HEADER HYDROLASE 21-APR-09 3H4U OBSLTE 16-JUN-09 3H4U 3HPA TITLE CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE GI:44264246 FROM AN TITLE 2 EVIRONMENTAL SAMPLE OF SARGASSO SEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMIDOHYDROLASE, SIGNATURE OF ZN LIGANDS, STRUCTURAL KEYWDS 2 GENOMICS, NYSGXRC, TARGET 9236E, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,R.TORO,F.M.RAUSHEL,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 2 16-JUN-09 3H4U 1 OBSLTE REVDAT 1 28-APR-09 3H4U 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,R.TORO,F.M.RAUSHEL, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE GI:44264246 JRNL TITL 2 FROM AN EVIRONMENTAL SAMPLE OF SARGASSO SEA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2073974.630 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2406 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4288 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 243 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6494 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 1.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.81 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.880 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 62.46 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H4U COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB052693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8M SODIUM ACETATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.75000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.37500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.37500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 152.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 MET A 10 REMARK 465 ASN A 11 REMARK 465 LEU A 12 REMARK 465 GLU A 13 REMARK 465 GLN A 14 REMARK 465 HIS A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 ASN A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 ARG A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 186 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 ARG A 189 REMARK 465 ASP A 190 REMARK 465 GLY A 191 REMARK 465 GLY A 192 REMARK 465 LEU A 193 REMARK 465 PRO A 194 REMARK 465 PRO A 195 REMARK 465 ASP A 196 REMARK 465 SER A 197 REMARK 465 VAL A 198 REMARK 465 VAL A 199 REMARK 465 GLU A 200 REMARK 465 ARG A 201 REMARK 465 SER A 270 REMARK 465 ARG A 271 REMARK 465 GLU A 272 REMARK 465 LYS A 273 REMARK 465 PHE A 274 REMARK 465 GLY A 275 REMARK 465 MET A 276 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 6 REMARK 465 GLY B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 MET B 10 REMARK 465 ASN B 11 REMARK 465 LEU B 12 REMARK 465 GLU B 13 REMARK 465 GLN B 14 REMARK 465 HIS B 15 REMARK 465 ALA B 16 REMARK 465 GLY B 17 REMARK 465 ALA B 18 REMARK 465 ARG B 19 REMARK 465 ALA B 20 REMARK 465 PRO B 21 REMARK 465 ASN B 22 REMARK 465 THR B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 ARG B 27 REMARK 465 PRO B 28 REMARK 465 VAL B 186 REMARK 465 GLY B 187 REMARK 465 GLN B 188 REMARK 465 ARG B 189 REMARK 465 ASP B 190 REMARK 465 GLY B 191 REMARK 465 GLY B 192 REMARK 465 LEU B 193 REMARK 465 PRO B 194 REMARK 465 PRO B 195 REMARK 465 ASP B 196 REMARK 465 SER B 197 REMARK 465 VAL B 198 REMARK 465 VAL B 199 REMARK 465 GLU B 200 REMARK 465 ARG B 201 REMARK 465 SER B 270 REMARK 465 ARG B 271 REMARK 465 GLU B 272 REMARK 465 LYS B 273 REMARK 465 PHE B 274 REMARK 465 GLY B 275 REMARK 465 MET B 276 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 -110.00 56.95 REMARK 500 LEU A 80 30.36 -95.88 REMARK 500 CYS A 232 -38.62 -39.54 REMARK 500 HIS A 296 -82.91 79.78 REMARK 500 ASP A 347 179.83 71.55 REMARK 500 ASN A 352 -61.46 -158.16 REMARK 500 ALA A 355 47.06 -147.32 REMARK 500 THR A 387 -82.94 -120.30 REMARK 500 LEU A 415 1.23 -69.97 REMARK 500 ASP A 426 82.94 -159.92 REMARK 500 ASP B 58 -109.10 64.38 REMARK 500 LEU B 80 34.20 -98.77 REMARK 500 ASN B 109 59.21 -119.71 REMARK 500 LEU B 112 -69.93 -19.08 REMARK 500 TRP B 293 135.59 -170.41 REMARK 500 HIS B 296 -80.55 74.75 REMARK 500 ASP B 347 171.68 69.66 REMARK 500 ASN B 352 -61.69 -153.44 REMARK 500 ALA B 355 43.59 -140.05 REMARK 500 THR B 387 -85.35 -113.84 REMARK 500 ASN B 395 47.92 73.09 REMARK 500 ASP B 426 77.86 -156.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 480 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HIS A 95 NE2 106.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 480 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 93 NE2 REMARK 620 2 HIS B 95 NE2 100.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 480 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 480 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9236E RELATED DB: TARGETDB DBREF 3H4U A 1 479 PDB 3H4U 3H4U 1 479 DBREF 3H4U B 1 479 PDB 3H4U 3H4U 1 479 SEQRES 1 A 479 MET GLY ALA ASP ARG ARG GLY GLU ARG MET ASN LEU GLU SEQRES 2 A 479 GLN HIS ALA GLY ALA ARG ALA PRO ASN THR SER SER SER SEQRES 3 A 479 ARG PRO LYS THR LEU LEU VAL LYS HIS ALA ASP VAL LEU SEQRES 4 A 479 VAL THR MET ASP ASP THR ARG ARG GLU LEU ARG ASP ALA SEQRES 5 A 479 GLY LEU TYR ILE GLU ASP ASN ARG ILE VAL ALA VAL GLY SEQRES 6 A 479 PRO SER ALA GLU LEU PRO GLU THR ALA ASP GLU VAL LEU SEQRES 7 A 479 ASP LEU ARG GLY HIS LEU VAL ILE PRO GLY LEU VAL ASN SEQRES 8 A 479 THR HIS HIS HIS MET TYR GLN SER LEU THR ARG ALA VAL SEQRES 9 A 479 PRO ALA ALA GLN ASN ALA GLU LEU PHE GLY TRP LEU THR SEQRES 10 A 479 ASN LEU TYR LYS ILE TRP ALA HIS LEU THR PRO GLU MET SEQRES 11 A 479 ILE GLU VAL SER THR LEU THR ALA MET ALA GLU LEU LEU SEQRES 12 A 479 GLN SER GLY CYS THR THR SER SER ASP HIS LEU TYR ILE SEQRES 13 A 479 TYR PRO ASN GLY SER ARG LEU ASP ASP SER ILE GLY ALA SEQRES 14 A 479 ALA GLN ARG ILE GLY MET ARG PHE HIS ALA SER ARG GLY SEQRES 15 A 479 ALA MET SER VAL GLY GLN ARG ASP GLY GLY LEU PRO PRO SEQRES 16 A 479 ASP SER VAL VAL GLU ARG GLU PRO ASP ILE LEU ARG ASP SEQRES 17 A 479 THR GLN ARG LEU ILE GLU THR TYR HIS ASP GLU GLY ARG SEQRES 18 A 479 TYR ALA MET LEU ARG VAL VAL VAL ALA PRO CYS SER PRO SEQRES 19 A 479 PHE SER VAL SER ARG ASP LEU MET ARG ASP ALA ALA VAL SEQRES 20 A 479 LEU ALA ARG GLU TYR GLY VAL SER LEU HIS THR HIS LEU SEQRES 21 A 479 ALA GLU ASN VAL ASN ASP ILE ALA TYR SER ARG GLU LYS SEQRES 22 A 479 PHE GLY MET THR PRO ALA GLU TYR ALA GLU ASP LEU GLY SEQRES 23 A 479 TRP VAL GLY HIS ASP VAL TRP HIS ALA HIS CYS VAL GLN SEQRES 24 A 479 LEU ASP ASP ALA GLY ILE GLY LEU PHE ALA ARG THR GLY SEQRES 25 A 479 THR GLY VAL ALA HIS CYS PRO CYS SER ASN MET ARG LEU SEQRES 26 A 479 ALA SER GLY ILE ALA PRO VAL LYS LYS MET ARG LEU ALA SEQRES 27 A 479 GLY VAL PRO VAL GLY LEU GLY VAL ASP GLY SER ALA SER SEQRES 28 A 479 ASN ASP GLY ALA GLN MET VAL ALA GLU VAL ARG GLN ALA SEQRES 29 A 479 LEU LEU LEU GLN ARG VAL GLY PHE GLY PRO ASP ALA MET SEQRES 30 A 479 THR ALA ARG GLU ALA LEU GLU ILE ALA THR LEU GLY GLY SEQRES 31 A 479 ALA LYS VAL LEU ASN ARG ASP ASP ILE GLY ALA LEU LYS SEQRES 32 A 479 PRO GLY MET ALA ALA ASP PHE ALA ALA PHE ASP LEU ARG SEQRES 33 A 479 GLN PRO LEU PHE ALA GLY ALA LEU HIS ASP PRO VAL ALA SEQRES 34 A 479 ALA LEU VAL PHE CYS ALA PRO SER GLN THR ALA TYR THR SEQRES 35 A 479 VAL VAL ASN GLY LYS VAL VAL VAL ARG GLU GLY ARG LEU SEQRES 36 A 479 ALA THR LEU ASP LEU PRO PRO VAL ILE GLU ARG HIS ASN SEQRES 37 A 479 ALA LEU ALA HIS ALA LEU VAL GLU ALA ALA ARG SEQRES 1 B 479 MET GLY ALA ASP ARG ARG GLY GLU ARG MET ASN LEU GLU SEQRES 2 B 479 GLN HIS ALA GLY ALA ARG ALA PRO ASN THR SER SER SER SEQRES 3 B 479 ARG PRO LYS THR LEU LEU VAL LYS HIS ALA ASP VAL LEU SEQRES 4 B 479 VAL THR MET ASP ASP THR ARG ARG GLU LEU ARG ASP ALA SEQRES 5 B 479 GLY LEU TYR ILE GLU ASP ASN ARG ILE VAL ALA VAL GLY SEQRES 6 B 479 PRO SER ALA GLU LEU PRO GLU THR ALA ASP GLU VAL LEU SEQRES 7 B 479 ASP LEU ARG GLY HIS LEU VAL ILE PRO GLY LEU VAL ASN SEQRES 8 B 479 THR HIS HIS HIS MET TYR GLN SER LEU THR ARG ALA VAL SEQRES 9 B 479 PRO ALA ALA GLN ASN ALA GLU LEU PHE GLY TRP LEU THR SEQRES 10 B 479 ASN LEU TYR LYS ILE TRP ALA HIS LEU THR PRO GLU MET SEQRES 11 B 479 ILE GLU VAL SER THR LEU THR ALA MET ALA GLU LEU LEU SEQRES 12 B 479 GLN SER GLY CYS THR THR SER SER ASP HIS LEU TYR ILE SEQRES 13 B 479 TYR PRO ASN GLY SER ARG LEU ASP ASP SER ILE GLY ALA SEQRES 14 B 479 ALA GLN ARG ILE GLY MET ARG PHE HIS ALA SER ARG GLY SEQRES 15 B 479 ALA MET SER VAL GLY GLN ARG ASP GLY GLY LEU PRO PRO SEQRES 16 B 479 ASP SER VAL VAL GLU ARG GLU PRO ASP ILE LEU ARG ASP SEQRES 17 B 479 THR GLN ARG LEU ILE GLU THR TYR HIS ASP GLU GLY ARG SEQRES 18 B 479 TYR ALA MET LEU ARG VAL VAL VAL ALA PRO CYS SER PRO SEQRES 19 B 479 PHE SER VAL SER ARG ASP LEU MET ARG ASP ALA ALA VAL SEQRES 20 B 479 LEU ALA ARG GLU TYR GLY VAL SER LEU HIS THR HIS LEU SEQRES 21 B 479 ALA GLU ASN VAL ASN ASP ILE ALA TYR SER ARG GLU LYS SEQRES 22 B 479 PHE GLY MET THR PRO ALA GLU TYR ALA GLU ASP LEU GLY SEQRES 23 B 479 TRP VAL GLY HIS ASP VAL TRP HIS ALA HIS CYS VAL GLN SEQRES 24 B 479 LEU ASP ASP ALA GLY ILE GLY LEU PHE ALA ARG THR GLY SEQRES 25 B 479 THR GLY VAL ALA HIS CYS PRO CYS SER ASN MET ARG LEU SEQRES 26 B 479 ALA SER GLY ILE ALA PRO VAL LYS LYS MET ARG LEU ALA SEQRES 27 B 479 GLY VAL PRO VAL GLY LEU GLY VAL ASP GLY SER ALA SER SEQRES 28 B 479 ASN ASP GLY ALA GLN MET VAL ALA GLU VAL ARG GLN ALA SEQRES 29 B 479 LEU LEU LEU GLN ARG VAL GLY PHE GLY PRO ASP ALA MET SEQRES 30 B 479 THR ALA ARG GLU ALA LEU GLU ILE ALA THR LEU GLY GLY SEQRES 31 B 479 ALA LYS VAL LEU ASN ARG ASP ASP ILE GLY ALA LEU LYS SEQRES 32 B 479 PRO GLY MET ALA ALA ASP PHE ALA ALA PHE ASP LEU ARG SEQRES 33 B 479 GLN PRO LEU PHE ALA GLY ALA LEU HIS ASP PRO VAL ALA SEQRES 34 B 479 ALA LEU VAL PHE CYS ALA PRO SER GLN THR ALA TYR THR SEQRES 35 B 479 VAL VAL ASN GLY LYS VAL VAL VAL ARG GLU GLY ARG LEU SEQRES 36 B 479 ALA THR LEU ASP LEU PRO PRO VAL ILE GLU ARG HIS ASN SEQRES 37 B 479 ALA LEU ALA HIS ALA LEU VAL GLU ALA ALA ARG HET ZN A 480 1 HET ZN B 480 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *128(H2 O) HELIX 1 1 ALA A 68 LEU A 70 5 3 HELIX 2 2 HIS A 95 THR A 101 5 7 HELIX 3 3 GLU A 111 ALA A 124 1 14 HELIX 4 4 THR A 127 GLN A 144 1 18 HELIX 5 5 ARG A 162 GLY A 174 1 13 HELIX 6 6 GLU A 202 HIS A 217 1 16 HELIX 7 7 SER A 238 GLY A 253 1 16 HELIX 8 8 ASN A 263 TYR A 269 1 7 HELIX 9 9 THR A 277 LEU A 285 1 9 HELIX 10 10 ASP A 301 GLY A 312 1 12 HELIX 11 11 CYS A 318 LEU A 325 1 8 HELIX 12 12 PRO A 331 ALA A 338 1 8 HELIX 13 13 GLN A 356 GLY A 373 1 18 HELIX 14 14 THR A 378 ALA A 386 1 9 HELIX 15 15 THR A 387 ASN A 395 1 9 HELIX 16 16 GLN A 417 ALA A 421 5 5 HELIX 17 17 ASP A 426 CYS A 434 1 9 HELIX 18 18 ASP A 459 ARG A 479 1 21 HELIX 19 19 ALA B 68 LEU B 70 5 3 HELIX 20 20 HIS B 95 THR B 101 5 7 HELIX 21 21 VAL B 104 ASN B 109 1 6 HELIX 22 22 GLU B 111 ALA B 124 1 14 HELIX 23 23 THR B 127 GLN B 144 1 18 HELIX 24 24 ARG B 162 GLY B 174 1 13 HELIX 25 25 GLU B 202 HIS B 217 1 16 HELIX 26 26 SER B 238 GLY B 253 1 16 HELIX 27 27 ASN B 263 ALA B 268 1 6 HELIX 28 28 THR B 277 LEU B 285 1 9 HELIX 29 29 ASP B 301 GLY B 312 1 12 HELIX 30 30 CYS B 318 LEU B 325 1 8 HELIX 31 31 PRO B 331 GLY B 339 1 9 HELIX 32 32 GLN B 356 GLY B 373 1 18 HELIX 33 33 THR B 378 THR B 387 1 10 HELIX 34 34 THR B 387 ASN B 395 1 9 HELIX 35 35 GLN B 417 ALA B 421 5 5 HELIX 36 36 ASP B 426 CYS B 434 1 9 HELIX 37 37 ASP B 459 ARG B 479 1 21 SHEET 1 A 4 ARG A 60 PRO A 66 0 SHEET 2 A 4 GLU A 48 GLU A 57 -1 N TYR A 55 O ALA A 63 SHEET 3 A 4 THR A 30 VAL A 40 -1 N LEU A 31 O ILE A 56 SHEET 4 A 4 GLU A 76 ASP A 79 1 O LEU A 78 N LEU A 32 SHEET 1 B 8 ARG A 60 PRO A 66 0 SHEET 2 B 8 GLU A 48 GLU A 57 -1 N TYR A 55 O ALA A 63 SHEET 3 B 8 THR A 30 VAL A 40 -1 N LEU A 31 O ILE A 56 SHEET 4 B 8 HIS A 83 PRO A 87 1 O VAL A 85 N VAL A 38 SHEET 5 B 8 PHE A 410 ASP A 414 -1 O PHE A 413 N LEU A 84 SHEET 6 B 8 TYR A 441 VAL A 444 -1 O VAL A 443 N PHE A 410 SHEET 7 B 8 LYS A 447 ARG A 451 -1 O LYS A 447 N VAL A 444 SHEET 8 B 8 ARG A 454 LEU A 455 -1 O ARG A 454 N ARG A 451 SHEET 1 C 9 LEU A 89 ASN A 91 0 SHEET 2 C 9 CYS A 147 SER A 151 1 O THR A 149 N ASN A 91 SHEET 3 C 9 ARG A 176 ALA A 183 1 O HIS A 178 N SER A 150 SHEET 4 C 9 LEU A 225 PRO A 231 1 O VAL A 228 N ARG A 181 SHEET 5 C 9 SER A 255 LEU A 260 1 O SER A 255 N VAL A 229 SHEET 6 C 9 VAL A 292 HIS A 296 1 O ALA A 295 N THR A 258 SHEET 7 C 9 GLY A 314 HIS A 317 1 O GLY A 314 N HIS A 294 SHEET 8 C 9 VAL A 342 LEU A 344 1 O GLY A 343 N HIS A 317 SHEET 9 C 9 LEU A 89 ASN A 91 1 O VAL A 90 N LEU A 344 SHEET 1 D 4 ARG B 60 PRO B 66 0 SHEET 2 D 4 GLU B 48 GLU B 57 -1 N TYR B 55 O VAL B 62 SHEET 3 D 4 THR B 30 VAL B 40 -1 N LEU B 39 O LEU B 49 SHEET 4 D 4 GLU B 76 ASP B 79 1 O LEU B 78 N LEU B 32 SHEET 1 E 8 ARG B 60 PRO B 66 0 SHEET 2 E 8 GLU B 48 GLU B 57 -1 N TYR B 55 O VAL B 62 SHEET 3 E 8 THR B 30 VAL B 40 -1 N LEU B 39 O LEU B 49 SHEET 4 E 8 HIS B 83 PRO B 87 1 O VAL B 85 N VAL B 38 SHEET 5 E 8 PHE B 410 ASP B 414 -1 O ALA B 411 N ILE B 86 SHEET 6 E 8 TYR B 441 VAL B 444 -1 O VAL B 443 N PHE B 410 SHEET 7 E 8 LYS B 447 ARG B 451 -1 O LYS B 447 N VAL B 444 SHEET 8 E 8 ARG B 454 LEU B 455 -1 O ARG B 454 N ARG B 451 SHEET 1 F 9 LEU B 89 ASN B 91 0 SHEET 2 F 9 CYS B 147 SER B 151 1 O THR B 149 N ASN B 91 SHEET 3 F 9 ARG B 176 ALA B 183 1 O ARG B 176 N SER B 150 SHEET 4 F 9 LEU B 225 PRO B 231 1 O VAL B 228 N ARG B 181 SHEET 5 F 9 SER B 255 LEU B 260 1 O SER B 255 N VAL B 229 SHEET 6 F 9 VAL B 292 HIS B 296 1 O ALA B 295 N THR B 258 SHEET 7 F 9 GLY B 314 HIS B 317 1 O GLY B 314 N HIS B 294 SHEET 8 F 9 VAL B 342 LEU B 344 1 O GLY B 343 N VAL B 315 SHEET 9 F 9 LEU B 89 ASN B 91 1 N VAL B 90 O LEU B 344 LINK NE2 HIS A 93 ZN ZN A 480 1555 1555 2.12 LINK NE2 HIS A 95 ZN ZN A 480 1555 1555 2.14 LINK NE2 HIS B 93 ZN ZN B 480 1555 1555 2.14 LINK NE2 HIS B 95 ZN ZN B 480 1555 1555 2.14 CISPEP 1 ASN A 352 ASP A 353 0 -0.65 CISPEP 2 ASN B 352 ASP B 353 0 -0.68 SITE 1 AC1 4 HIS A 93 HIS A 95 HIS A 259 ASP A 347 SITE 1 AC2 4 HIS B 93 HIS B 95 HIS B 259 ASP B 347 CRYST1 83.304 83.304 229.125 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012004 0.006931 0.000000 0.00000 SCALE2 0.000000 0.013861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004364 0.00000