HEADER TRANSFERASE 23-APR-09 3H6L OBSLTE 03-OCT-12 3H6L 4H12 TITLE METHYLTRANSFERASE DOMAIN OF HUMAN SET DOMAIN-CONTAINING PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET DOMAIN-CONTAINING PROTEIN 2, HSET2, HUNTINGTIN- COMPND 5 INTERACTING PROTEIN B, HUNTINGTIN YEAST PARTNER B, HUNTINGTIN- COMPND 6 INTERACTING PROTEIN 1, HIF-1, P231HBP, LYSINE N-METHYLTRANSFERASE 3A; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD2, HIF1, HYPB, KIAA1732, KMT3A, SET2, HSPC069; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, SET DOMAIN-CONTAINING PROTEIN 2, S-ADENOSYL-L- KEYWDS 2 METHIONINE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 SGC, ACTIVATOR, CHROMATIN REGULATOR, DNA-BINDING, METHYLATION, KEYWDS 4 NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 5 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.F.AMAYA,H.ZENG,F.MACKENZIE,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 3 03-OCT-12 3H6L 1 OBSLTE REVDAT 2 13-JUL-11 3H6L 1 VERSN REVDAT 1 05-MAY-09 3H6L 0 JRNL AUTH H.ZENG,M.F.AMAYA,F.MACKENZIE,J.MIN,H.WU JRNL TITL THE CRYSTAL STRUCTURE OF METHYLTRANSFERASE DOMAIN OF HUMAN JRNL TITL 2 SET DOMAIN-CONTAINING PROTEIN 2 IN COMPLEX WITH JRNL TITL 3 S-ADENOSYL-L-METHIONINE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 21745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1108 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.26000 REMARK 3 B22 (A**2) : -4.36000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.810 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1804 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2441 ; 1.866 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 6.508 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;32.786 ;23.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;15.525 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;23.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 259 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1399 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 836 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1189 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 1.068 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1812 ; 1.559 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 724 ; 2.848 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 629 ; 3.789 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1447 A 1514 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1622 8.5906 20.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.0401 REMARK 3 T33: 0.0894 T12: -0.0376 REMARK 3 T13: 0.0417 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 0.8153 L22: 2.9991 REMARK 3 L33: 1.9466 L12: -0.7781 REMARK 3 L13: -0.7646 L23: 0.6376 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: -0.0989 S13: -0.1177 REMARK 3 S21: 0.3881 S22: -0.0432 S23: 0.2909 REMARK 3 S31: 0.1316 S32: -0.0704 S33: 0.1694 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1515 A 1598 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1294 12.6503 13.3019 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.0748 REMARK 3 T33: 0.0940 T12: -0.0348 REMARK 3 T13: -0.0075 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.0471 L22: 2.6849 REMARK 3 L33: 0.9326 L12: -1.2454 REMARK 3 L13: -0.4008 L23: 0.0269 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.0436 S13: -0.0072 REMARK 3 S21: 0.0725 S22: 0.0321 S23: -0.0441 REMARK 3 S31: 0.0674 S32: 0.0722 S33: 0.0292 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1599 A 1691 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9226 23.1563 12.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.1434 REMARK 3 T33: 0.1241 T12: -0.0145 REMARK 3 T13: -0.0110 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.9654 L22: 4.1501 REMARK 3 L33: 2.1631 L12: -1.2417 REMARK 3 L13: -0.6291 L23: 0.7105 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: 0.0125 S13: 0.0692 REMARK 3 S21: -0.1736 S22: 0.0048 S23: -0.1753 REMARK 3 S31: -0.2402 S32: -0.0753 S33: -0.0785 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB052756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21746 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 38.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.7690 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2R3A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PURIFIED SETD2 WAS COMPLEXED WITH S- REMARK 280 ADENOSYL-L-METHIONINE (ADOMET) AT 1:10 MOLAR RATIO OF PROTEIN: REMARK 280 ADOMET AND CRYSTALLIZED USING THE HANGING DROP VAPOR DIFFUSION REMARK 280 METHOD AT 20 C BY MIXING 1 UL OF THE PROTEIN SOLUTION WITH 1 UL REMARK 280 OF THE RESERVOIR SOLUTION CONTAINING 30% PEG 2K MME, 0.1 M KSCN, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.14650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.04650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.33150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.04650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.14650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.33150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1434 REMARK 465 GLU A 1435 REMARK 465 THR A 1436 REMARK 465 SER A 1437 REMARK 465 VAL A 1438 REMARK 465 PRO A 1439 REMARK 465 PRO A 1440 REMARK 465 GLY A 1441 REMARK 465 SER A 1442 REMARK 465 ALA A 1443 REMARK 465 LEU A 1444 REMARK 465 VAL A 1445 REMARK 465 GLY A 1446 REMARK 465 GLU A 1484 REMARK 465 ARG A 1485 REMARK 465 LYS A 1486 REMARK 465 LYS A 1487 REMARK 465 ASN A 1488 REMARK 465 LYS A 1489 REMARK 465 SER A 1490 REMARK 465 HIS A 1491 REMARK 465 ARG A 1492 REMARK 465 ASP A 1493 REMARK 465 ILE A 1494 REMARK 465 LYS A 1495 REMARK 465 ARG A 1496 REMARK 465 MET A 1497 REMARK 465 GLU A 1692 REMARK 465 ASN A 1693 REMARK 465 ARG A 1694 REMARK 465 VAL A 1695 REMARK 465 SER A 1696 REMARK 465 ILE A 1697 REMARK 465 ARG A 1698 REMARK 465 ALA A 1699 REMARK 465 ALA A 1700 REMARK 465 GLY A 1701 REMARK 465 GLY A 1702 REMARK 465 LYS A 1703 REMARK 465 MET A 1704 REMARK 465 LYS A 1705 REMARK 465 LYS A 1706 REMARK 465 GLU A 1707 REMARK 465 ARG A 1708 REMARK 465 SER A 1709 REMARK 465 ARG A 1710 REMARK 465 LYS A 1711 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A1450 CG1 CG2 REMARK 470 ARG A1455 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1458 CG CD OE1 NE2 REMARK 470 ARG A1459 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1461 CG CD CE NZ REMARK 470 GLU A1462 CG CD OE1 OE2 REMARK 470 LYS A1465 CG CD CE NZ REMARK 470 GLN A1466 CG CD OE1 NE2 REMARK 470 LYS A1468 CG CD CE NZ REMARK 470 GLU A1477 CG CD OE1 OE2 REMARK 470 GLU A1478 CG CD OE1 OE2 REMARK 470 GLN A1498 CG CD OE1 NE2 REMARK 470 GLU A1500 CG CD OE1 OE2 REMARK 470 THR A1502 OG1 CG2 REMARK 470 LEU A1504 CG CD1 CD2 REMARK 470 LYS A1506 CG CD CE NZ REMARK 470 ASP A1507 CG OD1 OD2 REMARK 470 ARG A1509 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1518 CG CD OE1 OE2 REMARK 470 ASP A1519 CG OD1 OD2 REMARK 470 LEU A1521 CG CD1 CD2 REMARK 470 ARG A1532 CG CD NE CZ NH1 NH2 REMARK 470 TYR A1538 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A1542 NH1 REMARK 470 GLU A1558 CG CD OE1 OE2 REMARK 470 LYS A1559 CG CD CE NZ REMARK 470 LYS A1568 CG CD CE NZ REMARK 470 LYS A1600 CE NZ REMARK 470 ILE A1602 CD1 REMARK 470 ASN A1611 CG OD1 ND2 REMARK 470 VAL A1648 CG1 CG2 REMARK 470 LEU A1655 CG CD1 CD2 REMARK 470 LYS A1673 CG CD CE NZ REMARK 470 GLU A1674 CG CD OE1 OE2 REMARK 470 ASN A1684 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 1670 CE SAM A 1 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A1666 C GLN A1667 N 0.253 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1542 NE - CZ - NH2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG A1647 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A1647 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A1539 115.71 -38.71 REMARK 500 ASN A1541 40.95 -103.44 REMARK 500 ASN A1573 38.97 70.51 REMARK 500 VAL A1576 -62.31 -98.49 REMARK 500 ALA A1617 33.04 -90.84 REMARK 500 ASN A1622 -167.57 -125.95 REMARK 500 PHE A1668 -0.10 71.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A1666 14.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 92 DISTANCE = 6.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1088 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1499 SG REMARK 620 2 CYS A1501 SG 111.3 REMARK 620 3 CYS A1516 SG 105.6 108.1 REMARK 620 4 CYS A1520 SG 111.4 108.5 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1089 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1516 SG REMARK 620 2 CYS A1529 SG 117.7 REMARK 620 3 CYS A1533 SG 94.2 115.8 REMARK 620 4 CYS A1539 SG 113.7 102.0 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1090 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1631 SG REMARK 620 2 CYS A1678 SG 119.5 REMARK 620 3 CYS A1680 SG 107.2 108.1 REMARK 620 4 CYS A1685 SG 108.7 105.7 107.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1088 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1089 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1090 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1 DBREF 3H6L A 1434 1711 UNP Q9BYW2 SETD2_HUMAN 1434 1711 SEQRES 1 A 278 GLY GLU THR SER VAL PRO PRO GLY SER ALA LEU VAL GLY SEQRES 2 A 278 PRO SER CYS VAL MET ASP ASP PHE ARG ASP PRO GLN ARG SEQRES 3 A 278 TRP LYS GLU CYS ALA LYS GLN GLY LYS MET PRO CYS TYR SEQRES 4 A 278 PHE ASP LEU ILE GLU GLU ASN VAL TYR LEU THR GLU ARG SEQRES 5 A 278 LYS LYS ASN LYS SER HIS ARG ASP ILE LYS ARG MET GLN SEQRES 6 A 278 CYS GLU CYS THR PRO LEU SER LYS ASP GLU ARG ALA GLN SEQRES 7 A 278 GLY GLU ILE ALA CYS GLY GLU ASP CYS LEU ASN ARG LEU SEQRES 8 A 278 LEU MET ILE GLU CYS SER SER ARG CYS PRO ASN GLY ASP SEQRES 9 A 278 TYR CYS SER ASN ARG ARG PHE GLN ARG LYS GLN HIS ALA SEQRES 10 A 278 ASP VAL GLU VAL ILE LEU THR GLU LYS LYS GLY TRP GLY SEQRES 11 A 278 LEU ARG ALA ALA LYS ASP LEU PRO SER ASN THR PHE VAL SEQRES 12 A 278 LEU GLU TYR CYS GLY GLU VAL LEU ASP HIS LYS GLU PHE SEQRES 13 A 278 LYS ALA ARG VAL LYS GLU TYR ALA ARG ASN LYS ASN ILE SEQRES 14 A 278 HIS TYR TYR PHE MET ALA LEU LYS ASN ASP GLU ILE ILE SEQRES 15 A 278 ASP ALA THR GLN LYS GLY ASN CYS SER ARG PHE MET ASN SEQRES 16 A 278 HIS SER CYS GLU PRO ASN CYS GLU THR GLN LYS TRP THR SEQRES 17 A 278 VAL ASN GLY GLN LEU ARG VAL GLY PHE PHE THR THR LYS SEQRES 18 A 278 LEU VAL PRO SER GLY SER GLU LEU THR PHE ASP TYR GLN SEQRES 19 A 278 PHE GLN ARG TYR GLY LYS GLU ALA GLN LYS CYS PHE CYS SEQRES 20 A 278 GLY SER ALA ASN CYS ARG GLY TYR LEU GLY GLY GLU ASN SEQRES 21 A 278 ARG VAL SER ILE ARG ALA ALA GLY GLY LYS MET LYS LYS SEQRES 22 A 278 GLU ARG SER ARG LYS HET ZN A1088 1 HET ZN A1089 1 HET ZN A1090 1 HET SAM A 1 27 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 SAM C15 H22 N6 O5 S FORMUL 6 HOH *139(H2 O) HELIX 1 1 ASP A 1452 ARG A 1455 5 4 HELIX 2 2 ASP A 1456 GLN A 1466 1 11 HELIX 3 3 SER A 1505 GLY A 1512 1 8 HELIX 4 4 ASN A 1522 MET A 1526 5 5 HELIX 5 5 ASN A 1535 CYS A 1539 5 5 HELIX 6 6 ASP A 1585 ASN A 1599 1 15 HELIX 7 7 ASN A 1622 MET A 1627 5 6 SHEET 1 A 3 SER A1448 VAL A1450 0 SHEET 2 A 3 VAL A1552 LEU A1556 -1 O VAL A1554 N CYS A1449 SHEET 3 A 3 TRP A1562 ALA A1566 -1 O ARG A1565 N GLU A1553 SHEET 1 B 2 ASP A1474 LEU A1475 0 SHEET 2 B 2 LYS A1620 GLY A1621 1 O GLY A1621 N ASP A1474 SHEET 1 C 5 VAL A1480 TYR A1481 0 SHEET 2 C 5 GLU A1582 LEU A1584 1 O VAL A1583 N VAL A1480 SHEET 3 C 5 GLU A1613 ASP A1616 -1 O ILE A1614 N LEU A1584 SHEET 4 C 5 PHE A1606 LYS A1610 -1 N LYS A1610 O GLU A1613 SHEET 5 C 5 ARG A1670 TYR A1671 -1 O TYR A1671 N PHE A1606 SHEET 1 D 3 PHE A1575 GLU A1578 0 SHEET 2 D 3 GLN A1645 THR A1652 -1 O PHE A1650 N VAL A1576 SHEET 3 D 3 CYS A1635 VAL A1642 -1 N VAL A1642 O GLN A1645 SHEET 1 E 2 ASN A1628 HIS A1629 0 SHEET 2 E 2 THR A1663 PHE A1664 1 O PHE A1664 N ASN A1628 SHEET 1 F 2 GLN A1676 LYS A1677 0 SHEET 2 F 2 TYR A1688 LEU A1689 -1 O LEU A1689 N GLN A1676 LINK SG CYS A1499 ZN ZN A1088 1555 1555 2.21 LINK SG CYS A1501 ZN ZN A1088 1555 1555 2.30 LINK SG CYS A1516 ZN ZN A1088 1555 1555 2.44 LINK SG CYS A1516 ZN ZN A1089 1555 1555 2.25 LINK SG CYS A1520 ZN ZN A1088 1555 1555 2.47 LINK SG CYS A1529 ZN ZN A1089 1555 1555 2.42 LINK SG CYS A1533 ZN ZN A1089 1555 1555 2.39 LINK SG CYS A1539 ZN ZN A1089 1555 1555 2.28 LINK SG CYS A1631 ZN ZN A1090 1555 1555 2.46 LINK SG CYS A1678 ZN ZN A1090 1555 1555 2.21 LINK SG CYS A1680 ZN ZN A1090 1555 1555 2.32 LINK SG CYS A1685 ZN ZN A1090 1555 1555 2.52 SITE 1 AC1 4 CYS A1499 CYS A1501 CYS A1516 CYS A1520 SITE 1 AC2 4 CYS A1516 CYS A1529 CYS A1533 CYS A1539 SITE 1 AC3 4 CYS A1631 CYS A1678 CYS A1680 CYS A1685 SITE 1 AC4 23 HOH A 9 HOH A 23 HOH A 66 HOH A 88 SITE 2 AC4 23 LYS A1560 GLY A1561 TRP A1562 ILE A1602 SITE 3 AC4 23 HIS A1603 TYR A1604 TYR A1605 ARG A1625 SITE 4 AC4 23 PHE A1626 MET A1627 ASN A1628 HIS A1629 SITE 5 AC4 23 TYR A1666 ARG A1670 GLN A1676 LYS A1677 SITE 6 AC4 23 CYS A1678 PHE A1679 LEU A1689 CRYST1 52.293 76.663 78.093 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012805 0.00000