HEADER UNKNOWN FUNCTION 16-APR-09 3H3H TITLE CRYSTAL STRUCTURE OF A SNOAL-LIKE PROTEIN OF UNKNOWN FUNCTION TITLE 2 (BTH_II0226) FROM BURKHOLDERIA THAILANDENSIS E264 AT 1.60 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED SNOAL-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS E264; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 GENE: BTH_II0226, YP_438428.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3H3H 1 REMARK SEQADV REVDAT 5 24-JUL-19 3H3H 1 REMARK LINK REVDAT 4 25-OCT-17 3H3H 1 REMARK REVDAT 3 13-JUL-11 3H3H 1 VERSN REVDAT 2 23-MAR-11 3H3H 1 HEADER TITLE KEYWDS REVDAT 1 05-MAY-09 3H3H 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SNOAL-LIKE PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (YP_438428.1) FROM BURKHOLDERIA THAILANDENSIS E264 AT 1.60 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 29133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.824 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2071 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1398 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2828 ; 1.656 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3365 ; 0.846 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 4.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;32.202 ;22.475 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;13.921 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;11.819 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2424 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 482 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1263 ; 1.969 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 515 ; 0.768 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2016 ; 2.954 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 808 ; 4.934 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 812 ; 6.260 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 121 2 REMARK 3 1 B 3 B 121 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 639 ; 0.360 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 779 ; 0.760 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 639 ; 1.280 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 779 ; 1.660 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4072 5.4877 11.3512 REMARK 3 T TENSOR REMARK 3 T11: 0.0300 T22: 0.0352 REMARK 3 T33: 0.0305 T12: 0.0084 REMARK 3 T13: -0.0087 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.9600 L22: 0.4971 REMARK 3 L33: 1.7130 L12: 0.1281 REMARK 3 L13: -0.1367 L23: 0.2079 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.1536 S13: 0.0635 REMARK 3 S21: -0.0689 S22: -0.0292 S23: 0.0106 REMARK 3 S31: -0.0791 S32: -0.0391 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2143 0.3208 34.0707 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: 0.0170 REMARK 3 T33: 0.0390 T12: -0.0061 REMARK 3 T13: 0.0013 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.5046 L22: 0.3056 REMARK 3 L33: 2.7874 L12: -0.1115 REMARK 3 L13: 0.2968 L23: -0.3001 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.0417 S13: 0.0299 REMARK 3 S21: 0.0298 S22: -0.0545 S23: 0.0192 REMARK 3 S31: -0.0011 S32: 0.1217 S33: 0.0692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM REMARK 3 RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION REMARK 3 PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING REMARK 3 PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE REMARK 3 RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.UNKNOWN REMARK 3 LIGANDS(UNL) ARE MODELED IN PUTATIVE ACTIVE SITES COMPRISED OF REMARK 3 RESIDUES 16, 20, 32, 42, 64, 92, 102, 104 AND 119 IN EACH REMARK 3 SUBUNIT. 5.ONE MES MOLECULE FROM CRYSTALLIZATION CONDITION IS REMARK 3 MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3H3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97889,0.97833 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29144 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.424 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.6000% POLYETHYLENE GLYCOL 6000, REMARK 280 0.1M MES PH 5.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.52450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.52450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.87300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.69950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.87300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.69950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.52450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.87300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.69950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.52450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.87300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.69950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE RESULTS FROM SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 124 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 49 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 109 CG OD1 OD2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 42 CG - SE - CE ANGL. DEV. = -19.3 DEGREES REMARK 500 ARG B 98 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 71 73.77 -117.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 123 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390584 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3H3H A 1 121 UNP Q2T8S1 Q2T8S1_BURTA 1 121 DBREF 3H3H B 1 121 UNP Q2T8S1 Q2T8S1_BURTA 1 121 SEQADV 3H3H GLY A 0 UNP Q2T8S1 EXPRESSION TAG SEQADV 3H3H GLY B 0 UNP Q2T8S1 EXPRESSION TAG SEQRES 1 A 122 GLY MSE GLU PRO ILE THR GLN ALA PHE ALA GLN GLN PHE SEQRES 2 A 122 SER ARG GLU TRP ILE ASP ALA TRP ASN ALA HIS ASP LEU SEQRES 3 A 122 ASP ALA ILE LEU SER HIS TYR ALA ASP GLY PHE GLU MSE SEQRES 4 A 122 SER SER PRO MSE ILE VAL GLN ILE ALA GLY GLU PRO SER SEQRES 5 A 122 GLY ARG LEU ARG GLY LYS GLU GLN VAL GLY ALA TYR TRP SEQRES 6 A 122 ARG GLU ALA LEU ARG MSE ILE PRO ASP LEU HIS PHE GLU SEQRES 7 A 122 TRP ILE ALA THR LEU ALA GLY VAL ASP SER VAL ALA ILE SEQRES 8 A 122 HIS TYR ARG GLY ALA LYS GLY ARG LEU ALA LEU GLU VAL SEQRES 9 A 122 PHE HIS PHE GLY PRO ASP ARG ARG VAL VAL LYS ALA LEU SEQRES 10 A 122 ALA HIS TYR ALA GLY SEQRES 1 B 122 GLY MSE GLU PRO ILE THR GLN ALA PHE ALA GLN GLN PHE SEQRES 2 B 122 SER ARG GLU TRP ILE ASP ALA TRP ASN ALA HIS ASP LEU SEQRES 3 B 122 ASP ALA ILE LEU SER HIS TYR ALA ASP GLY PHE GLU MSE SEQRES 4 B 122 SER SER PRO MSE ILE VAL GLN ILE ALA GLY GLU PRO SER SEQRES 5 B 122 GLY ARG LEU ARG GLY LYS GLU GLN VAL GLY ALA TYR TRP SEQRES 6 B 122 ARG GLU ALA LEU ARG MSE ILE PRO ASP LEU HIS PHE GLU SEQRES 7 B 122 TRP ILE ALA THR LEU ALA GLY VAL ASP SER VAL ALA ILE SEQRES 8 B 122 HIS TYR ARG GLY ALA LYS GLY ARG LEU ALA LEU GLU VAL SEQRES 9 B 122 PHE HIS PHE GLY PRO ASP ARG ARG VAL VAL LYS ALA LEU SEQRES 10 B 122 ALA HIS TYR ALA GLY MODRES 3H3H MSE A 38 MET SELENOMETHIONINE MODRES 3H3H MSE A 42 MET SELENOMETHIONINE MODRES 3H3H MSE A 70 MET SELENOMETHIONINE MODRES 3H3H MSE B 38 MET SELENOMETHIONINE MODRES 3H3H MSE B 42 MET SELENOMETHIONINE MODRES 3H3H MSE B 70 MET SELENOMETHIONINE HET MSE A 38 24 HET MSE A 42 8 HET MSE A 70 8 HET MSE B 38 8 HET MSE B 42 16 HET MSE B 70 16 HET UNL A 122 9 HET UNL B 122 14 HET MES B 123 12 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 5 MES C6 H13 N O4 S FORMUL 6 HOH *171(H2 O) HELIX 1 1 THR A 5 ALA A 22 1 18 HELIX 2 2 ASP A 24 SER A 30 1 7 HELIX 3 3 SER A 40 GLY A 48 1 9 HELIX 4 4 GLY A 56 ILE A 71 1 16 HELIX 5 5 ALA A 95 GLY A 97 5 3 HELIX 6 6 THR B 5 ALA B 22 1 18 HELIX 7 7 ASP B 24 SER B 30 1 7 HELIX 8 8 SER B 40 ILE B 46 1 7 HELIX 9 9 GLY B 56 ILE B 71 1 16 SHEET 1 A 6 ARG A 53 ARG A 55 0 SHEET 2 A 6 TYR A 32 SER A 39 -1 N MSE A 38 O LEU A 54 SHEET 3 A 6 VAL A 112 TYR A 119 1 O ALA A 117 N SER A 39 SHEET 4 A 6 LEU A 99 PHE A 106 -1 N HIS A 105 O LYS A 114 SHEET 5 A 6 SER A 87 ARG A 93 -1 N TYR A 92 O ALA A 100 SHEET 6 A 6 GLU A 77 ALA A 83 -1 N ALA A 80 O HIS A 91 SHEET 1 B 6 ARG B 53 ARG B 55 0 SHEET 2 B 6 TYR B 32 SER B 39 -1 N MSE B 38 O LEU B 54 SHEET 3 B 6 VAL B 112 ALA B 120 1 O VAL B 112 N ALA B 33 SHEET 4 B 6 LEU B 99 PHE B 106 -1 N HIS B 105 O LYS B 114 SHEET 5 B 6 SER B 87 ARG B 93 -1 N VAL B 88 O PHE B 104 SHEET 6 B 6 GLU B 77 ALA B 83 -1 N ALA B 80 O HIS B 91 LINK C GLU A 37 N AMSE A 38 1555 1555 1.33 LINK C GLU A 37 N BMSE A 38 1555 1555 1.32 LINK C GLU A 37 N CMSE A 38 1555 1555 1.33 LINK C AMSE A 38 N SER A 39 1555 1555 1.33 LINK C BMSE A 38 N SER A 39 1555 1555 1.32 LINK C CMSE A 38 N SER A 39 1555 1555 1.33 LINK C PRO A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N ILE A 43 1555 1555 1.32 LINK C ARG A 69 N MSE A 70 1555 1555 1.34 LINK C MSE A 70 N ILE A 71 1555 1555 1.32 LINK C AGLU B 37 N MSE B 38 1555 1555 1.33 LINK C BGLU B 37 N MSE B 38 1555 1555 1.33 LINK C MSE B 38 N SER B 39 1555 1555 1.33 LINK C PRO B 41 N AMSE B 42 1555 1555 1.33 LINK C PRO B 41 N BMSE B 42 1555 1555 1.32 LINK C AMSE B 42 N ILE B 43 1555 1555 1.33 LINK C BMSE B 42 N ILE B 43 1555 1555 1.33 LINK C ARG B 69 N AMSE B 70 1555 1555 1.32 LINK C ARG B 69 N BMSE B 70 1555 1555 1.33 LINK C AMSE B 70 N ILE B 71 1555 1555 1.34 LINK C BMSE B 70 N ILE B 71 1555 1555 1.32 SITE 1 AC1 9 TRP A 16 TRP A 20 MSE A 38 TRP A 64 SITE 2 AC1 9 ALA A 67 GLU A 102 HOH A 166 HOH A 179 SITE 3 AC1 9 HOH A 183 SITE 1 AC2 12 TRP B 20 MSE B 38 SER B 40 MSE B 42 SITE 2 AC2 12 ILE B 46 TRP B 64 PHE B 76 TYR B 92 SITE 3 AC2 12 GLU B 102 ALA B 117 TYR B 119 HOH B 213 SITE 1 AC3 8 ARG A 93 HOH A 128 GLN B 10 ARG B 14 SITE 2 AC3 8 TRP B 78 ILE B 79 ALA B 80 THR B 81 CRYST1 61.746 73.399 97.049 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016195 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010304 0.00000