HEADER LYASE 22-APR-09 3H5E TITLE LEUD_1-156 SMALL SUBUNIT OF ISOPROPYLMALATE ISOMERASE (RV2987C) FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LEUD, RESIDUES 1-156; COMPND 5 SYNONYM: ISOPROPYLMALATE ISOMERASE SMALL SUBUNIT, ALPHA-IPM COMPND 6 ISOMERASE, IPMI; COMPND 7 EC: 4.2.1.33; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2987C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS LEUCINE BIOSYNTHESIS, ISOPROPYLMALATE ISOMERASE, LEUD, KEYWDS 2 M.TUBERCULOSIS, AMINO-ACID BIOSYNTHESIS, BRANCHED-CHAIN AMINO ACID KEYWDS 3 BIOSYNTHESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MANIKANDAN,A.GEERLOF,M.S.WEISS REVDAT 5 20-MAR-24 3H5E 1 SEQADV REVDAT 4 13-JUL-11 3H5E 1 VERSN REVDAT 3 08-DEC-10 3H5E 1 JRNL REVDAT 2 27-OCT-10 3H5E 1 JRNL REVDAT 1 07-APR-10 3H5E 0 JRNL AUTH K.MANIKANDAN,A.GEERLOF,A.V.ZOZULYA,D.I.SVERGUN,M.S.WEISS JRNL TITL STRUCTURAL STUDIES ON THE ENZYME COMPLEX ISOPROPYLMALATE JRNL TITL 2 ISOMERASE (LEUCD) FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF PROTEINS V. 79 35 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 20938981 JRNL DOI 10.1002/PROT.22856 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.MANIKANDAN,A.GEERLOF,L.SCHULDT,C.MUELLER-DIECKMANN, REMARK 1 AUTH 2 M.S.WEISS REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY DIFFRACTION ANALYSIS OF THE SMALL SUBUNIT REMARK 1 TITL 3 OF ISOPROPYLMALATE ISOMERASE (RV2987C) FROM MYCOBACTERIUM REMARK 1 TITL 4 TUBERCULOSIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 136 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19194004 REMARK 1 DOI 10.1107/S1744309108042516 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 35075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1132 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 52.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58000 REMARK 3 B22 (A**2) : 1.58000 REMARK 3 B33 (A**2) : -2.36000 REMARK 3 B12 (A**2) : 0.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.633 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2432 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3309 ; 1.438 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 5.587 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;31.884 ;22.589 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;16.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1880 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1522 ; 0.866 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2448 ; 1.607 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 910 ; 3.768 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 857 ; 5.910 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7384 48.2117 24.6643 REMARK 3 T TENSOR REMARK 3 T11: 0.0587 T22: -0.2806 REMARK 3 T33: -0.1177 T12: -0.0727 REMARK 3 T13: 0.0849 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.2889 L22: 2.2082 REMARK 3 L33: 4.6709 L12: 1.4060 REMARK 3 L13: -1.8355 L23: -1.1541 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: -0.0645 S13: 0.1426 REMARK 3 S21: -0.2944 S22: 0.0812 S23: -0.1924 REMARK 3 S31: -0.4924 S32: -0.1103 S33: -0.2180 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 155 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7894 72.7283 8.0736 REMARK 3 T TENSOR REMARK 3 T11: -0.0170 T22: -0.2186 REMARK 3 T33: -0.0794 T12: -0.0422 REMARK 3 T13: 0.0026 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 1.6396 L22: 4.8941 REMARK 3 L33: 5.3819 L12: 0.2938 REMARK 3 L13: 1.5475 L23: 3.0341 REMARK 3 S TENSOR REMARK 3 S11: 0.2599 S12: 0.2928 S13: -0.2434 REMARK 3 S21: -0.5356 S22: 0.0118 S23: -0.1419 REMARK 3 S31: -0.2358 S32: 0.1917 S33: -0.2717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0724 REMARK 200 MONOCHROMATOR : CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM CITRATE TRIBASIC, 0.1M REMARK 280 SODIUM CACODYLATE PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 279.88000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.94000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 209.91000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.97000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 349.85000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 279.88000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 139.94000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.97000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 209.91000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 349.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS THE STRUCTURE REPRESENTS ONLY A PART OF A SUBUNIT OF AN REMARK 300 ENZYME COMPLEX, THE ASSEMBLIES DESCRIBED IN REMARK350 IS NOT REMARK 300 RELEVANT TO THE REAL BIOLOGICAL ASSEMBLIES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 1A REMARK 465 GLU A 2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 SER B 1A REMARK 465 GLU B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 156 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 3 CB REMARK 480 HIS A 5 CG ND1 CD2 CE1 NE2 REMARK 480 ASP A 156 CG OD1 OD2 REMARK 480 SER B 75 CB OG REMARK 480 LYS B 107 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 3 CA ALA A 3 CB -0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 5 CA - CB - CG ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 5 -52.70 -143.12 REMARK 500 SER A 75 70.25 12.46 REMARK 500 SER A 76 170.33 -38.85 REMARK 500 ALA A 147 -126.94 49.00 REMARK 500 HIS B 5 -44.53 -132.26 REMARK 500 THR B 36 -83.34 -116.65 REMARK 500 ARG B 77 -99.26 -98.11 REMARK 500 GLU B 78 -44.72 169.29 REMARK 500 ALA B 147 -121.20 45.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H5H RELATED DB: PDB REMARK 900 THE SAME PROTEIN, RESIDUES 1-186 REMARK 900 RELATED ID: 3H5J RELATED DB: PDB REMARK 900 THE SAME PROTEIN, RESIDUES 1-168 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SER 1A WAS INTRODUCED WHILE CLONING. ILE 122 OCCURRED DURING REMARK 999 PCR. DBREF 3H5E A 1 156 UNP P65277 LEUD_MYCTU 1 156 DBREF 3H5E B 1 156 UNP P65277 LEUD_MYCTU 1 156 SEQADV 3H5E GLY A -1 UNP P65277 EXPRESSION TAG SEQADV 3H5E ALA A 0 UNP P65277 EXPRESSION TAG SEQADV 3H5E SER A 1A UNP P65277 CLONING ARTIFACT SEQADV 3H5E ILE A 122 UNP P65277 LEU 122 SEE REMARK 999 SEQADV 3H5E GLY B -1 UNP P65277 EXPRESSION TAG SEQADV 3H5E ALA B 0 UNP P65277 EXPRESSION TAG SEQADV 3H5E SER B 1A UNP P65277 CLONING ARTIFACT SEQADV 3H5E ILE B 122 UNP P65277 LEU 122 SEE REMARK 999 SEQRES 1 A 159 GLY ALA MET SER GLU ALA PHE HIS THR HIS SER GLY ILE SEQRES 2 A 159 GLY VAL PRO LEU ARG ARG SER ASN VAL ASP THR ASP GLN SEQRES 3 A 159 ILE ILE PRO ALA VAL PHE LEU LYS ARG VAL THR ARG THR SEQRES 4 A 159 GLY PHE GLU ASP GLY LEU PHE ALA GLY TRP ARG SER ASP SEQRES 5 A 159 PRO ALA PHE VAL LEU ASN LEU SER PRO PHE ASP ARG GLY SEQRES 6 A 159 SER VAL LEU VAL ALA GLY PRO ASP PHE GLY THR GLY SER SEQRES 7 A 159 SER ARG GLU HIS ALA VAL TRP ALA LEU MET ASP TYR GLY SEQRES 8 A 159 PHE ARG VAL VAL ILE SER SER ARG PHE GLY ASP ILE PHE SEQRES 9 A 159 ARG GLY ASN ALA GLY LYS ALA GLY LEU LEU ALA ALA GLU SEQRES 10 A 159 VAL ALA GLN ASP ASP VAL GLU ILE LEU TRP LYS LEU ILE SEQRES 11 A 159 GLU GLN SER PRO GLY LEU GLU ILE THR ALA ASN LEU GLN SEQRES 12 A 159 ASP ARG ILE ILE THR ALA ALA THR VAL VAL LEU PRO PHE SEQRES 13 A 159 LYS ILE ASP SEQRES 1 B 159 GLY ALA MET SER GLU ALA PHE HIS THR HIS SER GLY ILE SEQRES 2 B 159 GLY VAL PRO LEU ARG ARG SER ASN VAL ASP THR ASP GLN SEQRES 3 B 159 ILE ILE PRO ALA VAL PHE LEU LYS ARG VAL THR ARG THR SEQRES 4 B 159 GLY PHE GLU ASP GLY LEU PHE ALA GLY TRP ARG SER ASP SEQRES 5 B 159 PRO ALA PHE VAL LEU ASN LEU SER PRO PHE ASP ARG GLY SEQRES 6 B 159 SER VAL LEU VAL ALA GLY PRO ASP PHE GLY THR GLY SER SEQRES 7 B 159 SER ARG GLU HIS ALA VAL TRP ALA LEU MET ASP TYR GLY SEQRES 8 B 159 PHE ARG VAL VAL ILE SER SER ARG PHE GLY ASP ILE PHE SEQRES 9 B 159 ARG GLY ASN ALA GLY LYS ALA GLY LEU LEU ALA ALA GLU SEQRES 10 B 159 VAL ALA GLN ASP ASP VAL GLU ILE LEU TRP LYS LEU ILE SEQRES 11 B 159 GLU GLN SER PRO GLY LEU GLU ILE THR ALA ASN LEU GLN SEQRES 12 B 159 ASP ARG ILE ILE THR ALA ALA THR VAL VAL LEU PRO PHE SEQRES 13 B 159 LYS ILE ASP FORMUL 3 HOH *135(H2 O) HELIX 1 1 ASP A 20 ILE A 25 1 6 HELIX 2 2 PRO A 26 ARG A 32 5 7 HELIX 3 3 PHE A 43 SER A 48 1 6 HELIX 4 4 PHE A 52 LEU A 56 5 5 HELIX 5 5 PRO A 58 GLY A 62 5 5 HELIX 6 6 ARG A 77 GLY A 88 1 12 HELIX 7 7 GLY A 98 GLY A 109 1 12 HELIX 8 8 ALA A 116 SER A 130 1 15 HELIX 9 9 ASP B 20 ILE B 25 1 6 HELIX 10 10 PRO B 26 ARG B 32 5 7 HELIX 11 11 PHE B 38 LEU B 42 5 5 HELIX 12 12 GLY B 45 ASP B 49 5 5 HELIX 13 13 PHE B 52 LEU B 56 5 5 HELIX 14 14 PRO B 58 GLY B 62 5 5 HELIX 15 15 GLU B 78 GLY B 88 1 11 HELIX 16 16 GLY B 98 GLY B 109 1 12 HELIX 17 17 ALA B 116 SER B 130 1 15 SHEET 1 A 7 LEU A 111 GLU A 114 0 SHEET 2 A 7 VAL A 91 SER A 94 1 N VAL A 92 O LEU A 111 SHEET 3 A 7 VAL A 64 ALA A 67 1 N ALA A 67 O ILE A 93 SHEET 4 A 7 THR A 6 LEU A 14 1 N VAL A 12 O VAL A 66 SHEET 5 A 7 GLU A 134 ASN A 138 -1 O ILE A 135 N GLY A 9 SHEET 6 A 7 ILE A 143 ALA A 146 -1 O ILE A 143 N ASN A 138 SHEET 7 A 7 VAL A 149 PRO A 152 -1 O LEU A 151 N ILE A 144 SHEET 1 B 7 LEU B 111 GLU B 114 0 SHEET 2 B 7 VAL B 91 SER B 94 1 N VAL B 92 O LEU B 111 SHEET 3 B 7 VAL B 64 ALA B 67 1 N ALA B 67 O ILE B 93 SHEET 4 B 7 THR B 6 LEU B 14 1 N VAL B 12 O VAL B 66 SHEET 5 B 7 GLU B 134 ASN B 138 -1 O ILE B 135 N GLY B 9 SHEET 6 B 7 ILE B 143 ALA B 146 -1 O THR B 145 N THR B 136 SHEET 7 B 7 VAL B 149 PRO B 152 -1 O LEU B 151 N ILE B 144 CISPEP 1 SER A 57 PRO A 58 0 5.84 CISPEP 2 SER B 57 PRO B 58 0 3.32 CISPEP 3 GLY B 74 SER B 75 0 14.33 CRYST1 64.620 64.620 419.820 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015475 0.008935 0.000000 0.00000 SCALE2 0.000000 0.017869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002382 0.00000