HEADER HYDROLASE 17-APR-09 3H41 TITLE CRYSTAL STRUCTURE OF A NLPC/P60 FAMILY PROTEIN (BCE_2878) FROM TITLE 2 BACILLUS CEREUS ATCC 10987 AT 1.79 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NLP/P60 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS ATCC 10987; SOURCE 3 ORGANISM_TAXID: 222523; SOURCE 4 ATCC: 10987; SOURCE 5 GENE: BCE_2878, NP_979181.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NLPC/P60 FAMILY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3H41 1 REMARK SEQADV REVDAT 6 24-JUL-19 3H41 1 REMARK LINK REVDAT 5 01-NOV-17 3H41 1 REMARK REVDAT 4 23-MAR-11 3H41 1 JRNL REVDAT 3 12-JAN-11 3H41 1 JRNL REVDAT 2 28-JUL-10 3H41 1 TITLE KEYWDS REVDAT 1 05-MAY-09 3H41 0 JRNL AUTH Q.XU,P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD,C.BAKOLITSA,X.CAI, JRNL AUTH 2 D.CARLTON,C.CHEN,H.J.CHIU,M.CHIU,T.CLAYTON,D.DAS,M.C.DELLER, JRNL AUTH 3 L.DUAN,K.ELLROTT,C.L.FARR,J.FEUERHELM,J.C.GRANT,A.GRZECHNIK, JRNL AUTH 4 G.W.HAN,L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL, JRNL AUTH 5 S.S.KRISHNA,A.KUMAR,W.W.LAM,D.MARCIANO,M.D.MILLER,A.T.MORSE, JRNL AUTH 6 E.NIGOGHOSSIAN,A.NOPAKUN,L.OKACH,C.PUCKETT,R.REYES,H.J.TIEN, JRNL AUTH 7 C.B.TRAME,H.VAN DEN BEDEM,D.WEEKES,T.WOOTEN,A.YEH, JRNL AUTH 8 K.O.HODGSON,J.WOOLEY,M.A.ELSLIGER,A.M.DEACON,A.GODZIK, JRNL AUTH 9 S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURE OF THE GAMMA-D-GLUTAMYL-L-DIAMINO ACID JRNL TITL 2 ENDOPEPTIDASE YKFC FROM BACILLUS CEREUS IN COMPLEX WITH JRNL TITL 3 L-ALA-[GAMMA]-D-GLU: INSIGHTS INTO SUBSTRATE RECOGNITION BY JRNL TITL 4 NLPC/P60 CYSTEINE PEPTIDASES JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1354 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944232 JRNL DOI 10.1107/S1744309110021214 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 31083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2083 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.305 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2615 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1800 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3558 ; 1.499 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4421 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;31.371 ;24.336 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;12.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.671 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2856 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 500 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1567 ; 1.823 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 624 ; 0.571 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2557 ; 2.866 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 4.588 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 990 ; 6.708 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. RAMACHANDRAN OUTLIER PRO305 IS SUPPORTED BY REMARK 3 DENSITY. 4. CYS238 IS OXIDIZED AS CYSTEINE SULFONIC ACID (OCS). REMARK 3 5. THE ALA-D-GAMMA-GLU MODELED IN THE ACTIVE SITE IS BASED ON REMARK 3 DENSITY AND FUNCTION OF THE PROTEIN. PHOSPHATE AND PEG REMARK 3 FRAGEMENTS ARE PRESENTS IN CRYSTALLIZATION CONDITIONS. REMARK 4 REMARK 4 3H41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97860,0.91837,0.97985 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 41.523 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NACL, 50.0000% PEG-200, 0.1M REMARK 280 PHOSPHATE CITRATE PH 4.2, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.60250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.68650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.60250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.68650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 LYS A 26 REMARK 465 LYS A 27 REMARK 465 ASP A 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 201 CD NE CZ NH1 NH2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 OCS A 238 ND1 HIS A 291 2.10 REMARK 500 O HOH A 562 O HOH A 746 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 157 O1 PO4 A 1 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 88 127.58 -36.32 REMARK 500 TYR A 166 134.47 -34.08 REMARK 500 ASN A 167 2.19 83.98 REMARK 500 ASP A 176 -163.97 -119.92 REMARK 500 THR A 231 37.86 -140.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 3 REMARK 610 PG4 A 4 REMARK 610 PG4 A 5 REMARK 610 PG4 A 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396160 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 24-333 OF THE FULL LENGTH PROTEIN. DBREF 3H41 A 24 333 UNP Q736M3 Q736M3_BACC1 24 333 SEQADV 3H41 GLY A 0 UNP Q736M3 EXPRESSION TAG SEQRES 1 A 311 GLY GLU GLU LYS LYS ASP SER LYS ALA PHE ILE ASP VAL SEQRES 2 A 311 SER ALA ALA THR LEU TRP THR ALA PRO ASP SER LEU ARG SEQRES 3 A 311 PRO ILE ASP VAL PRO SER ALA THR ASN PRO VAL ASP LEU SEQRES 4 A 311 TRP LYS TRP THR LYS SER MSE THR LEU ASP GLU LYS LEU SEQRES 5 A 311 TRP LEU THR ASN ALA ASN LYS LEU GLU THR GLN ALA LEU SEQRES 6 A 311 LEU GLY GLN GLU VAL THR VAL VAL ASP LYS LYS GLY ASP SEQRES 7 A 311 TRP VAL LYS VAL LEU VAL HIS GLY GLN PRO THR PRO ARG SEQRES 8 A 311 ASN GLU GLU GLY TYR PRO GLY TRP MSE PRO GLU LYS GLN SEQRES 9 A 311 LEU THR TYR ASN GLN GLU PHE ALA ASP LYS THR ASN GLU SEQRES 10 A 311 PRO PHE VAL LEU VAL THR LYS PRO THR ALA ILE LEU TYR SEQRES 11 A 311 ILE ASN PRO SER GLU LYS HIS LYS SER LEU GLU VAL SER SEQRES 12 A 311 TYR ASN THR ARG LEU PRO LEU LEU SER GLU ASP THR ILE SEQRES 13 A 311 SER TYR ARG VAL LEU LEU PRO ASN GLY GLN LYS ALA TRP SEQRES 14 A 311 LEU ARG LYS ASN ASP GLY THR PHE TYR ARG SER GLN ASN SEQRES 15 A 311 ASP ILE PRO THR PRO ALA ALA ASP ASP LEU ILE ASN THR SEQRES 16 A 311 GLY LYS MSE PHE LEU GLY LEU PRO TYR ILE TRP ALA GLY SEQRES 17 A 311 THR SER GLY PHE GLY PHE ASP OCS SER GLY PHE THR HIS SEQRES 18 A 311 THR ILE TYR LYS SER HIS GLY ILE THR ILE PRO ARG ASP SEQRES 19 A 311 SER GLY PRO GLN SER ARG ASN GLY VAL ALA VAL ASP LYS SEQRES 20 A 311 GLU HIS LEU GLN LYS GLY ASP LEU ILE PHE PHE ALA HIS SEQRES 21 A 311 ASP GLN GLY LYS GLY SER VAL HIS HIS VAL ALA MSE TYR SEQRES 22 A 311 ILE GLY ASP GLY ASN MSE ILE HIS SER PRO ARG ALA GLU SEQRES 23 A 311 ARG SER VAL GLU ILE ILE PRO LEU ASN THR PRO GLY TYR SEQRES 24 A 311 ILE GLU GLU TYR ALA GLY ALA ARG ARG TYR LEU PRO MODRES 3H41 MSE A 68 MET SELENOMETHIONINE MODRES 3H41 MSE A 122 MET SELENOMETHIONINE MODRES 3H41 MSE A 220 MET SELENOMETHIONINE MODRES 3H41 OCS A 238 CYS CYSTEINESULFONIC ACID MODRES 3H41 MSE A 294 MET SELENOMETHIONINE MODRES 3H41 MSE A 301 MET SELENOMETHIONINE HET MSE A 68 8 HET MSE A 122 8 HET MSE A 220 8 HET OCS A 238 9 HET MSE A 294 8 HET MSE A 301 8 HET ALA A 501 5 HET DGL A 502 10 HET PO4 A 1 5 HET PG4 A 2 13 HET PG4 A 3 10 HET PG4 A 4 7 HET PG4 A 5 10 HET PG4 A 6 13 HET PG4 A 7 7 HETNAM MSE SELENOMETHIONINE HETNAM OCS CYSTEINESULFONIC ACID HETNAM ALA ALANINE HETNAM DGL D-GLUTAMIC ACID HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 ALA C3 H7 N O2 FORMUL 3 DGL C5 H9 N O4 FORMUL 4 PO4 O4 P 3- FORMUL 5 PG4 6(C8 H18 O5) FORMUL 11 HOH *265(H2 O) HELIX 1 1 ARG A 48 ILE A 50 5 3 HELIX 2 2 ASP A 51 THR A 56 1 6 HELIX 3 3 ASP A 60 MSE A 68 1 9 HELIX 4 4 THR A 69 ALA A 79 1 11 HELIX 5 5 ASN A 130 LYS A 136 1 7 HELIX 6 6 SER A 202 ILE A 206 5 5 HELIX 7 7 ALA A 210 MSE A 220 1 11 HELIX 8 8 ASP A 237 SER A 248 1 12 HELIX 9 9 ASP A 256 SER A 261 1 6 HELIX 10 10 ASP A 268 LEU A 272 5 5 HELIX 11 11 HIS A 282 LYS A 286 1 5 HELIX 12 12 GLY A 320 GLU A 324 1 5 SHEET 1 A 5 TYR A 118 PRO A 123 0 SHEET 2 A 5 TRP A 101 VAL A 106 -1 N VAL A 102 O MSE A 122 SHEET 3 A 5 GLU A 91 LYS A 98 -1 N LYS A 98 O TRP A 101 SHEET 4 A 5 LYS A 30 ILE A 33 -1 N ALA A 31 O VAL A 92 SHEET 5 A 5 LEU A 127 THR A 128 -1 O THR A 128 N PHE A 32 SHEET 1 B 2 ALA A 37 TRP A 41 0 SHEET 2 B 2 LEU A 82 LEU A 87 -1 O GLU A 83 N LEU A 40 SHEET 1 C 7 SER A 161 SER A 165 0 SHEET 2 C 7 THR A 148 ILE A 153 -1 N ALA A 149 O VAL A 164 SHEET 3 C 7 LYS A 189 ARG A 193 -1 O TRP A 191 N TYR A 152 SHEET 4 C 7 SER A 179 LEU A 183 -1 N VAL A 182 O ALA A 190 SHEET 5 C 7 ARG A 169 GLU A 175 -1 N LEU A 173 O ARG A 181 SHEET 6 C 7 PHE A 141 VAL A 144 -1 N VAL A 142 O LEU A 170 SHEET 7 C 7 GLY A 197 TYR A 200 -1 O THR A 198 N LEU A 143 SHEET 1 D 2 THR A 231 SER A 232 0 SHEET 2 D 2 GLY A 235 PHE A 236 -1 O GLY A 235 N SER A 232 SHEET 1 E 6 VAL A 265 VAL A 267 0 SHEET 2 E 6 TYR A 325 ARG A 330 -1 O ALA A 328 N VAL A 267 SHEET 3 E 6 LEU A 277 ALA A 281 -1 N PHE A 279 O ALA A 326 SHEET 4 E 6 VAL A 289 GLY A 297 -1 O ALA A 293 N ILE A 278 SHEET 5 E 6 ASN A 300 HIS A 303 -1 O ILE A 302 N MSE A 294 SHEET 6 E 6 GLU A 312 PRO A 315 -1 O ILE A 314 N MSE A 301 LINK C SER A 67 N MSE A 68 1555 1555 1.34 LINK C MSE A 68 N THR A 69 1555 1555 1.32 LINK C TRP A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N PRO A 123 1555 1555 1.35 LINK C LYS A 219 N MSE A 220 1555 1555 1.34 LINK C MSE A 220 N PHE A 221 1555 1555 1.33 LINK C ASP A 237 N OCS A 238 1555 1555 1.32 LINK C OCS A 238 N SER A 239 1555 1555 1.34 LINK C ALA A 293 N MSE A 294 1555 1555 1.32 LINK C MSE A 294 N TYR A 295 1555 1555 1.33 LINK C ASN A 300 N MSE A 301 1555 1555 1.33 LINK C MSE A 301 N ILE A 302 1555 1555 1.33 LINK C ALA A 501 N DGL A 502 1555 1555 1.33 CISPEP 1 ASN A 57 PRO A 58 0 0.91 CISPEP 2 ASN A 154 PRO A 155 0 2.57 SITE 1 AC1 7 GLU A 83 TYR A 118 TRP A 228 ASP A 237 SITE 2 AC1 7 ASP A 256 DGL A 502 HOH A 583 SITE 1 AC2 10 TRP A 228 ASP A 237 OCS A 238 SER A 239 SITE 2 AC2 10 ASP A 256 SER A 257 HIS A 290 ALA A 501 SITE 3 AC2 10 HOH A 555 HOH A 722 SITE 1 AC3 7 SER A 156 GLU A 157 LYS A 158 LYS A 160 SITE 2 AC3 7 GLN A 188 HOH A 609 HOH A 620 SITE 1 AC4 4 ILE A 215 ASN A 216 LYS A 219 ILE A 296 SITE 1 AC5 6 LEU A 47 THR A 56 ASP A 100 LYS A 125 SITE 2 AC5 6 HOH A 541 HOH A 702 SITE 1 AC6 6 ASP A 34 ILE A 153 PRO A 185 ASN A 186 SITE 2 AC6 6 HOH A 511 HOH A 603 SITE 1 AC7 6 THR A 208 ALA A 210 GLY A 258 ARG A 262 SITE 2 AC7 6 SER A 288 HOH A 622 SITE 1 AC8 7 ASN A 154 SER A 174 ASP A 176 ILE A 178 SITE 2 AC8 7 SER A 179 TRP A 191 HOH A 569 SITE 1 AC9 9 MSE A 68 THR A 69 LEU A 70 LYS A 73 SITE 2 AC9 9 ALA A 307 GLU A 308 ARG A 309 SER A 310 SITE 3 AC9 9 HOH A 559 CRYST1 95.205 59.373 61.333 90.00 103.27 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010504 0.000000 0.002478 0.00000 SCALE2 0.000000 0.016843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016752 0.00000