HEADER HYDROLASE 15-APR-09 3H2Y TITLE CRYSTAL STRUCTURE OF YQEH GTPASE FROM BACILLUS ANTHRACIS WITH DGDP TITLE 2 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS STR.; SOURCE 3 ORGANISM_TAXID: 260799; SOURCE 4 STRAIN: STERNE; SOURCE 5 GENE: BAS4233, BA_4562, GBAA4562, GBAA_4562, YQEH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS GTP-BINDING PROTEIN YQEH, POSSIBLY INVOLVED IN REPLICATION KEYWDS 2 INITIATION, CSGID, IDP90222, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 3 INFECTIOUS DISEASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.BRUNZELLE,S.M.ANDERSON,X.XU,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 22-NOV-23 3H2Y 1 REMARK REVDAT 3 06-SEP-23 3H2Y 1 REMARK LINK REVDAT 2 13-JUL-11 3H2Y 1 VERSN REVDAT 1 16-JUN-09 3H2Y 0 JRNL AUTH J.S.BRUNZELLE,S.M.ANDERSON,Z.WAWRZAK,U.XU,H.CUI,A.SAVCHENKO, JRNL AUTH 2 W.F.ANDERSON JRNL TITL STRUCTURE OF YQEH GTPASE FROM BACILLUS ANTHRACIS WITH DGDP JRNL TITL 2 BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 32293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : -2.91000 REMARK 3 B33 (A**2) : 2.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.043 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2504 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3407 ; 1.215 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 3.664 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;30.289 ;24.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;10.966 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1894 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1110 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1688 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 140 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.135 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.252 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1595 ; 0.471 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2498 ; 0.740 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1042 ; 1.224 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 909 ; 1.819 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0433 0.6056 -6.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: -0.0642 REMARK 3 T33: 0.2178 T12: 0.1022 REMARK 3 T13: 0.1274 T23: 0.1770 REMARK 3 L TENSOR REMARK 3 L11: 14.7257 L22: 42.1940 REMARK 3 L33: 3.1765 L12: 8.9058 REMARK 3 L13: 2.3138 L23: 0.5566 REMARK 3 S TENSOR REMARK 3 S11: 0.3226 S12: 0.6982 S13: 0.8482 REMARK 3 S21: -1.6656 S22: -0.5784 S23: -2.4286 REMARK 3 S31: -0.4436 S32: -0.5201 S33: 0.2558 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9578 -4.8082 11.3609 REMARK 3 T TENSOR REMARK 3 T11: -0.1707 T22: -0.1594 REMARK 3 T33: -0.1423 T12: 0.1276 REMARK 3 T13: 0.0497 T23: 0.0938 REMARK 3 L TENSOR REMARK 3 L11: 3.2450 L22: 4.4628 REMARK 3 L33: 4.0673 L12: -0.5418 REMARK 3 L13: 0.4686 L23: -0.4058 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: -0.4024 S13: -0.2409 REMARK 3 S21: 0.5151 S22: 0.2747 S23: 0.6361 REMARK 3 S31: -0.3459 S32: -0.5923 S33: -0.1377 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3863 -13.8540 7.0414 REMARK 3 T TENSOR REMARK 3 T11: -0.2888 T22: -0.2672 REMARK 3 T33: -0.1594 T12: 0.0102 REMARK 3 T13: -0.0172 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 2.3404 L22: 2.3779 REMARK 3 L33: 2.5500 L12: -0.5513 REMARK 3 L13: 0.1944 L23: -0.1608 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: -0.1637 S13: -0.4115 REMARK 3 S21: 0.2076 S22: 0.1185 S23: 0.1452 REMARK 3 S31: 0.0652 S32: -0.0152 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0469 -14.6656 -3.8938 REMARK 3 T TENSOR REMARK 3 T11: -0.3732 T22: -0.1880 REMARK 3 T33: -0.1368 T12: 0.0087 REMARK 3 T13: -0.0160 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 15.3165 L22: 4.7359 REMARK 3 L33: 13.5065 L12: 2.6456 REMARK 3 L13: -4.0893 L23: -4.1382 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: 0.4404 S13: 0.3380 REMARK 3 S21: 0.3196 S22: 0.3853 S23: 0.0278 REMARK 3 S31: -0.0299 S32: -0.1753 S33: -0.4413 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2777 -14.1306 -4.0203 REMARK 3 T TENSOR REMARK 3 T11: -0.3332 T22: -0.2450 REMARK 3 T33: -0.2235 T12: -0.0388 REMARK 3 T13: -0.0112 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 4.5582 L22: 24.4006 REMARK 3 L33: 7.4482 L12: 4.0570 REMARK 3 L13: 0.2988 L23: 7.0351 REMARK 3 S TENSOR REMARK 3 S11: -0.1890 S12: 0.4211 S13: -0.5161 REMARK 3 S21: -0.6967 S22: 0.5568 S23: -0.6885 REMARK 3 S31: -0.2500 S32: 0.3706 S33: -0.3678 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 221 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8479 6.4153 29.3294 REMARK 3 T TENSOR REMARK 3 T11: 0.8147 T22: 0.1480 REMARK 3 T33: -0.1900 T12: 0.2380 REMARK 3 T13: -0.0069 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.5966 L22: 2.7806 REMARK 3 L33: 8.5879 L12: 1.2933 REMARK 3 L13: 0.4634 L23: 0.9372 REMARK 3 S TENSOR REMARK 3 S11: -0.2612 S12: -0.6102 S13: -0.1237 REMARK 3 S21: 1.1930 S22: -0.0545 S23: 0.0533 REMARK 3 S31: -1.0051 S32: -0.1969 S33: 0.3157 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3747 16.2822 28.5529 REMARK 3 T TENSOR REMARK 3 T11: 1.2171 T22: -0.1659 REMARK 3 T33: 0.5647 T12: 0.2048 REMARK 3 T13: -0.1405 T23: 0.1492 REMARK 3 L TENSOR REMARK 3 L11: 6.1271 L22: 1.9217 REMARK 3 L33: 11.5509 L12: -0.8461 REMARK 3 L13: 0.0115 L23: 3.3616 REMARK 3 S TENSOR REMARK 3 S11: 0.2163 S12: -0.3762 S13: 0.5550 REMARK 3 S21: 0.2665 S22: 0.0550 S23: 0.3087 REMARK 3 S31: -1.6685 S32: -0.3092 S33: -0.2712 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 332 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): -23.1120 5.6955 26.5148 REMARK 3 T TENSOR REMARK 3 T11: 0.6329 T22: 0.2638 REMARK 3 T33: -0.5514 T12: 0.4707 REMARK 3 T13: 0.1041 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 6.4032 L22: 12.1824 REMARK 3 L33: 6.3976 L12: 2.3742 REMARK 3 L13: -0.7530 L23: 3.7917 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: -0.6094 S13: -0.1146 REMARK 3 S21: 1.3516 S22: -0.3628 S23: 0.4659 REMARK 3 S31: -1.3263 S32: -1.0354 S33: 0.4805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.090 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.13 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3EC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE PH 5.8, 25% PEG 3350, REMARK 280 4% ISOPROPANAL, 2MM D-GTP, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.56500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.56500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 CYS A 7 REMARK 465 ILE A 8 REMARK 465 GLY A 9 REMARK 465 CYS A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 ILE A 14 REMARK 465 GLN A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ASP A 18 REMARK 465 LYS A 19 REMARK 465 ASN A 20 REMARK 465 GLU A 21 REMARK 465 VAL A 22 REMARK 465 GLY A 23 REMARK 465 TYR A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 26 REMARK 465 ALA A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 LEU A 30 REMARK 465 GLU A 31 REMARK 465 LYS A 32 REMARK 465 GLU A 33 REMARK 465 GLN A 34 REMARK 465 VAL A 35 REMARK 465 ILE A 36 REMARK 465 CYS A 37 REMARK 465 GLN A 38 REMARK 465 ARG A 39 REMARK 465 CYS A 40 REMARK 465 PHE A 41 REMARK 465 ARG A 42 REMARK 465 LEU A 43 REMARK 465 LYS A 44 REMARK 465 HIS A 45 REMARK 465 TYR A 46 REMARK 465 ASN A 47 REMARK 465 GLU A 48 REMARK 465 ILE A 49 REMARK 465 GLN A 50 REMARK 465 ASP A 51 REMARK 465 VAL A 52 REMARK 465 SER A 53 REMARK 465 LEU A 54 REMARK 465 THR A 55 REMARK 465 GLY A 199 REMARK 465 THR A 200 REMARK 465 THR A 201 REMARK 465 LEU A 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LEU A 252 CB CG CD1 CD2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 357 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 68 CG CD CE NZ REMARK 480 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 331 CD CE NZ REMARK 480 LYS A 365 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 92 O HOH A 493 4455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 328 CB ARG A 328 CG -0.249 REMARK 500 LYS A 331 CG LYS A 331 CD -0.350 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 328 CA - CB - CG ANGL. DEV. = 19.3 DEGREES REMARK 500 LYS A 331 CB - CG - CD ANGL. DEV. = 19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 53.24 -147.16 REMARK 500 LYS A 105 32.02 78.57 REMARK 500 GLU A 255 39.24 72.50 REMARK 500 SER A 261 -156.71 58.41 REMARK 500 ASP A 304 -79.81 -120.07 REMARK 500 ASN A 316 38.52 -99.33 REMARK 500 LYS A 331 76.90 56.72 REMARK 500 LEU A 339 -58.84 -122.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGI A 369 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90222 RELATED DB: TARGETDB DBREF 3H2Y A 1 368 UNP Q81LQ0 Q81LQ0_BACAN 1 368 SEQRES 1 A 368 MSE THR GLU THR ILE LYS CYS ILE GLY CYS GLY VAL GLU SEQRES 2 A 368 ILE GLN THR GLU ASP LYS ASN GLU VAL GLY TYR ALA PRO SEQRES 3 A 368 ALA SER SER LEU GLU LYS GLU GLN VAL ILE CYS GLN ARG SEQRES 4 A 368 CYS PHE ARG LEU LYS HIS TYR ASN GLU ILE GLN ASP VAL SEQRES 5 A 368 SER LEU THR ASP ASP ASP PHE LEU ARG ILE LEU ASN GLY SEQRES 6 A 368 ILE GLY LYS SER ASP ALA LEU VAL VAL LYS ILE VAL ASP SEQRES 7 A 368 ILE PHE ASP PHE ASN GLY SER TRP LEU PRO GLY LEU HIS SEQRES 8 A 368 ARG PHE VAL GLY ASN ASN LYS VAL LEU LEU VAL GLY ASN SEQRES 9 A 368 LYS ALA ASP LEU ILE PRO LYS SER VAL LYS HIS ASP LYS SEQRES 10 A 368 VAL LYS HIS TRP MSE ARG TYR SER ALA LYS GLN LEU GLY SEQRES 11 A 368 LEU LYS PRO GLU ASP VAL PHE LEU ILE SER ALA ALA LYS SEQRES 12 A 368 GLY GLN GLY ILE ALA GLU LEU ALA ASP ALA ILE GLU TYR SEQRES 13 A 368 TYR ARG GLY GLY LYS ASP VAL TYR VAL VAL GLY CYS THR SEQRES 14 A 368 ASN VAL GLY LYS SER THR PHE ILE ASN ARG MSE ILE LYS SEQRES 15 A 368 GLU PHE SER ASP GLU THR GLU ASN VAL ILE THR THR SER SEQRES 16 A 368 HIS PHE PRO GLY THR THR LEU ASP LEU ILE ASP ILE PRO SEQRES 17 A 368 LEU ASP GLU GLU SER SER LEU TYR ASP THR PRO GLY ILE SEQRES 18 A 368 ILE ASN HIS HIS GLN MSE ALA HIS TYR VAL GLY LYS GLN SEQRES 19 A 368 SER LEU LYS LEU ILE THR PRO THR LYS GLU ILE LYS PRO SEQRES 20 A 368 MSE VAL PHE GLN LEU ASN GLU GLU GLN THR LEU PHE PHE SEQRES 21 A 368 SER GLY LEU ALA ARG PHE ASP TYR VAL SER GLY GLY ARG SEQRES 22 A 368 ARG ALA PHE THR CYS HIS PHE SER ASN ARG LEU THR ILE SEQRES 23 A 368 HIS ARG THR LYS LEU GLU LYS ALA ASP GLU LEU TYR LYS SEQRES 24 A 368 ASN HIS ALA GLY ASP LEU LEU SER PRO PRO THR PRO GLU SEQRES 25 A 368 GLU LEU GLU ASN MSE PRO GLU LEU VAL LYS TYR GLU PHE SEQRES 26 A 368 ASN ILE ARG GLU PRO LYS THR ASP VAL VAL PHE SER GLY SEQRES 27 A 368 LEU GLY TRP VAL THR VAL ASN GLU PRO GLY ALA LYS ILE SEQRES 28 A 368 VAL ALA HIS VAL PRO LYS GLY VAL SER VAL SER LEU ARG SEQRES 29 A 368 LYS SER LEU ILE MODRES 3H2Y MSE A 122 MET SELENOMETHIONINE MODRES 3H2Y MSE A 180 MET SELENOMETHIONINE MODRES 3H2Y MSE A 227 MET SELENOMETHIONINE MODRES 3H2Y MSE A 248 MET SELENOMETHIONINE MODRES 3H2Y MSE A 317 MET SELENOMETHIONINE HET MSE A 122 8 HET MSE A 180 8 HET MSE A 227 8 HET MSE A 248 8 HET MSE A 317 8 HET DGI A 369 27 HETNAM MSE SELENOMETHIONINE HETNAM DGI 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 DGI C10 H15 N5 O10 P2 FORMUL 3 HOH *126(H2 O) HELIX 1 1 ASP A 56 SER A 69 1 14 HELIX 2 2 ASP A 81 TRP A 86 1 6 HELIX 3 3 GLY A 89 VAL A 94 1 6 HELIX 4 4 LYS A 105 ILE A 109 5 5 HELIX 5 5 LYS A 114 LEU A 129 1 16 HELIX 6 6 GLY A 146 GLY A 159 1 14 HELIX 7 7 GLY A 172 SER A 185 1 14 HELIX 8 8 GLN A 226 VAL A 231 5 6 HELIX 9 9 GLY A 232 THR A 240 1 9 HELIX 10 10 LEU A 291 ALA A 302 1 12 HELIX 11 11 THR A 310 ASN A 316 1 7 SHEET 1 A 7 ASP A 135 LEU A 138 0 SHEET 2 A 7 VAL A 99 ASN A 104 1 N GLY A 103 O PHE A 137 SHEET 3 A 7 LEU A 72 ASP A 78 1 N LYS A 75 O VAL A 102 SHEET 4 A 7 VAL A 163 GLY A 167 1 O TYR A 164 N VAL A 74 SHEET 5 A 7 SER A 214 ASP A 217 1 O TYR A 216 N VAL A 163 SHEET 6 A 7 LEU A 204 PRO A 208 -1 N ILE A 207 O LEU A 215 SHEET 7 A 7 THR A 193 SER A 195 -1 N THR A 193 O ASP A 206 SHEET 1 B 5 MSE A 248 LEU A 252 0 SHEET 2 B 5 ARG A 274 PHE A 280 -1 O CYS A 278 N MSE A 248 SHEET 3 B 5 GLY A 340 VAL A 344 -1 O THR A 343 N THR A 277 SHEET 4 B 5 THR A 332 PHE A 336 -1 N VAL A 334 O VAL A 342 SHEET 5 B 5 VAL A 361 LYS A 365 -1 O SER A 362 N VAL A 335 SHEET 1 C 5 ILE A 286 LYS A 290 0 SHEET 2 C 5 GLN A 256 PHE A 260 -1 N THR A 257 O THR A 289 SHEET 3 C 5 ALA A 264 SER A 270 -1 O PHE A 266 N LEU A 258 SHEET 4 C 5 LYS A 350 PRO A 356 -1 O HIS A 354 N ARG A 265 SHEET 5 C 5 LEU A 320 ASN A 326 -1 N VAL A 321 O VAL A 355 LINK C TRP A 121 N MSE A 122 1555 1555 1.34 LINK C MSE A 122 N ARG A 123 1555 1555 1.33 LINK C ARG A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N ILE A 181 1555 1555 1.34 LINK C GLN A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N ALA A 228 1555 1555 1.33 LINK C PRO A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N VAL A 249 1555 1555 1.33 LINK C ASN A 316 N MSE A 317 1555 1555 1.33 LINK C MSE A 317 N PRO A 318 1555 1555 1.35 CISPEP 1 SER A 307 PRO A 308 0 0.57 CISPEP 2 PRO A 308 PRO A 309 0 3.80 SITE 1 AC1 21 ASN A 104 LYS A 105 ASP A 107 LEU A 108 SITE 2 AC1 21 SER A 140 ALA A 141 ALA A 142 CYS A 168 SITE 3 AC1 21 THR A 169 ASN A 170 VAL A 171 GLY A 172 SITE 4 AC1 21 LYS A 173 SER A 174 THR A 175 HIS A 196 SITE 5 AC1 21 HOH A 372 HOH A 375 HOH A 417 HOH A 427 SITE 6 AC1 21 HOH A 437 CRYST1 83.130 58.990 77.720 90.00 99.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012029 0.000000 0.001987 0.00000 SCALE2 0.000000 0.016952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013041 0.00000