALA ARG LYS TRP SER SER LYS GLY ASN SEQRES 4 D 188 ASP ILE ILE ALA ALA ALA LYS ARG MET ALA LEU LEU MET SEQRES 5 D 188 ALA GLU MET SER ARG LEU VAL ARG GLY GLY SER GLY THR SEQRES 6 D 188 LYS ARG ALA LEU ILE GLN CYS ALA LYS ASP ILE ALA LYS SEQRES 7 D 188 ALA SER ASP GLU VAL THR ARG LEU ALA LYS GLU VAL ALA SEQRES 8 D 188 LYS GLN CYS THR ASP LYS ARG ILE ARG THR ASN LEU LEU SEQRES 9 D 188 GLN VAL CYS GLU ARG ILE PRO THR ILE SER THR GLN LEU SEQRES 10 D 188 LYS ILE LEU SER THR VAL LYS ALA THR MET LEU GLY ARG SEQRES 11 D 188 THR ASN ILE SER ASP GLU GLU SER GLU GLN ALA THR GLU SEQRES 12 D 188 MET LEU VAL HIS ASN ALA GLN ASN LEU MET GLN SER VAL SEQRES 13 D 188 LYS GLU THR VAL ARG GLU ALA GLU ALA ALA SER ILE LYS SEQRES 14 D 188 ILE ARG THR ASP ALA GLY PHE THR LEU ARG TRP VAL ARG SEQRES 15 D 188 LYS THR PRO TRP TYR GLN SEQRES 1 E 74 HIS MET ARG LYS ILE LEU ILE ARG GLY LEU PRO GLY ASP SEQRES 2 E 74 VAL THR ASN GLN GLU VAL HIS ASP LEU LEU SER ASP TYR SEQRES 3 E 74 GLU LEU LYS TYR CYS PHE VAL ASP LYS TYR LYS GLY THR SEQRES 4 E 74 ALA PHE VAL THR LEU LEU ASN GLY GLU GLN ALA GLU ALA SEQRES 5 E 74 ALA ILE ASN ALA PHE HIS GLN SER ARG LEU ARG GLU ARG SEQRES 6 E 74 GLU LEU SER VAL GLN LEU GLN PRO THR SEQRES 1 F 74 HIS MET ARG LYS ILE LEU ILE ARG GLY LEU PRO GLY ASP SEQRES 2 F 74 VAL THR ASN GLN GLU VAL HIS ASP LEU LEU SER ASP TYR SEQRES 3 F 74 GLU LEU LYS TYR CYS PHE VAL ASP LYS TYR LYS GLY THR SEQRES 4 F 74 ALA PHE VAL THR LEU LEU ASN GLY GLU GLN ALA GLU ALA SEQRES 5 F 74 ALA ILE ASN ALA PHE HIS GLN SER ARG LEU ARG GLU ARG SEQRES 6 F 74 GLU LEU SER VAL GLN LEU GLN PRO THR SEQRES 1 G 74 HIS MET ARG LYS ILE LEU ILE ARG GLY LEU PRO GLY ASP SEQRES 2 G 74 VAL THR ASN GLN GLU VAL HIS ASP LEU LEU SER ASP TYR SEQRES 3 G 74 GLU LEU LYS TYR CYS PHE VAL ASP LYS TYR LYS GLY THR SEQRES 4 G 74 ALA PHE VAL THR LEU LEU ASN GLY GLU GLN ALA GLU ALA SEQRES 5 G 74 ALA ILE ASN ALA PHE HIS GLN SER ARG LEU ARG GLU ARG SEQRES 6 G 74 GLU LEU SER VAL GLN LEU GLN PRO THR SEQRES 1 H 74 HIS MET ARG LYS ILE LEU ILE ARG GLY LEU PRO GLY ASP SEQRES 2 H 74 VAL THR ASN GLN GLU VAL HIS ASP LEU LEU SER ASP TYR SEQRES 3 H 74 GLU LEU LYS TYR CYS PHE VAL ASP LYS TYR LYS GLY THR SEQRES 4 H 74 ALA PHE VAL THR LEU LEU ASN GLY GLU GLN ALA GLU ALA SEQRES 5 H 74 ALA ILE ASN ALA PHE HIS GLN SER ARG LEU ARG GLU ARG SEQRES 6 H 74 GLU LEU SER VAL GLN LEU GLN PRO THR FORMUL 9 HOH *4(H2 O) HELIX 1 1 ASN A 895 ARG A 910 1 16 HELIX 2 2 ASN A 917 VAL A 937 1 21 HELIX 3 3 GLY A 942 CYS A 972 1 31 HELIX 4 4 ASP A 974 LEU A 1006 1 33 HELIX 5 5 SER A 1012 ALA A 1044 1 33 HELIX 6 6 ASN B 895 ARG B 910 1 16 HELIX 7 7 ASN B 917 VAL B 937 1 21 HELIX 8 8 GLY B 942 CYS B 972 1 31 HELIX 9 9 ASP B 974 LEU B 1006 1 33 HELIX 10 10 SER B 1012 ALA B 1044 1 33 HELIX 11 11 ASN C 895 LYS C 911 1 17 HELIX 12 12 ASN C 917 VAL C 937 1 21 HELIX 13 13 GLY C 942 CYS C 972 1 31 HELIX 14 14 ASP C 974 CYS C 985 1 12 HELIX 15 15 GLU C 986 LEU C 1006 1 21 HELIX 16 16 SER C 1012 ALA C 1044 1 33 HELIX 17 17 ASN D 895 ARG D 910 1 16 HELIX 18 18 ASN D 917 VAL D 937 1 21 HELIX 19 19 GLY D 942 CYS D 972 1 31 HELIX 20 20 ASP D 974 LEU D 1006 1 33 HELIX 21 21 SER D 1012 ALA D 1044 1 33 HELIX 22 22 THR E 71 LEU E 79 1 9 HELIX 23 23 ASN E 102 HIS E 114 1 13 HELIX 24 24 THR F 71 LEU F 79 1 9 HELIX 25 25 ASN F 102 HIS F 114 1 13 HELIX 26 26 THR G 71 LEU G 79 1 9 HELIX 27 27 ASN G 102 HIS G 114 1 13 HELIX 28 28 THR H 71 LEU H 79 1 9 HELIX 29 29 ASN H 102 HIS H 114 1 13 SHEET 1 A 4 TYR E 86 ASP E 90 0 SHEET 2 A 4 THR E 95 THR E 99 -1 O THR E 95 N ASP E 90 SHEET 3 A 4 LYS E 60 ARG E 64 -1 N ILE E 63 O ALA E 96 SHEET 4 A 4 SER E 124 LEU E 127 -1 O GLN E 126 N LEU E 62 SHEET 1 B 2 ARG E 117 LEU E 118 0 SHEET 2 B 2 ARG E 121 GLU E 122 -1 O ARG E 121 N LEU E 118 SHEET 1 C 4 LEU F 84 ASP F 90 0 SHEET 2 C 4 THR F 95 LEU F 100 -1 O THR F 95 N ASP F 90 SHEET 3 C 4 LYS F 60 ARG F 64 -1 N ILE F 63 O ALA F 96 SHEET 4 C 4 SER F 124 LEU F 127 -1 O GLN F 126 N LEU F 62 SHEET 1 D 2 ARG F 117 LEU F 118 0 SHEET 2 D 2 ARG F 121 GLU F 122 -1 O ARG F 121 N LEU F 118 SHEET 1 E 4 LEU G 84 ASP G 90 0 SHEET 2 E 4 THR G 95 LEU G 100 -1 O THR G 99 N LYS G 85 SHEET 3 E 4 LYS G 60 ARG G 64 -1 N ILE G 63 O ALA G 96 SHEET 4 E 4 SER G 124 LEU G 127 -1 O GLN G 126 N LEU G 62 SHEET 1 F 2 ARG G 117 LEU G 118 0 SHEET 2 F 2 ARG G 121 GLU G 122 -1 O ARG G 121 N LEU G 118 SHEET 1 G 4 LEU H 84 ASP H 90 0 SHEET 2 G 4 THR H 95 LEU H 100 -1 O THR H 95 N ASP H 90 SHEET 3 G 4 LYS H 60 ARG H 64 -1 N ILE H 63 O ALA H 96 SHEET 4 G 4 SER H 124 LEU H 127 -1 O GLN H 126 N LEU H 62 SHEET 1 H 2 ARG H 117 LEU H 118 0 SHEET 2 H 2 ARG H 121 GLU H 122 -1 O ARG H 121 N LEU H 118 CISPEP 1 SER D 941 GLY D 942 0 -7.77 CISPEP 2 ALA D 1052 GLY D 1053 0 2.25 CRYST1 41.818 70.921 99.342 89.77 90.04 104.04 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023913 0.005980 -0.000007 0.00000 SCALE2 0.000000 0.014534 -0.000058 0.00000 SCALE3 0.000000 0.000000 0.010066 0.00000