HEADER LYASE 22-APR-09 3H5H TITLE LEUD_1-186 SMALL SUBUNIT OF ISOPROPYLMALATE ISOMERASE (RV2987C) FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LEUD, RESIDUES 1-186; COMPND 5 SYNONYM: ISOPROPYLMALATE ISOMERASE SMALL SUBUNIT, ALPHA-IPM COMPND 6 ISOMERASE, IPMI; COMPND 7 EC: 4.2.1.33; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2987C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS LEUCINE BIOSYNTHESIS, ISOPROPYLMALATE ISOMERASE, LEUD, KEYWDS 2 M.TUBERCULOSIS, AMINO-ACID BIOSYNTHESIS, BRANCHED-CHAIN AMINO ACID KEYWDS 3 BIOSYNTHESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MANIKANDAN,A.GEERLOF,M.S.WEISS REVDAT 4 01-NOV-23 3H5H 1 SEQADV REVDAT 3 08-DEC-10 3H5H 1 JRNL REVDAT 2 27-OCT-10 3H5H 1 JRNL REVDAT 1 07-APR-10 3H5H 0 JRNL AUTH K.MANIKANDAN,A.GEERLOF,A.V.ZOZULYA,D.I.SVERGUN,M.S.WEISS JRNL TITL STRUCTURAL STUDIES ON THE ENZYME COMPLEX ISOPROPYLMALATE JRNL TITL 2 ISOMERASE (LEUCD) FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF PROTEINS V. 79 35 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 20938981 JRNL DOI 10.1002/PROT.22856 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.MANIKANDAN,A.GEERLOF,L.SCHULDT,C.MUELLER-DIECKMANN, REMARK 1 AUTH 2 M.S.WEISS REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY DIFFRACTION ANALYSIS OF THE SMALL SUBUNIT REMARK 1 TITL 3 OF ISOPROPYLMALATE ISOMERASE (RV2987C) FROM MYCOBACTERIUM REMARK 1 TITL 4 TUBERCULOSIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 136 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19194004 REMARK 1 DOI 10.1107/S1744309108042516 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 10185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 708 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2593 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -1.04000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.295 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.290 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.843 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2647 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3597 ; 1.074 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 5.076 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;37.411 ;22.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;17.950 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2037 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1655 ; 0.553 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2651 ; 1.103 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 992 ; 2.398 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 946 ; 4.059 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 29 2 REMARK 3 1 B 5 B 29 2 REMARK 3 2 A 35 A 167 2 REMARK 3 2 B 35 B 167 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 632 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 B (A): 587 ; 0.04 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 632 ; 0.25 ; 1.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 587 ; 0.41 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 51.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3H5E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACL, 0.1M HEPES PH 7.0, 1.2M REMARK 280 AMMONIUM SULPHATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.24000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.24000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS THE STRUCTURE REPRESENTS ONLY A PART OF A SUBUNIT OF AN REMARK 300 ENZYME COMPLEX, THE ASSEMBLIES DESCRIBED IN REMARK350 IS NOT REMARK 300 RELEVANT TO THE REAL BIOLOGICAL ASSEMBLIES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 187 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 1A REMARK 465 GLU A 2 REMARK 465 ASP A 169 REMARK 465 ILE A 170 REMARK 465 ALA A 171 REMARK 465 LEU A 172 REMARK 465 THR A 173 REMARK 465 LEU A 174 REMARK 465 ARG A 175 REMARK 465 LYS A 176 REMARK 465 LEU A 177 REMARK 465 ASP A 178 REMARK 465 GLU A 179 REMARK 465 ILE A 180 REMARK 465 GLU A 181 REMARK 465 ALA A 182 REMARK 465 PHE A 183 REMARK 465 GLU A 184 REMARK 465 GLY A 185 REMARK 465 ALA A 186 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 169 REMARK 465 ILE B 170 REMARK 465 ALA B 171 REMARK 465 LEU B 172 REMARK 465 THR B 173 REMARK 465 LEU B 174 REMARK 465 ARG B 175 REMARK 465 LYS B 176 REMARK 465 LEU B 177 REMARK 465 ASP B 178 REMARK 465 GLU B 179 REMARK 465 ILE B 180 REMARK 465 GLU B 181 REMARK 465 ALA B 182 REMARK 465 PHE B 183 REMARK 465 GLU B 184 REMARK 465 GLY B 185 REMARK 465 ALA B 186 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 480 ASP B 168 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 4 94.44 136.08 REMARK 500 ARG A 32 -35.97 109.33 REMARK 500 ALA A 147 -129.36 49.96 REMARK 500 LEU A 167 46.73 -86.27 REMARK 500 PHE B 4 -45.81 127.70 REMARK 500 ARG B 32 -95.38 -71.78 REMARK 500 VAL B 33 -65.95 -168.18 REMARK 500 THR B 34 152.86 35.99 REMARK 500 ALA B 147 -126.36 51.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H5E RELATED DB: PDB REMARK 900 THE SAME PROTEIN, RESIDUES 1-156 REMARK 900 RELATED ID: 3H5J RELATED DB: PDB REMARK 900 THE SAME PROTEIN, RESIDUES 1-168 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SER 1A WAS INTRODUCED WHILE CLONING. DBREF 3H5H A 1 186 UNP P65277 LEUD_MYCTU 1 186 DBREF 3H5H B 1 186 UNP P65277 LEUD_MYCTU 1 186 SEQADV 3H5H GLY A -1 UNP P65277 EXPRESSION TAG SEQADV 3H5H ALA A 0 UNP P65277 EXPRESSION TAG SEQADV 3H5H SER A 1A UNP P65277 CLONING ARTIFACT SEQADV 3H5H GLY B -1 UNP P65277 EXPRESSION TAG SEQADV 3H5H ALA B 0 UNP P65277 EXPRESSION TAG SEQADV 3H5H SER B 1A UNP P65277 CLONING ARTIFACT SEQRES 1 A 189 GLY ALA MET SER GLU ALA PHE HIS THR HIS SER GLY ILE SEQRES 2 A 189 GLY VAL PRO LEU ARG ARG SER ASN VAL ASP THR ASP GLN SEQRES 3 A 189 ILE ILE PRO ALA VAL PHE LEU LYS ARG VAL THR ARG THR SEQRES 4 A 189 GLY PHE GLU ASP GLY LEU PHE ALA GLY TRP ARG SER ASP SEQRES 5 A 189 PRO ALA PHE VAL LEU ASN LEU SER PRO PHE ASP ARG GLY SEQRES 6 A 189 SER VAL LEU VAL ALA GLY PRO ASP PHE GLY THR GLY SER SEQRES 7 A 189 SER ARG GLU HIS ALA VAL TRP ALA LEU MET ASP TYR GLY SEQRES 8 A 189 PHE ARG VAL VAL ILE SER SER ARG PHE GLY ASP ILE PHE SEQRES 9 A 189 ARG GLY ASN ALA GLY LYS ALA GLY LEU LEU ALA ALA GLU SEQRES 10 A 189 VAL ALA GLN ASP ASP VAL GLU LEU LEU TRP LYS LEU ILE SEQRES 11 A 189 GLU GLN SER PRO GLY LEU GLU ILE THR ALA ASN LEU GLN SEQRES 12 A 189 ASP ARG ILE ILE THR ALA ALA THR VAL VAL LEU PRO PHE SEQRES 13 A 189 LYS ILE ASP ASP HIS SER ALA TRP ARG LEU LEU GLU GLY SEQRES 14 A 189 LEU ASP ASP ILE ALA LEU THR LEU ARG LYS LEU ASP GLU SEQRES 15 A 189 ILE GLU ALA PHE GLU GLY ALA SEQRES 1 B 189 GLY ALA MET SER GLU ALA PHE HIS THR HIS SER GLY ILE SEQRES 2 B 189 GLY VAL PRO LEU ARG ARG SER ASN VAL ASP THR ASP GLN SEQRES 3 B 189 ILE ILE PRO ALA VAL PHE LEU LYS ARG VAL THR ARG THR SEQRES 4 B 189 GLY PHE GLU ASP GLY LEU PHE ALA GLY TRP ARG SER ASP SEQRES 5 B 189 PRO ALA PHE VAL LEU ASN LEU SER PRO PHE ASP ARG GLY SEQRES 6 B 189 SER VAL LEU VAL ALA GLY PRO ASP PHE GLY THR GLY SER SEQRES 7 B 189 SER ARG GLU HIS ALA VAL TRP ALA LEU MET ASP TYR GLY SEQRES 8 B 189 PHE ARG VAL VAL ILE SER SER ARG PHE GLY ASP ILE PHE SEQRES 9 B 189 ARG GLY ASN ALA GLY LYS ALA GLY LEU LEU ALA ALA GLU SEQRES 10 B 189 VAL ALA GLN ASP ASP VAL GLU LEU LEU TRP LYS LEU ILE SEQRES 11 B 189 GLU GLN SER PRO GLY LEU GLU ILE THR ALA ASN LEU GLN SEQRES 12 B 189 ASP ARG ILE ILE THR ALA ALA THR VAL VAL LEU PRO PHE SEQRES 13 B 189 LYS ILE ASP ASP HIS SER ALA TRP ARG LEU LEU GLU GLY SEQRES 14 B 189 LEU ASP ASP ILE ALA LEU THR LEU ARG LYS LEU ASP GLU SEQRES 15 B 189 ILE GLU ALA PHE GLU GLY ALA FORMUL 3 HOH *39(H2 O) HELIX 1 1 ASP A 20 ILE A 25 1 6 HELIX 2 2 PRO A 26 LEU A 30 5 5 HELIX 3 3 PHE A 38 LEU A 42 5 5 HELIX 4 4 GLY A 45 ASP A 49 5 5 HELIX 5 5 PHE A 52 LEU A 56 5 5 HELIX 6 6 PRO A 58 GLY A 62 5 5 HELIX 7 7 ARG A 77 GLY A 88 1 12 HELIX 8 8 GLY A 98 ALA A 108 1 11 HELIX 9 9 ALA A 116 SER A 130 1 15 HELIX 10 10 ASP A 156 GLU A 165 1 10 HELIX 11 11 ASP B 20 ILE B 25 1 6 HELIX 12 12 PRO B 26 LYS B 31 5 6 HELIX 13 13 PHE B 38 LEU B 42 5 5 HELIX 14 14 GLY B 45 ASP B 49 5 5 HELIX 15 15 PHE B 52 LEU B 56 5 5 HELIX 16 16 PRO B 58 GLY B 62 5 5 HELIX 17 17 ARG B 77 GLY B 88 1 12 HELIX 18 18 GLY B 98 ALA B 108 1 11 HELIX 19 19 ALA B 116 SER B 130 1 15 HELIX 20 20 ASP B 156 GLU B 165 1 10 SHEET 1 A 7 LEU A 111 GLU A 114 0 SHEET 2 A 7 VAL A 91 SER A 94 1 N VAL A 92 O LEU A 111 SHEET 3 A 7 VAL A 64 ALA A 67 1 N LEU A 65 O ILE A 93 SHEET 4 A 7 THR A 6 LEU A 14 1 N VAL A 12 O VAL A 64 SHEET 5 A 7 GLU A 134 ASN A 138 -1 O ALA A 137 N HIS A 7 SHEET 6 A 7 ILE A 143 ALA A 146 -1 O ILE A 143 N ASN A 138 SHEET 7 A 7 VAL A 149 PRO A 152 -1 O LEU A 151 N ILE A 144 SHEET 1 B 7 LEU B 111 GLU B 114 0 SHEET 2 B 7 VAL B 91 SER B 94 1 N VAL B 92 O LEU B 111 SHEET 3 B 7 VAL B 64 ALA B 67 1 N LEU B 65 O ILE B 93 SHEET 4 B 7 THR B 6 LEU B 14 1 N LEU B 14 O VAL B 66 SHEET 5 B 7 GLU B 134 ASN B 138 -1 O ALA B 137 N HIS B 7 SHEET 6 B 7 ILE B 143 ALA B 146 -1 O ILE B 143 N ASN B 138 SHEET 7 B 7 VAL B 149 PRO B 152 -1 O LEU B 151 N ILE B 144 CISPEP 1 SER A 57 PRO A 58 0 2.11 CISPEP 2 SER B 57 PRO B 58 0 4.82 CRYST1 90.480 70.290 59.650 90.00 124.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011052 0.000000 0.007469 0.00000 SCALE2 0.000000 0.014227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020234 0.00000