data_3H36 # _entry.id 3H36 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3H36 RCSB RCSB052633 WWPDB D_1000052633 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc63929.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3H36 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Hatzos, C.' 2 'Jedrzejczak, R.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Structure of an uncharacterized domain in polyribonucleotide nucleotidyltransferase from Streptococcus mutans UA159' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Hatzos, C.' 2 primary 'Jedrzejczak, R.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 59.312 _cell.length_b 59.312 _cell.length_c 93.090 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3H36 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 3H36 _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Polyribonucleotide nucleotidyltransferase' 10867.694 1 2.7.7.8 ? 'residues 231-320' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 90 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Polynucleotide phosphorylase, PNPase, 1.10.10.400.hmm mega family domain' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAVELLQVDADLQAEIVGKYNADLQKAVQIEEKKASEIATEAVKEHVTAEYEERYAEHEEHDRI(MSE)RDVAEILEQ (MSE)EHAEVRRLITEDKVRPD ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAVELLQVDADLQAEIVGKYNADLQKAVQIEEKKASEIATEAVKEHVTAEYEERYAEHEEHDRIMRDVAEILEQMEHAE VRRLITEDKVRPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc63929.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 VAL n 1 5 GLU n 1 6 LEU n 1 7 LEU n 1 8 GLN n 1 9 VAL n 1 10 ASP n 1 11 ALA n 1 12 ASP n 1 13 LEU n 1 14 GLN n 1 15 ALA n 1 16 GLU n 1 17 ILE n 1 18 VAL n 1 19 GLY n 1 20 LYS n 1 21 TYR n 1 22 ASN n 1 23 ALA n 1 24 ASP n 1 25 LEU n 1 26 GLN n 1 27 LYS n 1 28 ALA n 1 29 VAL n 1 30 GLN n 1 31 ILE n 1 32 GLU n 1 33 GLU n 1 34 LYS n 1 35 LYS n 1 36 ALA n 1 37 SER n 1 38 GLU n 1 39 ILE n 1 40 ALA n 1 41 THR n 1 42 GLU n 1 43 ALA n 1 44 VAL n 1 45 LYS n 1 46 GLU n 1 47 HIS n 1 48 VAL n 1 49 THR n 1 50 ALA n 1 51 GLU n 1 52 TYR n 1 53 GLU n 1 54 GLU n 1 55 ARG n 1 56 TYR n 1 57 ALA n 1 58 GLU n 1 59 HIS n 1 60 GLU n 1 61 GLU n 1 62 HIS n 1 63 ASP n 1 64 ARG n 1 65 ILE n 1 66 MSE n 1 67 ARG n 1 68 ASP n 1 69 VAL n 1 70 ALA n 1 71 GLU n 1 72 ILE n 1 73 LEU n 1 74 GLU n 1 75 GLN n 1 76 MSE n 1 77 GLU n 1 78 HIS n 1 79 ALA n 1 80 GLU n 1 81 VAL n 1 82 ARG n 1 83 ARG n 1 84 LEU n 1 85 ILE n 1 86 THR n 1 87 GLU n 1 88 ASP n 1 89 LYS n 1 90 VAL n 1 91 ARG n 1 92 PRO n 1 93 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pnp, pnpA, SMU_155' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain UA159 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus mutans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1309 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PNP_STRMU _struct_ref.pdbx_db_accession Q8DWB2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VELLQVDADLQAEIVGKYNADLQKAVQIEEKKAREIATEAVKEHVTAEYEERYAEHEEHDRIMRDVAEILEQMEHAEVRR LITEDKVRPD ; _struct_ref.pdbx_align_begin 231 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3H36 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8DWB2 _struct_ref_seq.db_align_beg 231 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 320 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 231 _struct_ref_seq.pdbx_auth_seq_align_end 320 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3H36 SER A 1 ? UNP Q8DWB2 ? ? 'expression tag' 228 1 1 3H36 ASN A 2 ? UNP Q8DWB2 ? ? 'expression tag' 229 2 1 3H36 ALA A 3 ? UNP Q8DWB2 ? ? 'expression tag' 230 3 1 3H36 SER A 37 ? UNP Q8DWB2 ARG 264 'see remark 999' 264 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3H36 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Na Cacodylate pH6.5,0.2M Ca Acetate, 40% PEG 3000, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-03-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97945 1.0 2 0.97931 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97945,0.97931 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3H36 _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 50.000 _reflns.number_obs 11267 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_netI_over_sigmaI 65.500 _reflns.pdbx_chi_squared 2.246 _reflns.pdbx_redundancy 22.700 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 11267 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 28.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.73 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.671 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.824 _reflns_shell.pdbx_redundancy 22.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 541 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3H36 _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 44.990 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.780 _refine.ls_number_reflns_obs 9492 _refine.ls_number_reflns_all 9492 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all 0.201 _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_R_work 0.199 _refine.ls_wR_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.236 _refine.ls_wR_factor_R_free 0.237 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 460 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.850 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.360 _refine.aniso_B[2][2] 1.360 _refine.aniso_B[3][3] -2.030 _refine.aniso_B[1][2] 0.680 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.overall_SU_R_Cruickshank_DPI 0.139 _refine.overall_SU_R_free 0.129 _refine.pdbx_overall_ESU_R 0.133 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.overall_SU_ML 0.080 _refine.overall_SU_B 5.494 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.908 _refine.B_iso_max 73.28 _refine.B_iso_min 13.21 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 633 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 728 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 44.990 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 703 0.019 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 477 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 951 1.538 1.950 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1170 0.956 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 89 4.515 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42 39.158 25.476 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 139 12.808 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 25.032 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 103 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 817 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 133 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 424 0.869 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 168 0.258 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 687 1.822 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 279 3.357 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 264 5.846 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.850 _refine_ls_shell.number_reflns_R_work 649 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.197 _refine_ls_shell.R_factor_R_free 0.359 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 679 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3H36 _struct.title 'Structure of an uncharacterized domain in polyribonucleotide nucleotidyltransferase from Streptococcus mutans UA159' _struct.pdbx_descriptor 'Polyribonucleotide nucleotidyltransferase (E.C.2.7.7.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3H36 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Streptococcus mutans, polyribonucleotide nucleotidyltransferase, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Nucleotidyltransferase, RNA-binding, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? ILE A 31 ? ASP A 237 ILE A 258 1 ? 22 HELX_P HELX_P2 2 GLU A 33 ? ALA A 57 ? GLU A 260 ALA A 284 1 ? 25 HELX_P HELX_P3 3 GLU A 61 ? ILE A 85 ? GLU A 288 ILE A 312 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ILE 65 C ? ? ? 1_555 A MSE 66 N ? ? A ILE 292 A MSE 293 1_555 ? ? ? ? ? ? ? 1.320 ? covale2 covale ? ? A MSE 66 C ? ? ? 1_555 A ARG 67 N A ? A MSE 293 A ARG 294 1_555 ? ? ? ? ? ? ? 1.346 ? covale3 covale ? ? A MSE 66 C ? ? ? 1_555 A ARG 67 N B ? A MSE 293 A ARG 294 1_555 ? ? ? ? ? ? ? 1.343 ? covale4 covale ? ? A GLN 75 C A ? ? 1_555 A MSE 76 N ? ? A GLN 302 A MSE 303 1_555 ? ? ? ? ? ? ? 1.339 ? covale5 covale ? ? A GLN 75 C B ? ? 1_555 A MSE 76 N ? ? A GLN 302 A MSE 303 1_555 ? ? ? ? ? ? ? 1.339 ? covale6 covale ? ? A MSE 76 C ? ? ? 1_555 A GLU 77 N ? ? A MSE 303 A GLU 304 1_555 ? ? ? ? ? ? ? 1.334 ? metalc1 metalc ? ? A GLU 74 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 301 A CA 1 1_555 ? ? ? ? ? ? ? 2.172 ? metalc2 metalc ? ? A GLU 77 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 304 A CA 1 1_555 ? ? ? ? ? ? ? 2.368 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 1' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 321' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 2 . ? 12_565 ? 2 AC1 6 HOH D . ? HOH A 3 . ? 12_565 ? 3 AC1 6 GLU A 38 ? GLU A 265 . ? 12_565 ? 4 AC1 6 GLU A 74 ? GLU A 301 . ? 1_555 ? 5 AC1 6 GLU A 77 ? GLU A 304 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 322 . ? 12_565 ? 7 AC2 2 HOH D . ? HOH A 52 . ? 1_555 ? 8 AC2 2 ASP A 12 ? ASP A 239 . ? 1_555 ? # _atom_sites.entry_id 3H36 _atom_sites.fract_transf_matrix[1][1] 0.016860 _atom_sites.fract_transf_matrix[1][2] 0.009734 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019468 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010742 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 228 ? ? ? A . n A 1 2 ASN 2 229 ? ? ? A . n A 1 3 ALA 3 230 ? ? ? A . n A 1 4 VAL 4 231 ? ? ? A . n A 1 5 GLU 5 232 ? ? ? A . n A 1 6 LEU 6 233 ? ? ? A . n A 1 7 LEU 7 234 ? ? ? A . n A 1 8 GLN 8 235 235 GLN GLN A . n A 1 9 VAL 9 236 236 VAL VAL A . n A 1 10 ASP 10 237 237 ASP ASP A . n A 1 11 ALA 11 238 238 ALA ALA A . n A 1 12 ASP 12 239 239 ASP ASP A . n A 1 13 LEU 13 240 240 LEU LEU A . n A 1 14 GLN 14 241 241 GLN GLN A . n A 1 15 ALA 15 242 242 ALA ALA A . n A 1 16 GLU 16 243 243 GLU GLU A . n A 1 17 ILE 17 244 244 ILE ILE A . n A 1 18 VAL 18 245 245 VAL VAL A . n A 1 19 GLY 19 246 246 GLY GLY A . n A 1 20 LYS 20 247 247 LYS LYS A . n A 1 21 TYR 21 248 248 TYR TYR A . n A 1 22 ASN 22 249 249 ASN ASN A . n A 1 23 ALA 23 250 250 ALA ALA A . n A 1 24 ASP 24 251 251 ASP ASP A . n A 1 25 LEU 25 252 252 LEU LEU A . n A 1 26 GLN 26 253 253 GLN GLN A . n A 1 27 LYS 27 254 254 LYS LYS A . n A 1 28 ALA 28 255 255 ALA ALA A . n A 1 29 VAL 29 256 256 VAL VAL A . n A 1 30 GLN 30 257 257 GLN GLN A . n A 1 31 ILE 31 258 258 ILE ILE A . n A 1 32 GLU 32 259 259 GLU GLU A . n A 1 33 GLU 33 260 260 GLU GLU A . n A 1 34 LYS 34 261 261 LYS LYS A . n A 1 35 LYS 35 262 262 LYS LYS A . n A 1 36 ALA 36 263 263 ALA ALA A . n A 1 37 SER 37 264 264 SER SER A . n A 1 38 GLU 38 265 265 GLU GLU A . n A 1 39 ILE 39 266 266 ILE ILE A . n A 1 40 ALA 40 267 267 ALA ALA A . n A 1 41 THR 41 268 268 THR THR A . n A 1 42 GLU 42 269 269 GLU GLU A . n A 1 43 ALA 43 270 270 ALA ALA A . n A 1 44 VAL 44 271 271 VAL VAL A . n A 1 45 LYS 45 272 272 LYS LYS A . n A 1 46 GLU 46 273 273 GLU GLU A . n A 1 47 HIS 47 274 274 HIS HIS A . n A 1 48 VAL 48 275 275 VAL VAL A . n A 1 49 THR 49 276 276 THR THR A . n A 1 50 ALA 50 277 277 ALA ALA A . n A 1 51 GLU 51 278 278 GLU GLU A . n A 1 52 TYR 52 279 279 TYR TYR A . n A 1 53 GLU 53 280 280 GLU GLU A . n A 1 54 GLU 54 281 281 GLU GLU A . n A 1 55 ARG 55 282 282 ARG ARG A . n A 1 56 TYR 56 283 283 TYR TYR A . n A 1 57 ALA 57 284 284 ALA ALA A . n A 1 58 GLU 58 285 285 GLU GLU A . n A 1 59 HIS 59 286 286 HIS HIS A . n A 1 60 GLU 60 287 287 GLU GLU A . n A 1 61 GLU 61 288 288 GLU GLU A . n A 1 62 HIS 62 289 289 HIS HIS A . n A 1 63 ASP 63 290 290 ASP ASP A . n A 1 64 ARG 64 291 291 ARG ARG A . n A 1 65 ILE 65 292 292 ILE ILE A . n A 1 66 MSE 66 293 293 MSE MSE A . n A 1 67 ARG 67 294 294 ARG ARG A . n A 1 68 ASP 68 295 295 ASP ASP A . n A 1 69 VAL 69 296 296 VAL VAL A . n A 1 70 ALA 70 297 297 ALA ALA A . n A 1 71 GLU 71 298 298 GLU GLU A . n A 1 72 ILE 72 299 299 ILE ILE A . n A 1 73 LEU 73 300 300 LEU LEU A . n A 1 74 GLU 74 301 301 GLU GLU A . n A 1 75 GLN 75 302 302 GLN GLN A . n A 1 76 MSE 76 303 303 MSE MSE A . n A 1 77 GLU 77 304 304 GLU GLU A . n A 1 78 HIS 78 305 305 HIS HIS A . n A 1 79 ALA 79 306 306 ALA ALA A . n A 1 80 GLU 80 307 307 GLU GLU A . n A 1 81 VAL 81 308 308 VAL VAL A . n A 1 82 ARG 82 309 309 ARG ARG A . n A 1 83 ARG 83 310 310 ARG ARG A . n A 1 84 LEU 84 311 311 LEU LEU A . n A 1 85 ILE 85 312 312 ILE ILE A . n A 1 86 THR 86 313 ? ? ? A . n A 1 87 GLU 87 314 ? ? ? A . n A 1 88 ASP 88 315 ? ? ? A . n A 1 89 LYS 89 316 ? ? ? A . n A 1 90 VAL 90 317 ? ? ? A . n A 1 91 ARG 91 318 ? ? ? A . n A 1 92 PRO 92 319 ? ? ? A . n A 1 93 ASP 93 320 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1 1 CA CA A . C 3 EDO 1 321 1 EDO EDO A . D 4 HOH 1 2 2 HOH HOH A . D 4 HOH 2 3 3 HOH HOH A . D 4 HOH 3 4 4 HOH HOH A . D 4 HOH 4 5 5 HOH HOH A . D 4 HOH 5 6 6 HOH HOH A . D 4 HOH 6 7 7 HOH HOH A . D 4 HOH 7 8 8 HOH HOH A . D 4 HOH 8 9 9 HOH HOH A . D 4 HOH 9 10 10 HOH HOH A . D 4 HOH 10 11 11 HOH HOH A . D 4 HOH 11 12 12 HOH HOH A . D 4 HOH 12 13 13 HOH HOH A . D 4 HOH 13 14 14 HOH HOH A . D 4 HOH 14 15 15 HOH HOH A . D 4 HOH 15 16 16 HOH HOH A . D 4 HOH 16 17 17 HOH HOH A . D 4 HOH 17 18 18 HOH HOH A . D 4 HOH 18 19 19 HOH HOH A . D 4 HOH 19 20 20 HOH HOH A . D 4 HOH 20 21 21 HOH HOH A . D 4 HOH 21 22 22 HOH HOH A . D 4 HOH 22 23 23 HOH HOH A . D 4 HOH 23 24 24 HOH HOH A . D 4 HOH 24 25 25 HOH HOH A . D 4 HOH 25 26 26 HOH HOH A . D 4 HOH 26 27 27 HOH HOH A . D 4 HOH 27 28 28 HOH HOH A . D 4 HOH 28 29 29 HOH HOH A . D 4 HOH 29 30 30 HOH HOH A . D 4 HOH 30 31 31 HOH HOH A . D 4 HOH 31 32 32 HOH HOH A . D 4 HOH 32 33 33 HOH HOH A . D 4 HOH 33 34 34 HOH HOH A . D 4 HOH 34 35 35 HOH HOH A . D 4 HOH 35 36 36 HOH HOH A . D 4 HOH 36 37 37 HOH HOH A . D 4 HOH 37 38 38 HOH HOH A . D 4 HOH 38 39 39 HOH HOH A . D 4 HOH 39 40 40 HOH HOH A . D 4 HOH 40 41 41 HOH HOH A . D 4 HOH 41 42 42 HOH HOH A . D 4 HOH 42 43 43 HOH HOH A . D 4 HOH 43 44 44 HOH HOH A . D 4 HOH 44 45 45 HOH HOH A . D 4 HOH 45 46 46 HOH HOH A . D 4 HOH 46 47 47 HOH HOH A . D 4 HOH 47 48 48 HOH HOH A . D 4 HOH 48 49 49 HOH HOH A . D 4 HOH 49 50 50 HOH HOH A . D 4 HOH 50 51 51 HOH HOH A . D 4 HOH 51 52 52 HOH HOH A . D 4 HOH 52 53 53 HOH HOH A . D 4 HOH 53 54 54 HOH HOH A . D 4 HOH 54 55 55 HOH HOH A . D 4 HOH 55 56 56 HOH HOH A . D 4 HOH 56 57 57 HOH HOH A . D 4 HOH 57 58 58 HOH HOH A . D 4 HOH 58 59 59 HOH HOH A . D 4 HOH 59 60 60 HOH HOH A . D 4 HOH 60 61 61 HOH HOH A . D 4 HOH 61 62 62 HOH HOH A . D 4 HOH 62 63 63 HOH HOH A . D 4 HOH 63 64 64 HOH HOH A . D 4 HOH 64 65 65 HOH HOH A . D 4 HOH 65 66 66 HOH HOH A . D 4 HOH 66 67 67 HOH HOH A . D 4 HOH 67 68 68 HOH HOH A . D 4 HOH 68 69 69 HOH HOH A . D 4 HOH 69 70 70 HOH HOH A . D 4 HOH 70 71 71 HOH HOH A . D 4 HOH 71 72 72 HOH HOH A . D 4 HOH 72 73 73 HOH HOH A . D 4 HOH 73 74 74 HOH HOH A . D 4 HOH 74 75 75 HOH HOH A . D 4 HOH 75 76 76 HOH HOH A . D 4 HOH 76 77 77 HOH HOH A . D 4 HOH 77 78 78 HOH HOH A . D 4 HOH 78 79 79 HOH HOH A . D 4 HOH 79 80 80 HOH HOH A . D 4 HOH 80 81 81 HOH HOH A . D 4 HOH 81 82 82 HOH HOH A . D 4 HOH 82 83 83 HOH HOH A . D 4 HOH 83 84 84 HOH HOH A . D 4 HOH 84 85 85 HOH HOH A . D 4 HOH 85 86 86 HOH HOH A . D 4 HOH 86 87 87 HOH HOH A . D 4 HOH 87 88 88 HOH HOH A . D 4 HOH 88 89 89 HOH HOH A . D 4 HOH 89 90 90 HOH HOH A . D 4 HOH 90 322 1 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 66 A MSE 293 ? MET SELENOMETHIONINE 2 A MSE 76 A MSE 303 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D 2 1,3 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1730 ? 1 MORE -31 ? 1 'SSA (A^2)' 9400 ? 2 'ABSA (A^2)' 1550 ? 2 MORE -21 ? 2 'SSA (A^2)' 9590 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 -29.6560000000 0.8660254038 -0.5000000000 0.0000000000 51.3656987493 0.0000000000 0.0000000000 -1.0000000000 15.5150000000 3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.0300000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OE1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id GLU _pdbx_struct_conn_angle.ptnr1_label_seq_id 74 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr1_auth_seq_id 301 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id CA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id CA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id CA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 1 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OE1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id GLU _pdbx_struct_conn_angle.ptnr3_label_seq_id 77 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr3_auth_seq_id 304 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 86.8 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.700 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 21470 _diffrn_reflns.pdbx_Rmerge_I_obs 0.080 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.54 _diffrn_reflns.av_sigmaI_over_netI 65.50 _diffrn_reflns.pdbx_redundancy 11.90 _diffrn_reflns.pdbx_percent_possible_obs 99.90 _diffrn_reflns.number 255616 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.61 50.00 ? ? 0.071 ? 8.885 10.70 97.30 1 3.66 4.61 ? ? 0.056 ? 5.621 11.40 100.00 1 3.20 3.66 ? ? 0.075 ? 5.654 11.70 100.00 1 2.91 3.20 ? ? 0.079 ? 4.258 11.80 100.00 1 2.70 2.91 ? ? 0.092 ? 4.092 12.00 100.00 1 2.54 2.70 ? ? 0.090 ? 3.117 12.00 100.00 1 2.41 2.54 ? ? 0.086 ? 2.440 12.00 100.00 1 2.31 2.41 ? ? 0.089 ? 2.077 12.00 100.00 1 2.22 2.31 ? ? 0.098 ? 1.945 12.10 100.00 1 2.14 2.22 ? ? 0.111 ? 1.644 12.20 100.00 1 2.07 2.14 ? ? 0.115 ? 1.383 12.00 100.00 1 2.02 2.07 ? ? 0.140 ? 1.422 12.10 100.00 1 1.96 2.02 ? ? 0.166 ? 1.212 12.10 100.00 1 1.91 1.96 ? ? 0.213 ? 1.146 12.20 100.00 1 1.87 1.91 ? ? 0.254 ? 1.057 12.00 100.00 1 1.83 1.87 ? ? 0.293 ? 1.033 12.10 100.00 1 1.79 1.83 ? ? 0.370 ? 1.024 12.20 100.00 1 1.76 1.79 ? ? 0.470 ? 0.992 11.90 100.00 1 1.73 1.76 ? ? 0.560 ? 1.003 12.10 100.00 1 1.70 1.73 ? ? 0.657 ? 0.979 11.50 100.00 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 21.3691 33.4464 3.4772 0.0223 0.0580 0.0335 0.0168 -0.0220 -0.0069 1.3576 1.5531 5.9805 -0.2899 0.0403 1.3996 0.1187 0.0110 -0.1297 0.2564 -0.0536 0.0112 -0.0812 -0.0130 0.2179 'X-RAY DIFFRACTION' 2 ? refined 15.5087 35.0532 -1.8874 0.0483 0.0340 0.0538 0.0078 -0.0508 -0.0051 6.2109 2.9048 9.4842 2.0805 -2.3431 -1.5834 -0.0571 0.0817 -0.0246 0.3231 0.1017 0.3654 -0.3331 -0.0226 -0.4527 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' ? 1 1 A 227 A 287 . . . . ? 'X-RAY DIFFRACTION' ? 2 2 A 288 A 320 . . . . ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 1.70 50.00 8939 0.200 0.000 1.600 2263 0.200 0.000 1.000 2 1.70 50.00 8935 3.000 1.010 0.830 2262 4.700 0.940 0.700 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 10.99 50.00 14 0.700 0.000 1.330 38 0.400 0.000 1.000 1 6.17 10.99 117 0.600 0.000 1.210 108 0.400 0.000 1.000 1 4.29 6.17 326 0.600 0.000 1.450 177 0.400 0.000 1.000 1 3.29 4.29 640 0.400 0.000 1.280 257 0.300 0.000 1.000 1 2.67 3.29 1064 0.300 0.000 1.550 318 0.200 0.000 1.000 1 2.24 2.67 1591 0.200 0.000 1.710 389 0.100 0.000 1.000 1 1.93 2.24 2222 0.100 0.000 1.930 452 0.000 0.000 1.000 1 1.70 1.93 2965 0.100 0.000 2.720 524 0.000 0.000 1.000 2 10.99 50.00 14 8.700 1.810 0.740 37 7.800 1.970 0.540 2 6.17 10.99 116 9.000 1.590 0.880 108 10.100 1.310 0.700 2 4.29 6.17 326 6.000 1.810 0.750 177 7.700 1.450 0.550 2 3.29 4.29 640 4.400 1.810 0.660 257 5.500 1.320 0.600 2 2.67 3.29 1064 3.700 1.370 0.750 318 4.700 1.060 0.650 2 2.24 2.67 1591 2.500 1.220 0.790 389 3.500 0.920 0.710 2 1.93 2.24 2222 2.400 0.720 0.900 452 3.500 0.540 0.810 2 1.70 1.93 2962 2.600 0.360 0.980 524 4.000 0.250 0.960 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se 0.588 0.593 0.010 32.41669 0.000 2 Se 0.825 0.740 -0.056 41.62799 0.000 3 Se 0.589 0.593 0.011 34.78328 -0.132 4 Se 0.825 0.740 -0.056 39.02891 -0.114 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 10.99 50.00 52 0.574 38 0.567 14 0.593 6.17 10.99 225 0.568 108 0.445 117 0.682 4.29 6.17 503 0.684 177 0.523 326 0.771 3.29 4.29 897 0.755 257 0.609 640 0.814 2.67 3.29 1382 0.725 318 0.538 1064 0.781 2.24 2.67 1980 0.690 389 0.484 1591 0.740 1.93 2.24 2674 0.515 452 0.331 2222 0.552 1.70 1.93 3489 0.262 524 0.147 2965 0.282 # _pdbx_phasing_dm.entry_id 3H36 _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 11202 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.010 100.000 46.900 ? ? ? 0.803 ? ? 503 3.930 5.010 38.300 ? ? ? 0.926 ? ? 502 3.410 3.930 41.800 ? ? ? 0.920 ? ? 508 3.080 3.410 38.200 ? ? ? 0.919 ? ? 502 2.850 3.080 40.200 ? ? ? 0.915 ? ? 505 2.680 2.850 40.100 ? ? ? 0.905 ? ? 501 2.540 2.680 36.500 ? ? ? 0.902 ? ? 501 2.420 2.540 36.600 ? ? ? 0.912 ? ? 514 2.320 2.420 40.300 ? ? ? 0.909 ? ? 514 2.240 2.320 41.600 ? ? ? 0.905 ? ? 507 2.160 2.240 43.900 ? ? ? 0.881 ? ? 507 2.100 2.160 46.700 ? ? ? 0.873 ? ? 506 2.040 2.100 50.400 ? ? ? 0.880 ? ? 507 1.990 2.040 49.500 ? ? ? 0.869 ? ? 508 1.940 1.990 59.300 ? ? ? 0.851 ? ? 513 1.900 1.940 57.000 ? ? ? 0.832 ? ? 501 1.860 1.900 60.900 ? ? ? 0.816 ? ? 502 1.820 1.860 68.800 ? ? ? 0.816 ? ? 524 1.790 1.820 65.700 ? ? ? 0.804 ? ? 522 1.760 1.790 68.800 ? ? ? 0.827 ? ? 529 1.700 1.760 73.400 ? ? ? 0.735 ? ? 1026 # _phasing.method MAD # _phasing_MAD.entry_id 3H36 _phasing_MAD.pdbx_d_res_high 1.70 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 11202 _phasing_MAD.pdbx_fom 0.521 _phasing_MAD.pdbx_reflns_centric 2263 _phasing_MAD.pdbx_fom_centric 0.400 _phasing_MAD.pdbx_reflns_acentric 8939 _phasing_MAD.pdbx_fom_acentric 0.552 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MLPHARE . ? other 'Eleanor J. Dodson' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/mlphare.html Fortran_77 ? 4 DM 6.0 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 5 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 8 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 10 HKL-3000 . ? ? ? ? phasing ? ? ? 11 SHELXD . ? ? ? ? phasing ? ? ? 12 SHELXE . ? ? ? ? 'model building' ? ? ? 13 SOLVE . ? ? ? ? phasing ? ? ? 14 RESOLVE . ? ? ? ? phasing ? ? ? 15 ARP/wARP . ? ? ? ? 'model building' ? ? ? 16 CCP4 . ? ? ? ? phasing ? ? ? 17 O . ? ? ? ? 'model building' ? ? ? 18 Coot . ? ? ? ? 'model building' ? ? ? # _pdbx_entry_details.entry_id 3H36 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AUTHORS STATE THAT THE ELECTRON DENSITY MAPS IN THIS REGION ARE OF A HIGH QUALITY AND CLEARLY SHOW A SERINE IN THIS POSITION. THE HYDROGEN-BONDING PATTERN AROUND THE OG OF SER 264 IS ALSO CONSISTENT WITH THIS IDENTIFICATION. ARG AND SER CODONS DIFFER ONLY BY THE LAST BASE PAIR. AUTHORS ARE NOT SURE ABOUT WHETHER THIS DIFFERENCE OCCURRED DURING SEQUENCING OR CLONING. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 280 ? ? O A HOH 73 ? ? 2.09 2 1 OE2 A GLU 298 ? B O A HOH 74 ? ? 2.17 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 287 ? CG ? A GLU 60 CG 2 1 Y 1 A GLU 287 ? CD ? A GLU 60 CD 3 1 Y 1 A GLU 287 ? OE1 ? A GLU 60 OE1 4 1 Y 1 A GLU 287 ? OE2 ? A GLU 60 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 228 ? A SER 1 2 1 Y 1 A ASN 229 ? A ASN 2 3 1 Y 1 A ALA 230 ? A ALA 3 4 1 Y 1 A VAL 231 ? A VAL 4 5 1 Y 1 A GLU 232 ? A GLU 5 6 1 Y 1 A LEU 233 ? A LEU 6 7 1 Y 1 A LEU 234 ? A LEU 7 8 1 Y 1 A THR 313 ? A THR 86 9 1 Y 1 A GLU 314 ? A GLU 87 10 1 Y 1 A ASP 315 ? A ASP 88 11 1 Y 1 A LYS 316 ? A LYS 89 12 1 Y 1 A VAL 317 ? A VAL 90 13 1 Y 1 A ARG 318 ? A ARG 91 14 1 Y 1 A PRO 319 ? A PRO 92 15 1 Y 1 A ASP 320 ? A ASP 93 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 1,2-ETHANEDIOL EDO 4 water HOH #