HEADER OXIDOREDUCTASE 16-APR-09 3H3J TITLE CRYSTAL STRUCTURE OF LACTATE DEHYDROGENASE MUTANT (A85R) FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPLEXED WITH NAD AND PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-LDH 1; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 GENE: LDH1, SACOL0222; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PDEST14 KEYWDS ROSSMANN FOLD, ALPHA-BETA MOTIF, CYTOPLASM, GLYCOLYSIS, NAD, KEYWDS 2 OXIDOREDUCTASE, PHOSPHOPROTEIN, STRESS RESPONSE EXPDTA X-RAY DIFFRACTION AUTHOR M.-C.HO,S.C.ALMO,V.L.SCHRAMM REVDAT 5 15-NOV-23 3H3J 1 ATOM REVDAT 4 06-SEP-23 3H3J 1 REMARK REVDAT 3 13-OCT-21 3H3J 1 REMARK SEQADV REVDAT 2 01-NOV-17 3H3J 1 REMARK REVDAT 1 28-APR-10 3H3J 0 JRNL AUTH M.-C.HO,S.C.ALMO,V.L.SCHRAMM JRNL TITL CRYSTAL STRUCTURE OF LACTATE DEHYDROGENASE MUTANT (A85R) JRNL TITL 2 FROM STAPHYLOCOCCUS AUREUS COMPLEXED WITH NAD AND PYRUVATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 57336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3602 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.84000 REMARK 3 B22 (A**2) : 2.64000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5038 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6844 ; 1.248 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 5.223 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;39.535 ;24.771 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 859 ;14.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 799 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3746 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3118 ; 0.626 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5033 ; 1.148 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1920 ; 1.977 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1808 ; 3.309 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 3H3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08100 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60471 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6930 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3D4P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000MME, 0.1M TRIS BUFFER, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.95850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.95850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 61.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -51.10473 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.68334 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 350 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 351 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 317 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LYS B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 195 O1 GOL B 502 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 114 12.89 84.86 REMARK 500 ASP A 116 44.69 -144.66 REMARK 500 TYR A 233 -33.18 -154.27 REMARK 500 TYR A 265 19.31 57.94 REMARK 500 ASP B 94 1.42 -63.72 REMARK 500 LYS B 114 17.42 84.97 REMARK 500 ASP B 116 49.39 -148.17 REMARK 500 TYR B 233 -29.93 -153.91 REMARK 500 TYR B 265 19.61 56.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D0O RELATED DB: PDB REMARK 900 RELATED ID: 3D4P RELATED DB: PDB DBREF 3H3J A 1 317 UNP Q5HJD7 LDH1_STAAC 1 317 DBREF 3H3J B 1 317 UNP Q5HJD7 LDH1_STAAC 1 317 SEQADV 3H3J ARG A 85 UNP Q5HJD7 ALA 85 ENGINEERED MUTATION SEQADV 3H3J ARG B 85 UNP Q5HJD7 ALA 85 ENGINEERED MUTATION SEQRES 1 A 317 MET ASN LYS PHE LYS GLY ASN LYS VAL VAL LEU ILE GLY SEQRES 2 A 317 ASN GLY ALA VAL GLY SER SER TYR ALA PHE SER LEU VAL SEQRES 3 A 317 ASN GLN SER ILE VAL ASP GLU LEU VAL ILE ILE ASP LEU SEQRES 4 A 317 ASP THR GLU LYS VAL ARG GLY ASP VAL MET ASP LEU LYS SEQRES 5 A 317 HIS ALA THR PRO TYR SER PRO THR THR VAL ARG VAL LYS SEQRES 6 A 317 ALA GLY GLU TYR SER ASP CYS HIS ASP ALA ASP LEU VAL SEQRES 7 A 317 VAL ILE CYS ALA GLY ALA ARG GLN LYS PRO GLY GLU THR SEQRES 8 A 317 ARG LEU ASP LEU VAL SER LYS ASN LEU LYS ILE PHE LYS SEQRES 9 A 317 SER ILE VAL GLY GLU VAL MET ALA SER LYS PHE ASP GLY SEQRES 10 A 317 ILE PHE LEU VAL ALA THR ASN PRO VAL ASP ILE LEU ALA SEQRES 11 A 317 TYR ALA THR TRP LYS PHE SER GLY LEU PRO LYS GLU ARG SEQRES 12 A 317 VAL ILE GLY SER GLY THR ILE LEU ASP SER ALA ARG PHE SEQRES 13 A 317 ARG LEU LEU LEU SER GLU ALA PHE ASP VAL ALA PRO ARG SEQRES 14 A 317 SER VAL ASP ALA GLN ILE ILE GLY GLU HIS GLY ASP THR SEQRES 15 A 317 GLU LEU PRO VAL TRP SER HIS ALA ASN ILE ALA GLY GLN SEQRES 16 A 317 PRO LEU LYS THR LEU LEU GLU GLN ARG PRO GLU GLY LYS SEQRES 17 A 317 ALA GLN ILE GLU GLN ILE PHE VAL GLN THR ARG ASP ALA SEQRES 18 A 317 ALA TYR ASP ILE ILE GLN ALA LYS GLY ALA THR TYR TYR SEQRES 19 A 317 GLY VAL ALA MET GLY LEU ALA ARG ILE THR GLU ALA ILE SEQRES 20 A 317 PHE ARG ASN GLU ASP ALA VAL LEU THR VAL SER ALA LEU SEQRES 21 A 317 LEU GLU GLY GLU TYR GLU GLU GLU ASP VAL TYR ILE GLY SEQRES 22 A 317 VAL PRO ALA VAL ILE ASN ARG ASN GLY ILE ARG ASN VAL SEQRES 23 A 317 VAL GLU ILE PRO LEU ASN ASP GLU GLU GLN SER LYS PHE SEQRES 24 A 317 ALA HIS SER ALA LYS THR LEU LYS ASP ILE MET ALA GLU SEQRES 25 A 317 ALA GLU GLU LEU LYS SEQRES 1 B 317 MET ASN LYS PHE LYS GLY ASN LYS VAL VAL LEU ILE GLY SEQRES 2 B 317 ASN GLY ALA VAL GLY SER SER TYR ALA PHE SER LEU VAL SEQRES 3 B 317 ASN GLN SER ILE VAL ASP GLU LEU VAL ILE ILE ASP LEU SEQRES 4 B 317 ASP THR GLU LYS VAL ARG GLY ASP VAL MET ASP LEU LYS SEQRES 5 B 317 HIS ALA THR PRO TYR SER PRO THR THR VAL ARG VAL LYS SEQRES 6 B 317 ALA GLY GLU TYR SER ASP CYS HIS ASP ALA ASP LEU VAL SEQRES 7 B 317 VAL ILE CYS ALA GLY ALA ARG GLN LYS PRO GLY GLU THR SEQRES 8 B 317 ARG LEU ASP LEU VAL SER LYS ASN LEU LYS ILE PHE LYS SEQRES 9 B 317 SER ILE VAL GLY GLU VAL MET ALA SER LYS PHE ASP GLY SEQRES 10 B 317 ILE PHE LEU VAL ALA THR ASN PRO VAL ASP ILE LEU ALA SEQRES 11 B 317 TYR ALA THR TRP LYS PHE SER GLY LEU PRO LYS GLU ARG SEQRES 12 B 317 VAL ILE GLY SER GLY THR ILE LEU ASP SER ALA ARG PHE SEQRES 13 B 317 ARG LEU LEU LEU SER GLU ALA PHE ASP VAL ALA PRO ARG SEQRES 14 B 317 SER VAL ASP ALA GLN ILE ILE GLY GLU HIS GLY ASP THR SEQRES 15 B 317 GLU LEU PRO VAL TRP SER HIS ALA ASN ILE ALA GLY GLN SEQRES 16 B 317 PRO LEU LYS THR LEU LEU GLU GLN ARG PRO GLU GLY LYS SEQRES 17 B 317 ALA GLN ILE GLU GLN ILE PHE VAL GLN THR ARG ASP ALA SEQRES 18 B 317 ALA TYR ASP ILE ILE GLN ALA LYS GLY ALA THR TYR TYR SEQRES 19 B 317 GLY VAL ALA MET GLY LEU ALA ARG ILE THR GLU ALA ILE SEQRES 20 B 317 PHE ARG ASN GLU ASP ALA VAL LEU THR VAL SER ALA LEU SEQRES 21 B 317 LEU GLU GLY GLU TYR GLU GLU GLU ASP VAL TYR ILE GLY SEQRES 22 B 317 VAL PRO ALA VAL ILE ASN ARG ASN GLY ILE ARG ASN VAL SEQRES 23 B 317 VAL GLU ILE PRO LEU ASN ASP GLU GLU GLN SER LYS PHE SEQRES 24 B 317 ALA HIS SER ALA LYS THR LEU LYS ASP ILE MET ALA GLU SEQRES 25 B 317 ALA GLU GLU LEU LYS HET NAD A 500 44 HET PYR A 501 6 HET GOL A 502 6 HET NAD B 500 44 HET PYR B 501 6 HET GOL B 502 6 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PYR PYRUVIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 PYR 2(C3 H4 O3) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *286(H2 O) HELIX 1 1 GLY A 15 SER A 29 1 15 HELIX 2 2 ASP A 40 THR A 55 1 16 HELIX 3 3 PRO A 56 SER A 58 5 3 HELIX 4 4 GLU A 68 HIS A 73 5 6 HELIX 5 5 ARG A 92 ASP A 94 5 3 HELIX 6 6 LEU A 95 SER A 113 1 19 HELIX 7 7 PRO A 125 GLY A 138 1 14 HELIX 8 8 PRO A 140 GLU A 142 5 3 HELIX 9 9 THR A 149 ASP A 165 1 17 HELIX 10 10 ALA A 167 VAL A 171 5 5 HELIX 11 11 LEU A 197 GLN A 203 1 7 HELIX 12 12 GLU A 206 ASP A 220 1 15 HELIX 13 13 ASP A 220 GLY A 230 1 11 HELIX 14 14 TYR A 233 ARG A 249 1 17 HELIX 15 15 GLU A 264 GLU A 266 5 3 HELIX 16 16 ASN A 292 ALA A 313 1 22 HELIX 17 17 GLY B 15 SER B 29 1 15 HELIX 18 18 ASP B 40 HIS B 53 1 14 HELIX 19 19 ALA B 54 SER B 58 5 5 HELIX 20 20 GLU B 68 ALA B 75 5 8 HELIX 21 21 THR B 91 ASP B 94 5 4 HELIX 22 22 LEU B 95 SER B 113 1 19 HELIX 23 23 PRO B 125 GLY B 138 1 14 HELIX 24 24 PRO B 140 GLU B 142 5 3 HELIX 25 25 THR B 149 ASP B 165 1 17 HELIX 26 26 ALA B 167 VAL B 171 5 5 HELIX 27 27 LEU B 197 GLN B 203 1 7 HELIX 28 28 GLU B 206 ASP B 220 1 15 HELIX 29 29 ASP B 220 GLY B 230 1 11 HELIX 30 30 TYR B 233 ARG B 249 1 17 HELIX 31 31 GLU B 264 GLU B 266 5 3 HELIX 32 32 ASN B 292 GLU B 312 1 21 HELIX 33 33 ALA B 313 LYS B 317 5 5 SHEET 1 A 6 ARG A 63 ALA A 66 0 SHEET 2 A 6 GLU A 33 ILE A 37 1 N LEU A 34 O ARG A 63 SHEET 3 A 6 LYS A 8 ILE A 12 1 N LEU A 11 O VAL A 35 SHEET 4 A 6 LEU A 77 ILE A 80 1 O VAL A 79 N ILE A 12 SHEET 5 A 6 ILE A 118 VAL A 121 1 O LEU A 120 N VAL A 78 SHEET 6 A 6 VAL A 144 GLY A 146 1 O ILE A 145 N VAL A 121 SHEET 1 B 2 ILE A 175 ILE A 176 0 SHEET 2 B 2 LEU A 184 PRO A 185 -1 O LEU A 184 N ILE A 176 SHEET 1 C 2 ASN A 191 ILE A 192 0 SHEET 2 C 2 GLN A 195 PRO A 196 -1 O GLN A 195 N ILE A 192 SHEET 1 D 3 ALA A 253 GLU A 262 0 SHEET 2 D 3 GLU A 268 ASN A 279 -1 O ILE A 278 N ALA A 253 SHEET 3 D 3 GLY A 282 VAL A 286 -1 O ARG A 284 N VAL A 277 SHEET 1 E 6 ARG B 63 ALA B 66 0 SHEET 2 E 6 GLU B 33 ILE B 37 1 N LEU B 34 O ARG B 63 SHEET 3 E 6 LYS B 8 ILE B 12 1 N LEU B 11 O ILE B 37 SHEET 4 E 6 LEU B 77 ILE B 80 1 O VAL B 79 N ILE B 12 SHEET 5 E 6 ILE B 118 VAL B 121 1 O LEU B 120 N VAL B 78 SHEET 6 E 6 VAL B 144 GLY B 146 1 O ILE B 145 N VAL B 121 SHEET 1 F 2 ILE B 175 ILE B 176 0 SHEET 2 F 2 LEU B 184 PRO B 185 -1 O LEU B 184 N ILE B 176 SHEET 1 G 2 ASN B 191 ILE B 192 0 SHEET 2 G 2 GLN B 195 PRO B 196 -1 O GLN B 195 N ILE B 192 SHEET 1 H 3 ALA B 253 GLU B 262 0 SHEET 2 H 3 GLU B 268 ASN B 279 -1 O ILE B 278 N ALA B 253 SHEET 3 H 3 GLY B 282 VAL B 286 -1 O ARG B 284 N VAL B 277 CISPEP 1 ASN A 124 PRO A 125 0 0.57 CISPEP 2 ASN B 124 PRO B 125 0 -3.13 SITE 1 AC1 28 GLY A 15 ALA A 16 VAL A 17 ASP A 38 SITE 2 AC1 28 LEU A 39 CYS A 81 ALA A 82 GLY A 83 SITE 3 AC1 28 ALA A 84 ARG A 85 ALA A 122 THR A 123 SITE 4 AC1 28 ASN A 124 SER A 147 LEU A 151 HIS A 179 SITE 5 AC1 28 THR A 232 VAL A 236 HOH A 327 HOH A 349 SITE 6 AC1 28 HOH A 394 HOH A 399 HOH A 416 HOH A 434 SITE 7 AC1 28 HOH A 447 HOH A 453 HOH A 464 PYR A 501 SITE 1 AC2 9 GLN A 86 ARG A 92 ASN A 124 LEU A 151 SITE 2 AC2 9 ARG A 155 HIS A 179 ALA A 222 THR A 232 SITE 3 AC2 9 NAD A 500 SITE 1 AC3 5 SER A 188 HIS A 189 HOH A 344 HIS B 189 SITE 2 AC3 5 HOH B 349 SITE 1 AC4 28 GLY B 15 ALA B 16 VAL B 17 ASP B 38 SITE 2 AC4 28 LEU B 39 CYS B 81 ALA B 82 GLY B 83 SITE 3 AC4 28 ALA B 84 ARG B 85 ILE B 102 ALA B 122 SITE 4 AC4 28 THR B 123 ASN B 124 SER B 147 LEU B 151 SITE 5 AC4 28 HIS B 179 THR B 232 VAL B 236 HOH B 327 SITE 6 AC4 28 HOH B 348 HOH B 371 HOH B 406 HOH B 421 SITE 7 AC4 28 HOH B 423 HOH B 424 HOH B 437 PYR B 501 SITE 1 AC5 9 GLN B 86 ARG B 92 ASN B 124 LEU B 151 SITE 2 AC5 9 ARG B 155 HIS B 179 ALA B 222 THR B 232 SITE 3 AC5 9 NAD B 500 SITE 1 AC6 5 ARG A 284 ASN A 285 PHE B 164 VAL B 166 SITE 2 AC6 5 GLN B 195 CRYST1 83.917 122.120 74.319 90.00 116.20 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011917 0.000000 0.005864 0.00000 SCALE2 0.000000 0.008189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014997 0.00000