HEADER TRANSPORT PROTEIN 22-APR-09 3H5M OBSLTE 23-FEB-10 3H5M 3LRB TITLE STRUCTURE OF AN AMINO ACID ANTIPORTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE/AGMATINE ANTIPORTER; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AMINO ACID ANTIPORTER; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MEMBRANE PROTEIN, ANTIPORTER, AMINO-ACID TRANSPORT, KEYWDS 2 ANTIPORT, CELL INNER MEMBRANE, CELL MEMBRANE, MEMBRANE, KEYWDS 3 TRANSMEMBRANE, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.GAO,F.LU,L.ZHOU,J.WANG,Y.SHI REVDAT 3 23-FEB-10 3H5M 1 OBSLTE REVDAT 2 07-JUL-09 3H5M 1 JRNL REVDAT 1 02-JUN-09 3H5M 0 JRNL AUTH X.GAO,F.LU,L.ZHOU,S.DANG,L.SUN,X.LI,J.WANG,Y.SHI JRNL TITL STRUCTURE AND MECHANISM OF AN AMINO ACID ANTIPORTER JRNL REF SCIENCE V. 324 1565 2009 JRNL REFN ISSN 0036-8075 JRNL PMID 19478139 JRNL DOI 10.1126/SCIENCE.1173654 REMARK 2 REMARK 2 RESOLUTION. 3.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 15312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.333 REMARK 3 R VALUE (WORKING SET) : 0.333 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3274 - 6.5501 0.99 2746 127 0.2958 0.2393 REMARK 3 2 6.5501 - 5.2008 0.98 2528 198 0.3527 0.3987 REMARK 3 3 5.2008 - 4.5439 0.97 2690 0 0.2824 0.0000 REMARK 3 4 4.5439 - 4.1287 0.93 2285 254 0.3129 0.3358 REMARK 3 5 4.1287 - 3.8329 0.87 2345 0 0.3554 0.0000 REMARK 3 6 3.8329 - 3.6070 0.79 1905 234 0.4417 0.4500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.26 REMARK 3 B_SOL : 133.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 124.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 193.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 23.67200 REMARK 3 B22 (A**2) : 9.66400 REMARK 3 B33 (A**2) : -33.33600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6276 REMARK 3 ANGLE : 0.811 8586 REMARK 3 CHIRALITY : 0.055 1048 REMARK 3 PLANARITY : 0.007 1028 REMARK 3 DIHEDRAL : 19.552 3724 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 86.2290 60.8671 -1.1029 REMARK 3 T TENSOR REMARK 3 T11: 1.3119 T22: 1.0797 REMARK 3 T33: 1.3065 T12: -0.1536 REMARK 3 T13: -0.1306 T23: -0.0953 REMARK 3 L TENSOR REMARK 3 L11: -0.4946 L22: -2.2410 REMARK 3 L33: 0.9663 L12: -0.1158 REMARK 3 L13: -1.3468 L23: 0.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.2387 S13: -0.2958 REMARK 3 S21: 0.0980 S22: -0.1801 S23: 0.3520 REMARK 3 S31: 0.1846 S32: 0.2085 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 56.5808 42.5988 20.0974 REMARK 3 T TENSOR REMARK 3 T11: 1.0549 T22: 0.9650 REMARK 3 T33: 1.2052 T12: -0.3403 REMARK 3 T13: -0.0988 T23: -0.1113 REMARK 3 L TENSOR REMARK 3 L11: -0.8472 L22: 0.1434 REMARK 3 L33: 0.5950 L12: -1.5367 REMARK 3 L13: -0.7090 L23: 0.1763 REMARK 3 S TENSOR REMARK 3 S11: -0.1648 S12: 0.1088 S13: -0.2462 REMARK 3 S21: 0.1681 S22: -0.0551 S23: -0.1384 REMARK 3 S31: 0.6350 S32: -0.1869 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain A and (resseq 6:256 or resseq REMARK 3 277:435 ) REMARK 3 SELECTION : chain B and (resseq 6:256 or resseq REMARK 3 277:435 ) REMARK 3 ATOM PAIRS NUMBER : 3038 REMARK 3 RMSD : 0.002 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H5M COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB052721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-08; 01-DEC-08; 20-OCT- REMARK 200 08; 14-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8; SPRING-8; REMARK 200 SPRING-8 REMARK 200 BEAMLINE : BL41XU; BL41XU; BL41XU; BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00; 1.13979; 0.97911; REMARK 200 0.96419 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI; REMARK 200 SAGITALLY FOCUSED SI; REMARK 200 SAGITALLY FOCUSED SI; REMARK 200 SAGITALLY FOCUSED SI REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC REMARK 200 QUANTUM 315; ADSC QUANTUM 315; REMARK 200 MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16598 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.610 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 10.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; REMARK 200 SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4% NG, 0.1MM TRIS, 22% (W/V) PEG REMARK 280 400, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.40500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.05500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.05500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.40500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 257 REMARK 465 SER A 258 REMARK 465 ALA A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 PHE A 262 REMARK 465 GLY A 263 REMARK 465 ASP A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 465 ARG A 267 REMARK 465 MET A 268 REMARK 465 ALA A 269 REMARK 465 LEU A 270 REMARK 465 GLY A 271 REMARK 465 ASP A 272 REMARK 465 THR A 273 REMARK 465 ALA A 274 REMARK 465 GLY A 275 REMARK 465 ALA A 276 REMARK 465 TYR A 436 REMARK 465 PRO A 437 REMARK 465 LEU A 438 REMARK 465 ASP A 439 REMARK 465 ALA A 440 REMARK 465 PRO A 441 REMARK 465 ILE A 442 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ASP A 445 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 257 REMARK 465 SER B 258 REMARK 465 ALA B 259 REMARK 465 SER B 260 REMARK 465 PRO B 261 REMARK 465 PHE B 262 REMARK 465 GLY B 263 REMARK 465 ASP B 264 REMARK 465 ALA B 265 REMARK 465 ALA B 266 REMARK 465 ARG B 267 REMARK 465 MET B 268 REMARK 465 ALA B 269 REMARK 465 LEU B 270 REMARK 465 GLY B 271 REMARK 465 ASP B 272 REMARK 465 THR B 273 REMARK 465 ALA B 274 REMARK 465 GLY B 275 REMARK 465 ALA B 276 REMARK 465 TYR B 436 REMARK 465 PRO B 437 REMARK 465 LEU B 438 REMARK 465 ASP B 439 REMARK 465 ALA B 440 REMARK 465 PRO B 441 REMARK 465 ILE B 442 REMARK 465 SER B 443 REMARK 465 LYS B 444 REMARK 465 ASP B 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 431 CG CD1 CD2 REMARK 470 HIS A 432 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 ASN A 434 CG OD1 ND2 REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 431 CG CD1 CD2 REMARK 470 HIS B 432 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 433 CG CD CE NZ REMARK 470 ASN B 434 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 7 -13.92 -169.56 REMARK 500 HIS A 8 42.81 -76.75 REMARK 500 VAL A 10 140.97 66.65 REMARK 500 VAL A 28 -51.50 -146.73 REMARK 500 ILE A 41 89.83 45.94 REMARK 500 ALA A 42 79.84 54.71 REMARK 500 ASP A 67 103.97 -175.19 REMARK 500 SER A 69 -54.43 -154.49 REMARK 500 TYR A 74 -40.68 -137.21 REMARK 500 PHE A 81 -60.60 -140.10 REMARK 500 PRO A 83 -85.99 -42.58 REMARK 500 SER A 113 -79.32 -46.53 REMARK 500 PHE A 115 106.95 60.60 REMARK 500 PHE A 116 172.77 72.76 REMARK 500 PRO A 117 -102.73 10.15 REMARK 500 ILE A 118 94.56 40.69 REMARK 500 LEU A 119 -163.18 54.60 REMARK 500 ASP A 121 -54.78 -151.20 REMARK 500 PRO A 122 -141.98 -72.78 REMARK 500 VAL A 167 -64.36 -140.82 REMARK 500 TRP A 172 -120.91 -70.30 REMARK 500 ARG A 174 93.76 70.91 REMARK 500 VAL A 184 -40.28 -149.44 REMARK 500 SER A 185 -11.63 -169.33 REMARK 500 LEU A 187 101.25 39.51 REMARK 500 THR A 189 175.06 67.25 REMARK 500 PHE A 190 -116.61 -82.84 REMARK 500 ILE A 193 -41.45 -170.89 REMARK 500 GLN A 194 -8.91 170.95 REMARK 500 LEU A 201 -39.11 -135.22 REMARK 500 VAL A 207 33.01 -82.69 REMARK 500 ALA A 210 -35.86 -36.74 REMARK 500 SER A 211 -2.41 -158.92 REMARK 500 ALA A 213 -71.59 -62.47 REMARK 500 VAL A 217 5.20 -66.35 REMARK 500 LYS A 218 -6.18 -59.22 REMARK 500 PRO A 220 38.76 -92.72 REMARK 500 ARG A 222 -92.27 -62.38 REMARK 500 VAL A 224 -60.10 102.57 REMARK 500 PRO A 225 0.26 -62.68 REMARK 500 ILE A 226 -20.19 -140.34 REMARK 500 PRO A 251 -72.52 -59.79 REMARK 500 ALA A 253 102.11 -52.07 REMARK 500 LEU A 255 -41.95 68.91 REMARK 500 ALA A 284 -29.63 -143.06 REMARK 500 ALA A 304 14.50 -69.38 REMARK 500 ALA A 305 -86.48 -144.00 REMARK 500 PRO A 312 -94.93 -100.78 REMARK 500 PHE A 314 -79.24 -97.95 REMARK 500 ALA A 315 172.65 59.19 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ALA A 315 24.6 L L OUTSIDE RANGE REMARK 500 ALA B 315 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BNG A 446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BNG B 446 DBREF 3H5M A 1 445 UNP P60063 ADIC_ECO57 1 445 DBREF 3H5M B 1 445 UNP P60063 ADIC_ECO57 1 445 SEQRES 1 A 445 MET SER SER ASP ALA ASP ALA HIS LYS VAL GLY LEU ILE SEQRES 2 A 445 PRO VAL THR LEU MET VAL SER GLY ASN ILE MET GLY SER SEQRES 3 A 445 GLY VAL PHE LEU LEU PRO ALA ASN LEU ALA SER THR GLY SEQRES 4 A 445 GLY ILE ALA ILE TYR GLY TRP LEU VAL THR ILE ILE GLY SEQRES 5 A 445 ALA LEU GLY LEU SER MET VAL TYR ALA LYS MET SER PHE SEQRES 6 A 445 LEU ASP PRO SER PRO GLY GLY SER TYR ALA TYR ALA ARG SEQRES 7 A 445 ARG CYS PHE GLY PRO PHE LEU GLY TYR GLN THR ASN VAL SEQRES 8 A 445 LEU TYR TRP LEU ALA CYS TRP ILE GLY ASN ILE ALA MET SEQRES 9 A 445 VAL VAL ILE GLY VAL GLY TYR LEU SER TYR PHE PHE PRO SEQRES 10 A 445 ILE LEU LYS ASP PRO LEU VAL LEU THR ILE THR CYS VAL SEQRES 11 A 445 VAL VAL LEU TRP ILE PHE VAL LEU LEU ASN ILE VAL GLY SEQRES 12 A 445 PRO LYS MET ILE THR ARG VAL GLN ALA VAL ALA THR VAL SEQRES 13 A 445 LEU ALA LEU ILE PRO ILE VAL GLY ILE ALA VAL PHE GLY SEQRES 14 A 445 TRP PHE TRP PHE ARG GLY GLU THR TYR MET ALA ALA TRP SEQRES 15 A 445 ASN VAL SER GLY LEU GLY THR PHE GLY ALA ILE GLN SER SEQRES 16 A 445 THR LEU ASN VAL THR LEU TRP SER PHE ILE GLY VAL GLU SEQRES 17 A 445 SER ALA SER VAL ALA ALA GLY VAL VAL LYS ASN PRO LYS SEQRES 18 A 445 ARG ASN VAL PRO ILE ALA THR ILE GLY GLY VAL LEU ILE SEQRES 19 A 445 ALA ALA VAL CYS TYR VAL LEU SER THR THR ALA ILE MET SEQRES 20 A 445 GLY MET ILE PRO ASN ALA ALA LEU ARG VAL SER ALA SER SEQRES 21 A 445 PRO PHE GLY ASP ALA ALA ARG MET ALA LEU GLY ASP THR SEQRES 22 A 445 ALA GLY ALA ILE VAL SER PHE CYS ALA ALA ALA GLY CYS SEQRES 23 A 445 LEU GLY SER LEU GLY GLY TRP THR LEU LEU ALA GLY GLN SEQRES 24 A 445 THR ALA LYS ALA ALA ALA ASP ASP GLY LEU PHE PRO PRO SEQRES 25 A 445 ILE PHE ALA ARG VAL ASN LYS ALA GLY THR PRO VAL ALA SEQRES 26 A 445 GLY LEU ILE ILE VAL GLY ILE LEU MET THR ILE PHE GLN SEQRES 27 A 445 LEU SER SER ILE SER PRO ASN ALA THR LYS GLU PHE GLY SEQRES 28 A 445 LEU VAL SER SER VAL SER VAL ILE PHE THR LEU VAL PRO SEQRES 29 A 445 TYR LEU TYR THR CYS ALA ALA LEU LEU LEU LEU GLY HIS SEQRES 30 A 445 GLY HIS PHE GLY LYS ALA ARG PRO ALA TYR LEU ALA VAL SEQRES 31 A 445 THR THR ILE ALA PHE LEU TYR CYS ILE TRP ALA VAL VAL SEQRES 32 A 445 GLY SER GLY ALA LYS GLU VAL MET TRP SER PHE VAL THR SEQRES 33 A 445 LEU MET VAL ILE THR ALA MET TYR ALA LEU ASN TYR ASN SEQRES 34 A 445 ARG LEU HIS LYS ASN PRO TYR PRO LEU ASP ALA PRO ILE SEQRES 35 A 445 SER LYS ASP SEQRES 1 B 445 MET SER SER ASP ALA ASP ALA HIS LYS VAL GLY LEU ILE SEQRES 2 B 445 PRO VAL THR LEU MET VAL SER GLY ASN ILE MET GLY SER SEQRES 3 B 445 GLY VAL PHE LEU LEU PRO ALA ASN LEU ALA SER THR GLY SEQRES 4 B 445 GLY ILE ALA ILE TYR GLY TRP LEU VAL THR ILE ILE GLY SEQRES 5 B 445 ALA LEU GLY LEU SER MET VAL TYR ALA LYS MET SER PHE SEQRES 6 B 445 LEU ASP PRO SER PRO GLY GLY SER TYR ALA TYR ALA ARG SEQRES 7 B 445 ARG CYS PHE GLY PRO PHE LEU GLY TYR GLN THR ASN VAL SEQRES 8 B 445 LEU TYR TRP LEU ALA CYS TRP ILE GLY ASN ILE ALA MET SEQRES 9 B 445 VAL VAL ILE GLY VAL GLY TYR LEU SER TYR PHE PHE PRO SEQRES 10 B 445 ILE LEU LYS ASP PRO LEU VAL LEU THR ILE THR CYS VAL SEQRES 11 B 445 VAL VAL LEU TRP ILE PHE VAL LEU LEU ASN ILE VAL GLY SEQRES 12 B 445 PRO LYS MET ILE THR ARG VAL GLN ALA VAL ALA THR VAL SEQRES 13 B 445 LEU ALA LEU ILE PRO ILE VAL GLY ILE ALA VAL PHE GLY SEQRES 14 B 445 TRP PHE TRP PHE ARG GLY GLU THR TYR MET ALA ALA TRP SEQRES 15 B 445 ASN VAL SER GLY LEU GLY THR PHE GLY ALA ILE GLN SER SEQRES 16 B 445 THR LEU ASN VAL THR LEU TRP SER PHE ILE GLY VAL GLU SEQRES 17 B 445 SER ALA SER VAL ALA ALA GLY VAL VAL LYS ASN PRO LYS SEQRES 18 B 445 ARG ASN VAL PRO ILE ALA THR ILE GLY GLY VAL LEU ILE SEQRES 19 B 445 ALA ALA VAL CYS TYR VAL LEU SER THR THR ALA ILE MET SEQRES 20 B 445 GLY MET ILE PRO ASN ALA ALA LEU ARG VAL SER ALA SER SEQRES 21 B 445 PRO PHE GLY ASP ALA ALA ARG MET ALA LEU GLY ASP THR SEQRES 22 B 445 ALA GLY ALA ILE VAL SER PHE CYS ALA ALA ALA GLY CYS SEQRES 23 B 445 LEU GLY SER LEU GLY GLY TRP THR LEU LEU ALA GLY GLN SEQRES 24 B 445 THR ALA LYS ALA ALA ALA ASP ASP GLY LEU PHE PRO PRO SEQRES 25 B 445 ILE PHE ALA ARG VAL ASN LYS ALA GLY THR PRO VAL ALA SEQRES 26 B 445 GLY LEU ILE ILE VAL GLY ILE LEU MET THR ILE PHE GLN SEQRES 27 B 445 LEU SER SER ILE SER PRO ASN ALA THR LYS GLU PHE GLY SEQRES 28 B 445 LEU VAL SER SER VAL SER VAL ILE PHE THR LEU VAL PRO SEQRES 29 B 445 TYR LEU TYR THR CYS ALA ALA LEU LEU LEU LEU GLY HIS SEQRES 30 B 445 GLY HIS PHE GLY LYS ALA ARG PRO ALA TYR LEU ALA VAL SEQRES 31 B 445 THR THR ILE ALA PHE LEU TYR CYS ILE TRP ALA VAL VAL SEQRES 32 B 445 GLY SER GLY ALA LYS GLU VAL MET TRP SER PHE VAL THR SEQRES 33 B 445 LEU MET VAL ILE THR ALA MET TYR ALA LEU ASN TYR ASN SEQRES 34 B 445 ARG LEU HIS LYS ASN PRO TYR PRO LEU ASP ALA PRO ILE SEQRES 35 B 445 SER LYS ASP HET BNG A 446 21 HET BNG B 446 21 HETNAM BNG B-NONYLGLUCOSIDE FORMUL 3 BNG 2(C15 H30 O6) HELIX 1 1 GLY A 11 SER A 20 1 10 HELIX 2 2 SER A 20 SER A 26 1 7 HELIX 3 3 PRO A 32 SER A 37 1 6 HELIX 4 4 ILE A 43 ASP A 67 1 25 HELIX 5 5 GLY A 82 LEU A 112 1 31 HELIX 6 6 PRO A 122 GLY A 143 1 22 HELIX 7 7 MET A 146 ALA A 166 1 21 HELIX 8 8 VAL A 167 TRP A 172 1 6 HELIX 9 9 TYR A 178 ASN A 183 1 6 HELIX 10 10 SER A 195 THR A 200 1 6 HELIX 11 11 SER A 211 VAL A 217 1 7 HELIX 12 12 ILE A 226 GLY A 248 1 23 HELIX 13 13 ILE A 277 ALA A 284 1 8 HELIX 14 14 LEU A 287 ALA A 304 1 18 HELIX 15 15 PRO A 323 LEU A 339 1 17 HELIX 16 16 SER A 355 LEU A 375 1 21 HELIX 17 17 ALA A 383 GLY A 404 1 22 HELIX 18 18 ALA A 407 MET A 423 1 17 HELIX 19 19 TYR A 424 LEU A 426 5 3 HELIX 20 20 GLY B 11 SER B 20 1 10 HELIX 21 21 SER B 20 SER B 26 1 7 HELIX 22 22 PRO B 32 SER B 37 1 6 HELIX 23 23 ILE B 43 ASP B 67 1 25 HELIX 24 24 GLY B 82 LEU B 112 1 31 HELIX 25 25 PRO B 122 GLY B 143 1 22 HELIX 26 26 MET B 146 ALA B 166 1 21 HELIX 27 27 VAL B 167 TRP B 172 1 6 HELIX 28 28 TYR B 178 ASN B 183 1 6 HELIX 29 29 SER B 195 THR B 200 1 6 HELIX 30 30 SER B 211 VAL B 217 1 7 HELIX 31 31 ILE B 226 GLY B 248 1 23 HELIX 32 32 ILE B 277 ALA B 284 1 8 HELIX 33 33 LEU B 287 ALA B 304 1 18 HELIX 34 34 PRO B 323 LEU B 339 1 17 HELIX 35 35 SER B 355 LEU B 375 1 21 HELIX 36 36 ALA B 383 GLY B 404 1 22 HELIX 37 37 ALA B 407 MET B 423 1 17 HELIX 38 38 TYR B 424 LEU B 426 5 3 CISPEP 1 MET A 24 GLY A 25 0 -2.22 CISPEP 2 THR A 38 GLY A 39 0 4.75 CISPEP 3 ILE A 41 ALA A 42 0 -7.05 CISPEP 4 PRO A 68 SER A 69 0 -3.08 CISPEP 5 SER A 69 PRO A 70 0 -8.34 CISPEP 6 GLY A 71 GLY A 72 0 -2.97 CISPEP 7 PHE A 81 GLY A 82 0 -0.94 CISPEP 8 ILE A 118 LEU A 119 0 -8.23 CISPEP 9 GLY A 143 PRO A 144 0 1.12 CISPEP 10 PHE A 173 ARG A 174 0 5.02 CISPEP 11 ARG A 174 GLY A 175 0 1.24 CISPEP 12 TRP A 182 ASN A 183 0 3.13 CISPEP 13 GLY A 188 THR A 189 0 8.10 CISPEP 14 THR A 189 PHE A 190 0 1.65 CISPEP 15 ALA A 192 ILE A 193 0 -8.21 CISPEP 16 PHE A 314 ALA A 315 0 -7.13 CISPEP 17 ILE A 342 SER A 343 0 14.24 CISPEP 18 MET B 24 GLY B 25 0 -2.52 CISPEP 19 THR B 38 GLY B 39 0 4.90 CISPEP 20 ILE B 41 ALA B 42 0 -6.89 CISPEP 21 PRO B 68 SER B 69 0 -2.95 CISPEP 22 SER B 69 PRO B 70 0 -8.29 CISPEP 23 GLY B 71 GLY B 72 0 -2.83 CISPEP 24 PHE B 81 GLY B 82 0 -0.80 CISPEP 25 ILE B 118 LEU B 119 0 -8.21 CISPEP 26 GLY B 143 PRO B 144 0 1.30 CISPEP 27 PHE B 173 ARG B 174 0 4.95 CISPEP 28 ARG B 174 GLY B 175 0 0.99 CISPEP 29 TRP B 182 ASN B 183 0 2.97 CISPEP 30 GLY B 188 THR B 189 0 8.10 CISPEP 31 THR B 189 PHE B 190 0 1.66 CISPEP 32 ALA B 192 ILE B 193 0 -8.08 CISPEP 33 PHE B 314 ALA B 315 0 -6.86 CISPEP 34 ILE B 342 SER B 343 0 14.26 SITE 1 AC1 5 THR A 128 ILE A 135 VAL A 150 VAL A 153 SITE 2 AC1 5 LEU B 139 SITE 1 AC2 6 LEU A 138 LEU A 139 VAL A 142 PHE B 116 SITE 2 AC2 6 PRO B 117 THR B 128 CRYST1 92.810 108.300 138.110 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010775 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007241 0.00000