HEADER LIPID TRANSPORT 17-APR-09 3H3Q TITLE CRYSTAL STRUCTURE OF THE CERT START DOMAIN IN COMPLEX WITH HPA-13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GOODPASTURE ANTIGEN BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CERT START DOMAIN (RESIDUES 347-598); COMPND 5 SYNONYM: CDNA FLJ77923, HIGHLY SIMILAR TO HOMO SAPIENS COLLAGEN, TYPE COMPND 6 IV, ALPHA 3 (GOODPASTURE ANTIGEN) BINDING PROTEIN, COL4A3BP, COMPND 7 TRANSCRIPT VARIANT 2, MRNA, COLLAGEN, TYPE IV, ALPHA 3 (GOODPASTURE COMPND 8 ANTIGEN) BINDING PROTEIN, ISOFORM CRA_A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CERT, COL4A3BP, HCG_18817; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-5X1 (MODIFIED) KEYWDS LIPID TRANSFER PROTEIN, CERT, CERAMIDE TRANSFER, COLLAGEN, LIPID KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.KUDO,S.WAKATSUKI,R.KATO REVDAT 3 01-NOV-23 3H3Q 1 REMARK SEQADV REVDAT 2 01-NOV-17 3H3Q 1 REMARK REVDAT 1 02-MAR-10 3H3Q 0 JRNL AUTH N.KUDO,K.KUMAGAI,R.MATSUBARA,S.KOBAYASHI,K.HANADA, JRNL AUTH 2 S.WAKATSUKI,R.KATO JRNL TITL CRYSTAL STRUCTURES OF THE CERT START DOMAIN WITH INHIBITORS JRNL TITL 2 PROVIDE INSIGHTS INTO THE MECHANISM OF CERAMIDE TRANSFER. JRNL REF J.MOL.BIOL. V. 396 245 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20036255 JRNL DOI 10.1016/J.JMB.2009.12.029 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 30090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1507 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1580 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3924 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5335 ; 1.576 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 6.879 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;35.048 ;24.346 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;14.850 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;23.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2986 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2352 ; 0.899 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3845 ; 1.669 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1572 ; 2.504 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1490 ; 4.067 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, RESOLVE REMARK 200 STARTING MODEL: 2E3N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.35300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 344 REMARK 465 ASN A 345 REMARK 465 SER A 346 REMARK 465 LEU A 347 REMARK 465 HIS A 348 REMARK 465 TRP A 349 REMARK 465 PRO A 350 REMARK 465 THR A 351 REMARK 465 SER A 352 REMARK 465 LEU A 353 REMARK 465 PRO A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 ASP A 357 REMARK 465 ALA A 358 REMARK 465 PHE A 359 REMARK 465 SER A 360 REMARK 465 SER A 361 REMARK 465 VAL A 362 REMARK 465 SER B 344 REMARK 465 ASN B 345 REMARK 465 SER B 346 REMARK 465 LEU B 347 REMARK 465 HIS B 348 REMARK 465 TRP B 349 REMARK 465 PRO B 350 REMARK 465 THR B 351 REMARK 465 SER B 352 REMARK 465 LEU B 353 REMARK 465 PRO B 354 REMARK 465 SER B 355 REMARK 465 GLY B 356 REMARK 465 ASP B 357 REMARK 465 ALA B 358 REMARK 465 PHE B 359 REMARK 465 SER B 360 REMARK 465 SER B 361 REMARK 465 VAL B 362 REMARK 465 GLY B 363 REMARK 465 THR B 364 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 537 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 405 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 471 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 384 140.60 -36.27 REMARK 500 GLU A 398 108.47 -170.61 REMARK 500 ASP A 416 101.96 -19.82 REMARK 500 TRP A 445 -33.83 -131.50 REMARK 500 ASP B 416 103.90 -18.00 REMARK 500 PRO B 536 -149.00 -92.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H13 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H13 B 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E3M RELATED DB: PDB REMARK 900 THE SAME PROTEIN, IN THE APO-FORM REMARK 900 RELATED ID: 2E3N RELATED DB: PDB REMARK 900 THE SAME PROTEIN, COMPLEXED WITH C6-CERAMIDE REMARK 900 RELATED ID: 2E3O RELATED DB: PDB REMARK 900 THE SAME PROTEIN, COMPLEXED WITH C16-CERAMIDE REMARK 900 RELATED ID: 2E3P RELATED DB: PDB REMARK 900 THE SAME PROTEIN, COMPLEXED WITH C16-CERAMIDE REMARK 900 RELATED ID: 2E3Q RELATED DB: PDB REMARK 900 THE SAME PROTEIN, COMPLEXED WITH C18-CERAMIDE REMARK 900 RELATED ID: 2E3R RELATED DB: PDB REMARK 900 THE SAME PROTEIN, COMPLEXED WITH C18-CERAMIDE REMARK 900 RELATED ID: 2E3S RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CO-CRYSTALLIZED WITH C24-CERAMIDE REMARK 900 RELATED ID: 3H3R RELATED DB: PDB REMARK 900 RELATED ID: 3H3S RELATED DB: PDB REMARK 900 RELATED ID: 3H3T RELATED DB: PDB DBREF 3H3Q A 347 598 UNP A8K7S2 A8K7S2_HUMAN 347 598 DBREF 3H3Q B 347 598 UNP A8K7S2 A8K7S2_HUMAN 347 598 SEQADV 3H3Q SER A 344 UNP A8K7S2 EXPRESSION TAG SEQADV 3H3Q ASN A 345 UNP A8K7S2 EXPRESSION TAG SEQADV 3H3Q SER A 346 UNP A8K7S2 EXPRESSION TAG SEQADV 3H3Q SER B 344 UNP A8K7S2 EXPRESSION TAG SEQADV 3H3Q ASN B 345 UNP A8K7S2 EXPRESSION TAG SEQADV 3H3Q SER B 346 UNP A8K7S2 EXPRESSION TAG SEQRES 1 A 255 SER ASN SER LEU HIS TRP PRO THR SER LEU PRO SER GLY SEQRES 2 A 255 ASP ALA PHE SER SER VAL GLY THR HIS ARG PHE VAL GLN SEQRES 3 A 255 LYS VAL GLU GLU MET VAL GLN ASN HIS MET THR TYR SER SEQRES 4 A 255 LEU GLN ASP VAL GLY GLY ASP ALA ASN TRP GLN LEU VAL SEQRES 5 A 255 VAL GLU GLU GLY GLU MET LYS VAL TYR ARG ARG GLU VAL SEQRES 6 A 255 GLU GLU ASN GLY ILE VAL LEU ASP PRO LEU LYS ALA THR SEQRES 7 A 255 HIS ALA VAL LYS GLY VAL THR GLY HIS GLU VAL CYS ASN SEQRES 8 A 255 TYR PHE TRP ASN VAL ASP VAL ARG ASN ASP TRP GLU THR SEQRES 9 A 255 THR ILE GLU ASN PHE HIS VAL VAL GLU THR LEU ALA ASP SEQRES 10 A 255 ASN ALA ILE ILE ILE TYR GLN THR HIS LYS ARG VAL TRP SEQRES 11 A 255 PRO ALA SER GLN ARG ASP VAL LEU TYR LEU SER VAL ILE SEQRES 12 A 255 ARG LYS ILE PRO ALA LEU THR GLU ASN ASP PRO GLU THR SEQRES 13 A 255 TRP ILE VAL CYS ASN PHE SER VAL ASP HIS ASP SER ALA SEQRES 14 A 255 PRO LEU ASN ASN ARG CYS VAL ARG ALA LYS ILE ASN VAL SEQRES 15 A 255 ALA MET ILE CYS GLN THR LEU VAL SER PRO PRO GLU GLY SEQRES 16 A 255 ASN GLN GLU ILE SER ARG ASP ASN ILE LEU CYS LYS ILE SEQRES 17 A 255 THR TYR VAL ALA ASN VAL ASN PRO GLY GLY TRP ALA PRO SEQRES 18 A 255 ALA SER VAL LEU ARG ALA VAL ALA LYS ARG GLU TYR PRO SEQRES 19 A 255 LYS PHE LEU LYS ARG PHE THR SER TYR VAL GLN GLU LYS SEQRES 20 A 255 THR ALA GLY LYS PRO ILE LEU PHE SEQRES 1 B 255 SER ASN SER LEU HIS TRP PRO THR SER LEU PRO SER GLY SEQRES 2 B 255 ASP ALA PHE SER SER VAL GLY THR HIS ARG PHE VAL GLN SEQRES 3 B 255 LYS VAL GLU GLU MET VAL GLN ASN HIS MET THR TYR SER SEQRES 4 B 255 LEU GLN ASP VAL GLY GLY ASP ALA ASN TRP GLN LEU VAL SEQRES 5 B 255 VAL GLU GLU GLY GLU MET LYS VAL TYR ARG ARG GLU VAL SEQRES 6 B 255 GLU GLU ASN GLY ILE VAL LEU ASP PRO LEU LYS ALA THR SEQRES 7 B 255 HIS ALA VAL LYS GLY VAL THR GLY HIS GLU VAL CYS ASN SEQRES 8 B 255 TYR PHE TRP ASN VAL ASP VAL ARG ASN ASP TRP GLU THR SEQRES 9 B 255 THR ILE GLU ASN PHE HIS VAL VAL GLU THR LEU ALA ASP SEQRES 10 B 255 ASN ALA ILE ILE ILE TYR GLN THR HIS LYS ARG VAL TRP SEQRES 11 B 255 PRO ALA SER GLN ARG ASP VAL LEU TYR LEU SER VAL ILE SEQRES 12 B 255 ARG LYS ILE PRO ALA LEU THR GLU ASN ASP PRO GLU THR SEQRES 13 B 255 TRP ILE VAL CYS ASN PHE SER VAL ASP HIS ASP SER ALA SEQRES 14 B 255 PRO LEU ASN ASN ARG CYS VAL ARG ALA LYS ILE ASN VAL SEQRES 15 B 255 ALA MET ILE CYS GLN THR LEU VAL SER PRO PRO GLU GLY SEQRES 16 B 255 ASN GLN GLU ILE SER ARG ASP ASN ILE LEU CYS LYS ILE SEQRES 17 B 255 THR TYR VAL ALA ASN VAL ASN PRO GLY GLY TRP ALA PRO SEQRES 18 B 255 ALA SER VAL LEU ARG ALA VAL ALA LYS ARG GLU TYR PRO SEQRES 19 B 255 LYS PHE LEU LYS ARG PHE THR SER TYR VAL GLN GLU LYS SEQRES 20 B 255 THR ALA GLY LYS PRO ILE LEU PHE HET H13 A 600 27 HET H13 B 600 27 HETNAM H13 N-[(1R,3R)-3-HYDROXY-1-(HYDROXYMETHYL)-3- HETNAM 2 H13 PHENYLPROPYL]TRIDECANAMIDE FORMUL 3 H13 2(C23 H39 N O3) FORMUL 5 HOH *65(H2 O) HELIX 1 1 PHE A 367 SER A 382 1 16 HELIX 2 2 THR A 428 ASN A 438 1 11 HELIX 3 3 VAL A 439 TRP A 445 5 7 HELIX 4 4 SER A 543 ASP A 545 5 3 HELIX 5 5 PRO A 564 ALA A 592 1 29 HELIX 6 6 PHE B 367 SER B 382 1 16 HELIX 7 7 THR B 428 ASN B 438 1 11 HELIX 8 8 VAL B 441 GLU B 446 1 6 HELIX 9 9 PRO B 564 ALA B 592 1 29 SHEET 1 A 9 TRP A 392 GLU A 398 0 SHEET 2 A 9 MET A 401 ARG A 406 -1 O VAL A 403 N VAL A 395 SHEET 3 A 9 LEU A 418 LYS A 425 -1 O LYS A 419 N TYR A 404 SHEET 4 A 9 ILE A 547 ASN A 558 -1 O TYR A 553 N ALA A 420 SHEET 5 A 9 LYS A 522 VAL A 533 -1 N ILE A 528 O THR A 552 SHEET 6 A 9 THR A 499 SER A 506 -1 N TRP A 500 O CYS A 529 SHEET 7 A 9 ARG A 478 ILE A 489 -1 N ILE A 489 O THR A 499 SHEET 8 A 9 ALA A 462 HIS A 469 -1 N ILE A 465 O TYR A 482 SHEET 9 A 9 ILE A 449 ALA A 459 -1 N GLU A 450 O THR A 468 SHEET 1 B 8 TRP A 392 GLU A 398 0 SHEET 2 B 8 MET A 401 ARG A 406 -1 O VAL A 403 N VAL A 395 SHEET 3 B 8 LEU A 418 LYS A 425 -1 O LYS A 419 N TYR A 404 SHEET 4 B 8 ILE A 547 ASN A 558 -1 O TYR A 553 N ALA A 420 SHEET 5 B 8 LYS A 522 VAL A 533 -1 N ILE A 528 O THR A 552 SHEET 6 B 8 THR A 499 SER A 506 -1 N TRP A 500 O CYS A 529 SHEET 7 B 8 ARG A 478 ILE A 489 -1 N ILE A 489 O THR A 499 SHEET 8 B 8 VAL A 519 ARG A 520 1 O VAL A 519 N ASP A 479 SHEET 1 C 2 GLU A 409 GLU A 410 0 SHEET 2 C 2 ILE A 413 VAL A 414 -1 O ILE A 413 N GLU A 410 SHEET 1 D 9 GLN B 393 GLU B 398 0 SHEET 2 D 9 MET B 401 ARG B 405 -1 O VAL B 403 N VAL B 396 SHEET 3 D 9 LEU B 418 LYS B 425 -1 O LYS B 419 N TYR B 404 SHEET 4 D 9 ILE B 547 ASN B 558 -1 O TYR B 553 N ALA B 420 SHEET 5 D 9 LYS B 522 VAL B 533 -1 N LEU B 532 O LEU B 548 SHEET 6 D 9 THR B 499 SER B 506 -1 N TRP B 500 O CYS B 529 SHEET 7 D 9 ARG B 478 ILE B 489 -1 N ILE B 489 O THR B 499 SHEET 8 D 9 ALA B 462 HIS B 469 -1 N ILE B 463 O SER B 484 SHEET 9 D 9 ILE B 449 ALA B 459 -1 N GLU B 456 O ILE B 464 SHEET 1 E 8 GLN B 393 GLU B 398 0 SHEET 2 E 8 MET B 401 ARG B 405 -1 O VAL B 403 N VAL B 396 SHEET 3 E 8 LEU B 418 LYS B 425 -1 O LYS B 419 N TYR B 404 SHEET 4 E 8 ILE B 547 ASN B 558 -1 O TYR B 553 N ALA B 420 SHEET 5 E 8 LYS B 522 VAL B 533 -1 N LEU B 532 O LEU B 548 SHEET 6 E 8 THR B 499 SER B 506 -1 N TRP B 500 O CYS B 529 SHEET 7 E 8 ARG B 478 ILE B 489 -1 N ILE B 489 O THR B 499 SHEET 8 E 8 VAL B 519 ARG B 520 1 O VAL B 519 N ASP B 479 SHEET 1 F 2 GLU B 409 GLU B 410 0 SHEET 2 F 2 ILE B 413 VAL B 414 -1 O ILE B 413 N GLU B 410 SITE 1 AC1 14 PHE A 436 ARG A 442 GLU A 446 ILE A 449 SITE 2 AC1 14 GLN A 467 HIS A 469 VAL A 472 VAL A 480 SITE 3 AC1 14 TYR A 482 ASN A 504 ALA A 521 VAL A 525 SITE 4 AC1 14 TYR A 553 TYR A 576 SITE 1 AC2 10 PHE B 436 ARG B 442 GLU B 446 GLN B 467 SITE 2 AC2 10 HIS B 469 TYR B 482 ASN B 504 ALA B 521 SITE 3 AC2 10 VAL B 525 TYR B 553 CRYST1 42.480 74.706 77.605 90.00 102.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023540 0.000000 0.005278 0.00000 SCALE2 0.000000 0.013386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013206 0.00000