data_3H4O # _entry.id 3H4O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3H4O pdb_00003h4o 10.2210/pdb3h4o/pdb RCSB RCSB052687 ? ? WWPDB D_1000052687 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391667 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3H4O _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of NITROREDUCTASE FAMILY PROTEIN (YP_001089872.1) from CLOSTRIDIUM DIFFICILE 630 at 1.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3H4O _cell.length_a 77.897 _cell.length_b 63.487 _cell.length_c 55.465 _cell.angle_alpha 90.00 _cell.angle_beta 131.11 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3H4O _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NITROREDUCTASE FAMILY PROTEIN' 22310.746 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 1 ? ? ? ? 5 water nat water 18.015 294 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)NFVELAKKRYSCRNYQDRKVEKEKLEKVLDVARIAPTGGNRQPQRLIVIQEK EGINKLSKAANIYDAPLAILVCGDKDKVWTRPFDGKQLTDIDTSIVTDH(MSE)(MSE)LQATELGLASVWVCYFNPDII REEFSLPDNLEPINILL(MSE)GYESKIPESPERHEKTRVPLSEIVSYETL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMNFVELAKKRYSCRNYQDRKVEKEKLEKVLDVARIAPTGGNRQPQRLIVIQEKEGINKLSK AANIYDAPLAILVCGDKDKVWTRPFDGKQLTDIDTSIVTDHMMLQATELGLASVWVCYFNPDIIREEFSLPDNLEPINIL LMGYESKIPESPERHEKTRVPLSEIVSYETL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 391667 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 ASN n 1 22 PHE n 1 23 VAL n 1 24 GLU n 1 25 LEU n 1 26 ALA n 1 27 LYS n 1 28 LYS n 1 29 ARG n 1 30 TYR n 1 31 SER n 1 32 CYS n 1 33 ARG n 1 34 ASN n 1 35 TYR n 1 36 GLN n 1 37 ASP n 1 38 ARG n 1 39 LYS n 1 40 VAL n 1 41 GLU n 1 42 LYS n 1 43 GLU n 1 44 LYS n 1 45 LEU n 1 46 GLU n 1 47 LYS n 1 48 VAL n 1 49 LEU n 1 50 ASP n 1 51 VAL n 1 52 ALA n 1 53 ARG n 1 54 ILE n 1 55 ALA n 1 56 PRO n 1 57 THR n 1 58 GLY n 1 59 GLY n 1 60 ASN n 1 61 ARG n 1 62 GLN n 1 63 PRO n 1 64 GLN n 1 65 ARG n 1 66 LEU n 1 67 ILE n 1 68 VAL n 1 69 ILE n 1 70 GLN n 1 71 GLU n 1 72 LYS n 1 73 GLU n 1 74 GLY n 1 75 ILE n 1 76 ASN n 1 77 LYS n 1 78 LEU n 1 79 SER n 1 80 LYS n 1 81 ALA n 1 82 ALA n 1 83 ASN n 1 84 ILE n 1 85 TYR n 1 86 ASP n 1 87 ALA n 1 88 PRO n 1 89 LEU n 1 90 ALA n 1 91 ILE n 1 92 LEU n 1 93 VAL n 1 94 CYS n 1 95 GLY n 1 96 ASP n 1 97 LYS n 1 98 ASP n 1 99 LYS n 1 100 VAL n 1 101 TRP n 1 102 THR n 1 103 ARG n 1 104 PRO n 1 105 PHE n 1 106 ASP n 1 107 GLY n 1 108 LYS n 1 109 GLN n 1 110 LEU n 1 111 THR n 1 112 ASP n 1 113 ILE n 1 114 ASP n 1 115 THR n 1 116 SER n 1 117 ILE n 1 118 VAL n 1 119 THR n 1 120 ASP n 1 121 HIS n 1 122 MSE n 1 123 MSE n 1 124 LEU n 1 125 GLN n 1 126 ALA n 1 127 THR n 1 128 GLU n 1 129 LEU n 1 130 GLY n 1 131 LEU n 1 132 ALA n 1 133 SER n 1 134 VAL n 1 135 TRP n 1 136 VAL n 1 137 CYS n 1 138 TYR n 1 139 PHE n 1 140 ASN n 1 141 PRO n 1 142 ASP n 1 143 ILE n 1 144 ILE n 1 145 ARG n 1 146 GLU n 1 147 GLU n 1 148 PHE n 1 149 SER n 1 150 LEU n 1 151 PRO n 1 152 ASP n 1 153 ASN n 1 154 LEU n 1 155 GLU n 1 156 PRO n 1 157 ILE n 1 158 ASN n 1 159 ILE n 1 160 LEU n 1 161 LEU n 1 162 MSE n 1 163 GLY n 1 164 TYR n 1 165 GLU n 1 166 SER n 1 167 LYS n 1 168 ILE n 1 169 PRO n 1 170 GLU n 1 171 SER n 1 172 PRO n 1 173 GLU n 1 174 ARG n 1 175 HIS n 1 176 GLU n 1 177 LYS n 1 178 THR n 1 179 ARG n 1 180 VAL n 1 181 PRO n 1 182 LEU n 1 183 SER n 1 184 GLU n 1 185 ILE n 1 186 VAL n 1 187 SER n 1 188 TYR n 1 189 GLU n 1 190 THR n 1 191 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CD3355, YP_001089872.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium difficile 630' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272563 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q180K0_CLOD6 _struct_ref.pdbx_db_accession Q180K0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNFVELAKKRYSCRNYQDRKVEKEKLEKVLDVARIAPTGGNRQPQRLIVIQEKEGINKLSKAANIYDAPLAILVCGDKDK VWTRPFDGKQLTDIDTSIVTDHMMLQATELGLASVWVCYFNPDIIREEFSLPDNLEPINILLMGYESKIPESPERHEKTR VPLSEIVSYETL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3H4O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q180K0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 172 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 172 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3H4O MSE A 1 ? UNP Q180K0 ? ? 'expression tag' -18 1 1 3H4O GLY A 2 ? UNP Q180K0 ? ? 'expression tag' -17 2 1 3H4O SER A 3 ? UNP Q180K0 ? ? 'expression tag' -16 3 1 3H4O ASP A 4 ? UNP Q180K0 ? ? 'expression tag' -15 4 1 3H4O LYS A 5 ? UNP Q180K0 ? ? 'expression tag' -14 5 1 3H4O ILE A 6 ? UNP Q180K0 ? ? 'expression tag' -13 6 1 3H4O HIS A 7 ? UNP Q180K0 ? ? 'expression tag' -12 7 1 3H4O HIS A 8 ? UNP Q180K0 ? ? 'expression tag' -11 8 1 3H4O HIS A 9 ? UNP Q180K0 ? ? 'expression tag' -10 9 1 3H4O HIS A 10 ? UNP Q180K0 ? ? 'expression tag' -9 10 1 3H4O HIS A 11 ? UNP Q180K0 ? ? 'expression tag' -8 11 1 3H4O HIS A 12 ? UNP Q180K0 ? ? 'expression tag' -7 12 1 3H4O GLU A 13 ? UNP Q180K0 ? ? 'expression tag' -6 13 1 3H4O ASN A 14 ? UNP Q180K0 ? ? 'expression tag' -5 14 1 3H4O LEU A 15 ? UNP Q180K0 ? ? 'expression tag' -4 15 1 3H4O TYR A 16 ? UNP Q180K0 ? ? 'expression tag' -3 16 1 3H4O PHE A 17 ? UNP Q180K0 ? ? 'expression tag' -2 17 1 3H4O GLN A 18 ? UNP Q180K0 ? ? 'expression tag' -1 18 1 3H4O GLY A 19 ? UNP Q180K0 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3H4O # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.89 _exptl_crystal.description 'DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND .' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '35.0000% Dioxane, 0.001 M flavin mononucleotide (FMN), NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2009-02-22 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97840 1.0 3 0.97883 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97840,0.97883 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3H4O _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 29.348 _reflns.number_obs 32401 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.percent_possible_obs 96.600 _reflns.B_iso_Wilson_estimate 12.217 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.970 _reflns.pdbx_redundancy 3.0 _reflns.R_free_details ;DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND . ; _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.50 1.55 8022 ? 5479 0.388 1.8 ? ? ? ? ? 90.90 ? 1 1.55 1.62 10850 ? 7054 0.324 2.3 ? ? ? ? ? 97.00 ? 2 1.62 1.69 9210 ? 5968 0.258 2.9 ? ? ? ? ? 97.80 ? 3 1.69 1.78 9737 ? 6318 0.196 3.7 ? ? ? ? ? 97.60 ? 4 1.78 1.89 9612 ? 6204 0.136 5.3 ? ? ? ? ? 97.80 ? 5 1.89 2.04 9989 ? 6446 0.087 7.8 ? ? ? ? ? 97.70 ? 6 2.04 2.24 9526 ? 6117 0.061 11.0 ? ? ? ? ? 97.50 ? 7 2.24 2.56 9791 ? 6253 0.046 14.1 ? ? ? ? ? 97.60 ? 8 2.56 3.23 9980 ? 6315 0.030 19.8 ? ? ? ? ? 96.80 ? 9 3.23 29.348 9988 ? 6241 0.019 30.6 ? ? ? ? ? 95.40 ? 10 # _refine.entry_id 3H4O _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 29.348 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.470 _refine.ls_number_reflns_obs 32400 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. A FLAVIN MONONUCLEOTIDE (FMN) MOLECULE IS MODELED INTO THE PUTATIVE ACTIVE SITE ON EACH SUBUNIT. THE FMN RESTRAINTS WERE CHANGED TO ALLOW BENDING OF THE ISOALLOXAZINE RING ALONG THE N5-N10 VIRTUAL AXIS RESULTING IN AN IMPROVED FIT BETWEEN THE FMN COORDINATES AND ELECTRON DENSITY. 4. (4S)- and (4R)-2-METHYL-2,4-PENTANEDIOL (MPD / MRD) MOLECULES WERE MODELED BASED ON THE CRYOPROTECTION CONDITION. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.141 _refine.ls_R_factor_R_work 0.139 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.167 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1637 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.258 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.390 _refine.aniso_B[2][2] 0.050 _refine.aniso_B[3][3] -0.580 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.700 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.059 _refine.pdbx_overall_ESU_R_Free 0.062 _refine.overall_SU_ML 0.042 _refine.overall_SU_B 1.112 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 57.68 _refine.B_iso_min 3.62 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1381 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 294 _refine_hist.number_atoms_total 1722 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 29.348 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1549 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1078 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2114 1.540 2.022 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2652 0.959 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 191 5.764 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 67 35.170 24.627 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 293 12.883 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 11 10.705 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 233 0.087 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1702 0.008 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 283 0.002 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 300 0.216 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 1154 0.202 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 770 0.176 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 766 0.088 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 210 0.145 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 12 0.230 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 67 0.255 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 34 0.171 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 964 1.865 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 360 0.425 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1519 2.437 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 684 4.034 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 595 6.186 11.000 ? ? # _refine_ls_shell.d_res_high 1.501 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.300 _refine_ls_shell.number_reflns_R_work 2187 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.214 _refine_ls_shell.R_factor_R_free 0.264 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 116 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2303 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3H4O _struct.title 'Crystal structure of a nitroreductase family protein (cd3355) from clostridium difficile 630 at 1.50 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, oxidoreductase' _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 3H4O # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 21 ? ARG A 29 ? ASN A 2 ARG A 10 1 ? 9 HELX_P HELX_P2 2 GLU A 41 ? ALA A 55 ? GLU A 22 ALA A 36 1 ? 15 HELX_P HELX_P3 3 THR A 57 ? ARG A 61 ? THR A 38 ARG A 42 5 ? 5 HELX_P HELX_P4 4 GLU A 71 ? ALA A 82 ? GLU A 52 ALA A 63 1 ? 12 HELX_P HELX_P5 5 LEU A 110 ? LEU A 129 ? LEU A 91 LEU A 110 1 ? 20 HELX_P HELX_P6 6 ASN A 140 ? PHE A 148 ? ASN A 121 PHE A 129 1 ? 9 HELX_P HELX_P7 7 ARG A 174 ? ARG A 179 ? ARG A 155 ARG A 160 1 ? 6 HELX_P HELX_P8 8 PRO A 181 ? ILE A 185 ? PRO A 162 ILE A 166 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 20 C ? ? ? 1_555 A ASN 21 N ? ? A MSE 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A HIS 121 C ? ? ? 1_555 A MSE 122 N ? ? A HIS 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A MSE 122 C ? ? ? 1_555 A MSE 123 N ? ? A MSE 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 123 C ? ? ? 1_555 A LEU 124 N ? ? A MSE 104 A LEU 105 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? A LEU 161 C ? ? ? 1_555 A MSE 162 N A ? A LEU 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A LEU 161 C ? ? ? 1_555 A MSE 162 N B ? A LEU 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? A MSE 162 C A ? ? 1_555 A GLY 163 N ? ? A MSE 143 A GLY 144 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A MSE 162 C B ? ? 1_555 A GLY 163 N ? ? A MSE 143 A GLY 144 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 64 ? ILE A 69 ? GLN A 45 ILE A 50 A 2 LEU A 89 ? ASP A 96 ? LEU A 70 ASP A 77 A 3 LEU A 154 ? GLY A 163 ? LEU A 135 GLY A 144 A 4 ALA A 132 ? VAL A 136 ? ALA A 113 VAL A 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 69 ? N ILE A 50 O ALA A 90 ? O ALA A 71 A 2 3 N VAL A 93 ? N VAL A 74 O ASN A 158 ? O ASN A 139 A 3 4 O LEU A 161 ? O LEU A 142 N VAL A 134 ? N VAL A 115 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 300 ? 24 'BINDING SITE FOR RESIDUE FMN A 300' AC2 Software A MPD 173 ? 4 'BINDING SITE FOR RESIDUE MPD A 173' AC3 Software A MRD 174 ? 7 'BINDING SITE FOR RESIDUE MRD A 174' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 24 ARG A 29 ? ARG A 10 . ? 1_555 ? 2 AC1 24 SER A 31 ? SER A 12 . ? 1_555 ? 3 AC1 24 ARG A 33 ? ARG A 14 . ? 1_555 ? 4 AC1 24 PRO A 56 ? PRO A 37 . ? 2_555 ? 5 AC1 24 THR A 57 ? THR A 38 . ? 2_555 ? 6 AC1 24 GLY A 58 ? GLY A 39 . ? 2_555 ? 7 AC1 24 ASN A 60 ? ASN A 41 . ? 2_555 ? 8 AC1 24 TYR A 85 ? TYR A 66 . ? 1_555 ? 9 AC1 24 ILE A 113 ? ILE A 94 . ? 2_555 ? 10 AC1 24 ASP A 114 ? ASP A 95 . ? 2_555 ? 11 AC1 24 ILE A 117 ? ILE A 98 . ? 2_555 ? 12 AC1 24 VAL A 134 ? VAL A 115 . ? 1_555 ? 13 AC1 24 TRP A 135 ? TRP A 116 . ? 1_555 ? 14 AC1 24 VAL A 136 ? VAL A 117 . ? 1_555 ? 15 AC1 24 CYS A 137 ? CYS A 118 . ? 1_555 ? 16 AC1 24 TYR A 138 ? TYR A 119 . ? 1_555 ? 17 AC1 24 GLU A 170 ? GLU A 151 . ? 1_555 ? 18 AC1 24 ARG A 174 ? ARG A 155 . ? 1_555 ? 19 AC1 24 ARG A 179 ? ARG A 160 . ? 1_555 ? 20 AC1 24 MPD C . ? MPD A 173 . ? 1_555 ? 21 AC1 24 HOH E . ? HOH A 305 . ? 1_555 ? 22 AC1 24 HOH E . ? HOH A 320 . ? 1_555 ? 23 AC1 24 HOH E . ? HOH A 328 . ? 1_555 ? 24 AC1 24 HOH E . ? HOH A 345 . ? 1_555 ? 25 AC2 4 GLY A 59 ? GLY A 40 . ? 2_555 ? 26 AC2 4 TRP A 101 ? TRP A 82 . ? 2_555 ? 27 AC2 4 HOH E . ? HOH A 272 . ? 1_555 ? 28 AC2 4 FMN B . ? FMN A 300 . ? 1_555 ? 29 AC3 7 ALA A 81 ? ALA A 62 . ? 1_555 ? 30 AC3 7 ALA A 82 ? ALA A 63 . ? 1_555 ? 31 AC3 7 PHE A 105 ? PHE A 86 . ? 2_555 ? 32 AC3 7 TYR A 138 ? TYR A 119 . ? 1_555 ? 33 AC3 7 HOH E . ? HOH A 282 . ? 1_555 ? 34 AC3 7 HOH E . ? HOH A 324 . ? 1_555 ? 35 AC3 7 HOH E . ? HOH A 396 . ? 4_454 ? # _atom_sites.entry_id 3H4O _atom_sites.fract_transf_matrix[1][1] 0.012837 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011203 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015751 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023929 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 ? ? ? A . n A 1 15 LEU 15 -4 ? ? ? A . n A 1 16 TYR 16 -3 ? ? ? A . n A 1 17 PHE 17 -2 ? ? ? A . n A 1 18 GLN 18 -1 ? ? ? A . n A 1 19 GLY 19 0 ? ? ? A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 ASN 21 2 2 ASN ASN A . n A 1 22 PHE 22 3 3 PHE PHE A . n A 1 23 VAL 23 4 4 VAL VAL A . n A 1 24 GLU 24 5 5 GLU GLU A . n A 1 25 LEU 25 6 6 LEU LEU A . n A 1 26 ALA 26 7 7 ALA ALA A . n A 1 27 LYS 27 8 8 LYS LYS A . n A 1 28 LYS 28 9 9 LYS LYS A . n A 1 29 ARG 29 10 10 ARG ARG A . n A 1 30 TYR 30 11 11 TYR TYR A . n A 1 31 SER 31 12 12 SER SER A . n A 1 32 CYS 32 13 13 CYS CYS A . n A 1 33 ARG 33 14 14 ARG ARG A . n A 1 34 ASN 34 15 15 ASN ASN A . n A 1 35 TYR 35 16 16 TYR TYR A . n A 1 36 GLN 36 17 17 GLN GLN A . n A 1 37 ASP 37 18 18 ASP ASP A . n A 1 38 ARG 38 19 19 ARG ARG A . n A 1 39 LYS 39 20 20 LYS LYS A . n A 1 40 VAL 40 21 21 VAL VAL A . n A 1 41 GLU 41 22 22 GLU GLU A . n A 1 42 LYS 42 23 23 LYS LYS A . n A 1 43 GLU 43 24 24 GLU GLU A . n A 1 44 LYS 44 25 25 LYS LYS A . n A 1 45 LEU 45 26 26 LEU LEU A . n A 1 46 GLU 46 27 27 GLU GLU A . n A 1 47 LYS 47 28 28 LYS LYS A . n A 1 48 VAL 48 29 29 VAL VAL A . n A 1 49 LEU 49 30 30 LEU LEU A . n A 1 50 ASP 50 31 31 ASP ASP A . n A 1 51 VAL 51 32 32 VAL VAL A . n A 1 52 ALA 52 33 33 ALA ALA A . n A 1 53 ARG 53 34 34 ARG ARG A . n A 1 54 ILE 54 35 35 ILE ILE A . n A 1 55 ALA 55 36 36 ALA ALA A . n A 1 56 PRO 56 37 37 PRO PRO A . n A 1 57 THR 57 38 38 THR THR A . n A 1 58 GLY 58 39 39 GLY GLY A . n A 1 59 GLY 59 40 40 GLY GLY A . n A 1 60 ASN 60 41 41 ASN ASN A . n A 1 61 ARG 61 42 42 ARG ARG A . n A 1 62 GLN 62 43 43 GLN GLN A . n A 1 63 PRO 63 44 44 PRO PRO A . n A 1 64 GLN 64 45 45 GLN GLN A . n A 1 65 ARG 65 46 46 ARG ARG A . n A 1 66 LEU 66 47 47 LEU LEU A . n A 1 67 ILE 67 48 48 ILE ILE A . n A 1 68 VAL 68 49 49 VAL VAL A . n A 1 69 ILE 69 50 50 ILE ILE A . n A 1 70 GLN 70 51 51 GLN GLN A . n A 1 71 GLU 71 52 52 GLU GLU A . n A 1 72 LYS 72 53 53 LYS LYS A . n A 1 73 GLU 73 54 54 GLU GLU A . n A 1 74 GLY 74 55 55 GLY GLY A . n A 1 75 ILE 75 56 56 ILE ILE A . n A 1 76 ASN 76 57 57 ASN ASN A . n A 1 77 LYS 77 58 58 LYS LYS A . n A 1 78 LEU 78 59 59 LEU LEU A . n A 1 79 SER 79 60 60 SER SER A . n A 1 80 LYS 80 61 61 LYS LYS A . n A 1 81 ALA 81 62 62 ALA ALA A . n A 1 82 ALA 82 63 63 ALA ALA A . n A 1 83 ASN 83 64 64 ASN ASN A . n A 1 84 ILE 84 65 65 ILE ILE A . n A 1 85 TYR 85 66 66 TYR TYR A . n A 1 86 ASP 86 67 67 ASP ASP A . n A 1 87 ALA 87 68 68 ALA ALA A . n A 1 88 PRO 88 69 69 PRO PRO A . n A 1 89 LEU 89 70 70 LEU LEU A . n A 1 90 ALA 90 71 71 ALA ALA A . n A 1 91 ILE 91 72 72 ILE ILE A . n A 1 92 LEU 92 73 73 LEU LEU A . n A 1 93 VAL 93 74 74 VAL VAL A . n A 1 94 CYS 94 75 75 CYS CYS A . n A 1 95 GLY 95 76 76 GLY GLY A . n A 1 96 ASP 96 77 77 ASP ASP A . n A 1 97 LYS 97 78 78 LYS LYS A . n A 1 98 ASP 98 79 79 ASP ASP A . n A 1 99 LYS 99 80 80 LYS LYS A . n A 1 100 VAL 100 81 81 VAL VAL A . n A 1 101 TRP 101 82 82 TRP TRP A . n A 1 102 THR 102 83 83 THR THR A . n A 1 103 ARG 103 84 84 ARG ARG A . n A 1 104 PRO 104 85 85 PRO PRO A . n A 1 105 PHE 105 86 86 PHE PHE A . n A 1 106 ASP 106 87 87 ASP ASP A . n A 1 107 GLY 107 88 88 GLY GLY A . n A 1 108 LYS 108 89 89 LYS LYS A . n A 1 109 GLN 109 90 90 GLN GLN A . n A 1 110 LEU 110 91 91 LEU LEU A . n A 1 111 THR 111 92 92 THR THR A . n A 1 112 ASP 112 93 93 ASP ASP A . n A 1 113 ILE 113 94 94 ILE ILE A . n A 1 114 ASP 114 95 95 ASP ASP A . n A 1 115 THR 115 96 96 THR THR A . n A 1 116 SER 116 97 97 SER SER A . n A 1 117 ILE 117 98 98 ILE ILE A . n A 1 118 VAL 118 99 99 VAL VAL A . n A 1 119 THR 119 100 100 THR THR A . n A 1 120 ASP 120 101 101 ASP ASP A . n A 1 121 HIS 121 102 102 HIS HIS A . n A 1 122 MSE 122 103 103 MSE MSE A . n A 1 123 MSE 123 104 104 MSE MSE A . n A 1 124 LEU 124 105 105 LEU LEU A . n A 1 125 GLN 125 106 106 GLN GLN A . n A 1 126 ALA 126 107 107 ALA ALA A . n A 1 127 THR 127 108 108 THR THR A . n A 1 128 GLU 128 109 109 GLU GLU A . n A 1 129 LEU 129 110 110 LEU LEU A . n A 1 130 GLY 130 111 111 GLY GLY A . n A 1 131 LEU 131 112 112 LEU LEU A . n A 1 132 ALA 132 113 113 ALA ALA A . n A 1 133 SER 133 114 114 SER SER A . n A 1 134 VAL 134 115 115 VAL VAL A . n A 1 135 TRP 135 116 116 TRP TRP A . n A 1 136 VAL 136 117 117 VAL VAL A . n A 1 137 CYS 137 118 118 CYS CYS A . n A 1 138 TYR 138 119 119 TYR TYR A . n A 1 139 PHE 139 120 120 PHE PHE A . n A 1 140 ASN 140 121 121 ASN ASN A . n A 1 141 PRO 141 122 122 PRO PRO A . n A 1 142 ASP 142 123 123 ASP ASP A . n A 1 143 ILE 143 124 124 ILE ILE A . n A 1 144 ILE 144 125 125 ILE ILE A . n A 1 145 ARG 145 126 126 ARG ARG A . n A 1 146 GLU 146 127 127 GLU GLU A . n A 1 147 GLU 147 128 128 GLU GLU A . n A 1 148 PHE 148 129 129 PHE PHE A . n A 1 149 SER 149 130 130 SER SER A . n A 1 150 LEU 150 131 131 LEU LEU A . n A 1 151 PRO 151 132 132 PRO PRO A . n A 1 152 ASP 152 133 133 ASP ASP A . n A 1 153 ASN 153 134 134 ASN ASN A . n A 1 154 LEU 154 135 135 LEU LEU A . n A 1 155 GLU 155 136 136 GLU GLU A . n A 1 156 PRO 156 137 137 PRO PRO A . n A 1 157 ILE 157 138 138 ILE ILE A . n A 1 158 ASN 158 139 139 ASN ASN A . n A 1 159 ILE 159 140 140 ILE ILE A . n A 1 160 LEU 160 141 141 LEU LEU A . n A 1 161 LEU 161 142 142 LEU LEU A . n A 1 162 MSE 162 143 143 MSE MSE A . n A 1 163 GLY 163 144 144 GLY GLY A . n A 1 164 TYR 164 145 145 TYR TYR A . n A 1 165 GLU 165 146 146 GLU GLU A . n A 1 166 SER 166 147 147 SER SER A . n A 1 167 LYS 167 148 148 LYS LYS A . n A 1 168 ILE 168 149 149 ILE ILE A . n A 1 169 PRO 169 150 150 PRO PRO A . n A 1 170 GLU 170 151 151 GLU GLU A . n A 1 171 SER 171 152 152 SER SER A . n A 1 172 PRO 172 153 153 PRO PRO A . n A 1 173 GLU 173 154 154 GLU GLU A . n A 1 174 ARG 174 155 155 ARG ARG A . n A 1 175 HIS 175 156 156 HIS HIS A . n A 1 176 GLU 176 157 157 GLU GLU A . n A 1 177 LYS 177 158 158 LYS LYS A . n A 1 178 THR 178 159 159 THR THR A . n A 1 179 ARG 179 160 160 ARG ARG A . n A 1 180 VAL 180 161 161 VAL VAL A . n A 1 181 PRO 181 162 162 PRO PRO A . n A 1 182 LEU 182 163 163 LEU LEU A . n A 1 183 SER 183 164 164 SER SER A . n A 1 184 GLU 184 165 165 GLU GLU A . n A 1 185 ILE 185 166 166 ILE ILE A . n A 1 186 VAL 186 167 167 VAL VAL A . n A 1 187 SER 187 168 168 SER SER A . n A 1 188 TYR 188 169 169 TYR TYR A . n A 1 189 GLU 189 170 170 GLU GLU A . n A 1 190 THR 190 171 171 THR THR A . n A 1 191 LEU 191 172 172 LEU LEU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 300 300 FMN FMN A . C 3 MPD 1 173 173 MPD MPD A . D 4 MRD 1 174 174 MRD MRD A . E 5 HOH 1 175 175 HOH HOH A . E 5 HOH 2 176 176 HOH HOH A . E 5 HOH 3 177 177 HOH HOH A . E 5 HOH 4 178 178 HOH HOH A . E 5 HOH 5 179 179 HOH HOH A . E 5 HOH 6 180 180 HOH HOH A . E 5 HOH 7 181 181 HOH HOH A . E 5 HOH 8 182 182 HOH HOH A . E 5 HOH 9 183 183 HOH HOH A . E 5 HOH 10 184 184 HOH HOH A . E 5 HOH 11 185 185 HOH HOH A . E 5 HOH 12 186 186 HOH HOH A . E 5 HOH 13 187 187 HOH HOH A . E 5 HOH 14 188 188 HOH HOH A . E 5 HOH 15 189 189 HOH HOH A . E 5 HOH 16 190 190 HOH HOH A . E 5 HOH 17 191 191 HOH HOH A . E 5 HOH 18 192 192 HOH HOH A . E 5 HOH 19 193 193 HOH HOH A . E 5 HOH 20 194 194 HOH HOH A . E 5 HOH 21 195 195 HOH HOH A . E 5 HOH 22 196 196 HOH HOH A . E 5 HOH 23 197 197 HOH HOH A . E 5 HOH 24 198 198 HOH HOH A . E 5 HOH 25 199 199 HOH HOH A . E 5 HOH 26 200 200 HOH HOH A . E 5 HOH 27 201 201 HOH HOH A . E 5 HOH 28 202 202 HOH HOH A . E 5 HOH 29 203 203 HOH HOH A . E 5 HOH 30 204 204 HOH HOH A . E 5 HOH 31 205 205 HOH HOH A . E 5 HOH 32 206 206 HOH HOH A . E 5 HOH 33 207 207 HOH HOH A . E 5 HOH 34 208 208 HOH HOH A . E 5 HOH 35 209 209 HOH HOH A . E 5 HOH 36 210 210 HOH HOH A . E 5 HOH 37 211 211 HOH HOH A . E 5 HOH 38 212 212 HOH HOH A . E 5 HOH 39 213 213 HOH HOH A . E 5 HOH 40 214 214 HOH HOH A . E 5 HOH 41 215 215 HOH HOH A . E 5 HOH 42 216 216 HOH HOH A . E 5 HOH 43 217 217 HOH HOH A . E 5 HOH 44 218 218 HOH HOH A . E 5 HOH 45 219 219 HOH HOH A . E 5 HOH 46 220 220 HOH HOH A . E 5 HOH 47 221 221 HOH HOH A . E 5 HOH 48 222 222 HOH HOH A . E 5 HOH 49 223 223 HOH HOH A . E 5 HOH 50 224 224 HOH HOH A . E 5 HOH 51 225 225 HOH HOH A . E 5 HOH 52 226 226 HOH HOH A . E 5 HOH 53 227 227 HOH HOH A . E 5 HOH 54 228 228 HOH HOH A . E 5 HOH 55 229 229 HOH HOH A . E 5 HOH 56 230 230 HOH HOH A . E 5 HOH 57 231 231 HOH HOH A . E 5 HOH 58 232 232 HOH HOH A . E 5 HOH 59 233 233 HOH HOH A . E 5 HOH 60 234 234 HOH HOH A . E 5 HOH 61 235 235 HOH HOH A . E 5 HOH 62 236 236 HOH HOH A . E 5 HOH 63 237 237 HOH HOH A . E 5 HOH 64 238 238 HOH HOH A . E 5 HOH 65 239 239 HOH HOH A . E 5 HOH 66 240 240 HOH HOH A . E 5 HOH 67 241 241 HOH HOH A . E 5 HOH 68 242 242 HOH HOH A . E 5 HOH 69 243 243 HOH HOH A . E 5 HOH 70 244 244 HOH HOH A . E 5 HOH 71 245 245 HOH HOH A . E 5 HOH 72 246 246 HOH HOH A . E 5 HOH 73 247 247 HOH HOH A . E 5 HOH 74 248 248 HOH HOH A . E 5 HOH 75 249 249 HOH HOH A . E 5 HOH 76 250 250 HOH HOH A . E 5 HOH 77 251 251 HOH HOH A . E 5 HOH 78 252 252 HOH HOH A . E 5 HOH 79 253 253 HOH HOH A . E 5 HOH 80 254 254 HOH HOH A . E 5 HOH 81 255 255 HOH HOH A . E 5 HOH 82 256 256 HOH HOH A . E 5 HOH 83 257 257 HOH HOH A . E 5 HOH 84 258 258 HOH HOH A . E 5 HOH 85 259 259 HOH HOH A . E 5 HOH 86 260 260 HOH HOH A . E 5 HOH 87 261 261 HOH HOH A . E 5 HOH 88 262 262 HOH HOH A . E 5 HOH 89 263 263 HOH HOH A . E 5 HOH 90 264 264 HOH HOH A . E 5 HOH 91 265 265 HOH HOH A . E 5 HOH 92 266 266 HOH HOH A . E 5 HOH 93 267 267 HOH HOH A . E 5 HOH 94 268 268 HOH HOH A . E 5 HOH 95 269 269 HOH HOH A . E 5 HOH 96 270 270 HOH HOH A . E 5 HOH 97 271 271 HOH HOH A . E 5 HOH 98 272 272 HOH HOH A . E 5 HOH 99 273 273 HOH HOH A . E 5 HOH 100 274 274 HOH HOH A . E 5 HOH 101 275 275 HOH HOH A . E 5 HOH 102 276 276 HOH HOH A . E 5 HOH 103 277 277 HOH HOH A . E 5 HOH 104 278 278 HOH HOH A . E 5 HOH 105 279 279 HOH HOH A . E 5 HOH 106 280 280 HOH HOH A . E 5 HOH 107 281 281 HOH HOH A . E 5 HOH 108 282 282 HOH HOH A . E 5 HOH 109 283 283 HOH HOH A . E 5 HOH 110 284 284 HOH HOH A . E 5 HOH 111 285 285 HOH HOH A . E 5 HOH 112 286 286 HOH HOH A . E 5 HOH 113 287 287 HOH HOH A . E 5 HOH 114 288 288 HOH HOH A . E 5 HOH 115 289 289 HOH HOH A . E 5 HOH 116 290 290 HOH HOH A . E 5 HOH 117 291 291 HOH HOH A . E 5 HOH 118 292 292 HOH HOH A . E 5 HOH 119 293 293 HOH HOH A . E 5 HOH 120 294 294 HOH HOH A . E 5 HOH 121 295 295 HOH HOH A . E 5 HOH 122 296 296 HOH HOH A . E 5 HOH 123 297 297 HOH HOH A . E 5 HOH 124 298 298 HOH HOH A . E 5 HOH 125 299 299 HOH HOH A . E 5 HOH 126 301 301 HOH HOH A . E 5 HOH 127 302 302 HOH HOH A . E 5 HOH 128 303 303 HOH HOH A . E 5 HOH 129 304 304 HOH HOH A . E 5 HOH 130 305 305 HOH HOH A . E 5 HOH 131 306 306 HOH HOH A . E 5 HOH 132 307 307 HOH HOH A . E 5 HOH 133 308 308 HOH HOH A . E 5 HOH 134 309 309 HOH HOH A . E 5 HOH 135 310 310 HOH HOH A . E 5 HOH 136 311 311 HOH HOH A . E 5 HOH 137 312 312 HOH HOH A . E 5 HOH 138 313 313 HOH HOH A . E 5 HOH 139 314 314 HOH HOH A . E 5 HOH 140 315 315 HOH HOH A . E 5 HOH 141 316 316 HOH HOH A . E 5 HOH 142 317 317 HOH HOH A . E 5 HOH 143 318 318 HOH HOH A . E 5 HOH 144 319 319 HOH HOH A . E 5 HOH 145 320 320 HOH HOH A . E 5 HOH 146 321 321 HOH HOH A . E 5 HOH 147 322 322 HOH HOH A . E 5 HOH 148 323 323 HOH HOH A . E 5 HOH 149 324 324 HOH HOH A . E 5 HOH 150 325 325 HOH HOH A . E 5 HOH 151 326 326 HOH HOH A . E 5 HOH 152 327 327 HOH HOH A . E 5 HOH 153 328 328 HOH HOH A . E 5 HOH 154 329 329 HOH HOH A . E 5 HOH 155 330 330 HOH HOH A . E 5 HOH 156 331 331 HOH HOH A . E 5 HOH 157 332 332 HOH HOH A . E 5 HOH 158 333 333 HOH HOH A . E 5 HOH 159 334 334 HOH HOH A . E 5 HOH 160 335 335 HOH HOH A . E 5 HOH 161 336 336 HOH HOH A . E 5 HOH 162 337 337 HOH HOH A . E 5 HOH 163 338 338 HOH HOH A . E 5 HOH 164 339 339 HOH HOH A . E 5 HOH 165 340 340 HOH HOH A . E 5 HOH 166 341 341 HOH HOH A . E 5 HOH 167 342 342 HOH HOH A . E 5 HOH 168 343 343 HOH HOH A . E 5 HOH 169 344 344 HOH HOH A . E 5 HOH 170 345 345 HOH HOH A . E 5 HOH 171 346 346 HOH HOH A . E 5 HOH 172 347 347 HOH HOH A . E 5 HOH 173 348 348 HOH HOH A . E 5 HOH 174 349 349 HOH HOH A . E 5 HOH 175 350 350 HOH HOH A . E 5 HOH 176 351 351 HOH HOH A . E 5 HOH 177 352 352 HOH HOH A . E 5 HOH 178 353 353 HOH HOH A . E 5 HOH 179 354 354 HOH HOH A . E 5 HOH 180 355 355 HOH HOH A . E 5 HOH 181 356 356 HOH HOH A . E 5 HOH 182 357 357 HOH HOH A . E 5 HOH 183 358 358 HOH HOH A . E 5 HOH 184 359 359 HOH HOH A . E 5 HOH 185 360 360 HOH HOH A . E 5 HOH 186 361 361 HOH HOH A . E 5 HOH 187 362 362 HOH HOH A . E 5 HOH 188 363 363 HOH HOH A . E 5 HOH 189 364 364 HOH HOH A . E 5 HOH 190 365 365 HOH HOH A . E 5 HOH 191 366 366 HOH HOH A . E 5 HOH 192 367 367 HOH HOH A . E 5 HOH 193 368 368 HOH HOH A . E 5 HOH 194 369 369 HOH HOH A . E 5 HOH 195 370 370 HOH HOH A . E 5 HOH 196 371 371 HOH HOH A . E 5 HOH 197 372 372 HOH HOH A . E 5 HOH 198 373 373 HOH HOH A . E 5 HOH 199 374 374 HOH HOH A . E 5 HOH 200 375 375 HOH HOH A . E 5 HOH 201 376 376 HOH HOH A . E 5 HOH 202 377 377 HOH HOH A . E 5 HOH 203 378 378 HOH HOH A . E 5 HOH 204 379 379 HOH HOH A . E 5 HOH 205 380 380 HOH HOH A . E 5 HOH 206 381 381 HOH HOH A . E 5 HOH 207 382 382 HOH HOH A . E 5 HOH 208 383 383 HOH HOH A . E 5 HOH 209 384 384 HOH HOH A . E 5 HOH 210 385 385 HOH HOH A . E 5 HOH 211 386 386 HOH HOH A . E 5 HOH 212 387 387 HOH HOH A . E 5 HOH 213 388 388 HOH HOH A . E 5 HOH 214 389 389 HOH HOH A . E 5 HOH 215 390 390 HOH HOH A . E 5 HOH 216 391 391 HOH HOH A . E 5 HOH 217 392 392 HOH HOH A . E 5 HOH 218 393 393 HOH HOH A . E 5 HOH 219 394 394 HOH HOH A . E 5 HOH 220 395 395 HOH HOH A . E 5 HOH 221 396 396 HOH HOH A . E 5 HOH 222 397 397 HOH HOH A . E 5 HOH 223 398 398 HOH HOH A . E 5 HOH 224 399 399 HOH HOH A . E 5 HOH 225 400 400 HOH HOH A . E 5 HOH 226 401 401 HOH HOH A . E 5 HOH 227 402 402 HOH HOH A . E 5 HOH 228 403 403 HOH HOH A . E 5 HOH 229 404 404 HOH HOH A . E 5 HOH 230 405 405 HOH HOH A . E 5 HOH 231 406 406 HOH HOH A . E 5 HOH 232 407 407 HOH HOH A . E 5 HOH 233 408 408 HOH HOH A . E 5 HOH 234 409 409 HOH HOH A . E 5 HOH 235 410 410 HOH HOH A . E 5 HOH 236 411 411 HOH HOH A . E 5 HOH 237 412 412 HOH HOH A . E 5 HOH 238 413 413 HOH HOH A . E 5 HOH 239 414 414 HOH HOH A . E 5 HOH 240 415 415 HOH HOH A . E 5 HOH 241 416 416 HOH HOH A . E 5 HOH 242 417 417 HOH HOH A . E 5 HOH 243 418 418 HOH HOH A . E 5 HOH 244 419 419 HOH HOH A . E 5 HOH 245 420 420 HOH HOH A . E 5 HOH 246 421 421 HOH HOH A . E 5 HOH 247 422 422 HOH HOH A . E 5 HOH 248 423 423 HOH HOH A . E 5 HOH 249 424 424 HOH HOH A . E 5 HOH 250 425 425 HOH HOH A . E 5 HOH 251 426 426 HOH HOH A . E 5 HOH 252 427 427 HOH HOH A . E 5 HOH 253 428 428 HOH HOH A . E 5 HOH 254 429 429 HOH HOH A . E 5 HOH 255 430 430 HOH HOH A . E 5 HOH 256 431 431 HOH HOH A . E 5 HOH 257 432 432 HOH HOH A . E 5 HOH 258 433 433 HOH HOH A . E 5 HOH 259 434 434 HOH HOH A . E 5 HOH 260 435 435 HOH HOH A . E 5 HOH 261 436 436 HOH HOH A . E 5 HOH 262 437 437 HOH HOH A . E 5 HOH 263 438 438 HOH HOH A . E 5 HOH 264 439 439 HOH HOH A . E 5 HOH 265 440 440 HOH HOH A . E 5 HOH 266 441 441 HOH HOH A . E 5 HOH 267 442 442 HOH HOH A . E 5 HOH 268 443 443 HOH HOH A . E 5 HOH 269 444 444 HOH HOH A . E 5 HOH 270 445 445 HOH HOH A . E 5 HOH 271 446 446 HOH HOH A . E 5 HOH 272 447 447 HOH HOH A . E 5 HOH 273 448 448 HOH HOH A . E 5 HOH 274 449 449 HOH HOH A . E 5 HOH 275 450 450 HOH HOH A . E 5 HOH 276 451 451 HOH HOH A . E 5 HOH 277 452 452 HOH HOH A . E 5 HOH 278 453 453 HOH HOH A . E 5 HOH 279 454 454 HOH HOH A . E 5 HOH 280 455 455 HOH HOH A . E 5 HOH 281 456 456 HOH HOH A . E 5 HOH 282 457 457 HOH HOH A . E 5 HOH 283 458 458 HOH HOH A . E 5 HOH 284 459 459 HOH HOH A . E 5 HOH 285 460 460 HOH HOH A . E 5 HOH 286 461 461 HOH HOH A . E 5 HOH 287 462 462 HOH HOH A . E 5 HOH 288 463 463 HOH HOH A . E 5 HOH 289 464 464 HOH HOH A . E 5 HOH 290 465 465 HOH HOH A . E 5 HOH 291 466 466 HOH HOH A . E 5 HOH 292 467 467 HOH HOH A . E 5 HOH 293 468 468 HOH HOH A . E 5 HOH 294 469 469 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 122 A MSE 103 ? MET SELENOMETHIONINE 3 A MSE 123 A MSE 104 ? MET SELENOMETHIONINE 4 A MSE 162 A MSE 143 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9210 ? 1 MORE -73 ? 1 'SSA (A^2)' 14390 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3H4O _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG FOLLOWED BY THE TARGET SEQUENCE.' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 9 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 369 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 155 ? ? CZ A ARG 155 ? ? NH1 A ARG 155 ? ? 123.66 120.30 3.36 0.50 N 2 1 NE A ARG 155 ? ? CZ A ARG 155 ? ? NH2 A ARG 155 ? ? 117.00 120.30 -3.30 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 148 ? ? -125.57 -136.06 2 1 GLU A 170 ? ? 73.45 -43.14 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 1 ? CG ? A MSE 20 CG 2 1 Y 1 A MSE 1 ? SE ? A MSE 20 SE 3 1 Y 1 A MSE 1 ? CE ? A MSE 20 CE 4 1 Y 1 A LYS 158 ? CE ? A LYS 177 CE 5 1 Y 1 A LYS 158 ? NZ ? A LYS 177 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A ASN -5 ? A ASN 14 15 1 Y 1 A LEU -4 ? A LEU 15 16 1 Y 1 A TYR -3 ? A TYR 16 17 1 Y 1 A PHE -2 ? A PHE 17 18 1 Y 1 A GLN -1 ? A GLN 18 19 1 Y 1 A GLY 0 ? A GLY 19 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 5 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #