HEADER HYDROLASE 28-APR-09 3H7O TITLE CRYSTAL STRUCTURE OF SCABIES MITE INACTIVATED PROTEASE PARALOGUE S-I1 TITLE 2 (SMIPP-S-I1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP 3 ALLERGEN SMIPP-S YV6023A04; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 29-256; COMPND 5 SYNONYM: SCABIES MITE INACTIVATED PROTEASE PARALOGUE S-I1, SMIPP-S- COMPND 6 I1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: SMIPP-S-I1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARCOPTES SCABIEI TYPE HOMINIS; SOURCE 3 ORGANISM_TAXID: 197185; SOURCE 4 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BUCKLE REVDAT 5 06-SEP-23 3H7O 1 REMARK REVDAT 4 13-OCT-21 3H7O 1 REMARK SEQADV REVDAT 3 13-JUL-11 3H7O 1 VERSN REVDAT 2 28-JUL-09 3H7O 1 JRNL REVDAT 1 12-MAY-09 3H7O 0 JRNL AUTH K.FISCHER,C.G.LANGENDORF,J.A.IRVING,S.REYNOLDS,C.WILLIS, JRNL AUTH 2 S.BECKHAM,R.H.LAW,S.YANG,T.A.BASHTANNYK-PUHALOVICH, JRNL AUTH 3 S.MCGOWAN,J.C.WHISSTOCK,R.N.PIKE,D.J.KEMP,A.M.BUCKLE JRNL TITL STRUCTURAL MECHANISMS OF INACTIVATION IN SCABIES MITE SERINE JRNL TITL 2 PROTEASE PARALOGUES. JRNL REF J.MOL.BIOL. V. 390 635 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19427318 JRNL DOI 10.1016/J.JMB.2009.04.082 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 34954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : 1.18000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.254 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3609 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4913 ; 0.996 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 5.833 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;31.790 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;11.665 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2692 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 0.764 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3667 ; 1.479 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1351 ; 2.338 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1246 ; 3.676 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8500 53.5740 21.7320 REMARK 3 T TENSOR REMARK 3 T11: -0.1250 T22: -0.1589 REMARK 3 T33: -0.1417 T12: -0.0005 REMARK 3 T13: -0.0170 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.5937 L22: 0.7809 REMARK 3 L33: 2.0457 L12: -0.2083 REMARK 3 L13: -1.0264 L23: 0.2049 REMARK 3 S TENSOR REMARK 3 S11: 0.0617 S12: -0.0945 S13: -0.0054 REMARK 3 S21: -0.0336 S22: -0.0326 S23: 0.0005 REMARK 3 S31: -0.0310 S32: -0.0849 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9410 45.1460 55.0130 REMARK 3 T TENSOR REMARK 3 T11: -0.1335 T22: -0.1758 REMARK 3 T33: -0.1181 T12: -0.0034 REMARK 3 T13: 0.0112 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.5645 L22: 0.9594 REMARK 3 L33: 2.4771 L12: -0.4270 REMARK 3 L13: 0.5565 L23: -0.3543 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.0157 S13: -0.1244 REMARK 3 S21: -0.0061 S22: 0.0119 S23: 0.1071 REMARK 3 S31: 0.1523 S32: -0.1420 S33: -0.0316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: RESIDUAL ONLY. REMARK 4 REMARK 4 3H7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 57.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 7.1150 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : 0.32400 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.2 REMARK 200 STARTING MODEL: PDB ENTRY 1FI8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% V/V PEG 8000, 10% V/V GLYCEROL, REMARK 280 0.1 M TRIS-HCL PH 8.5, 0.2 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.70750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.34650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.28900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.34650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.70750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.28900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 2 REMARK 465 GLY B 3 REMARK 465 GLN B 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 24 CD OE1 OE2 REMARK 470 LYS A 50 CE NZ REMARK 470 GLU A 85 CD OE1 OE2 REMARK 470 LYS A 111 CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLN A 134 CD OE1 NE2 REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 LYS B 6 CD CE NZ REMARK 470 LYS B 50 CD CE NZ REMARK 470 LYS B 120 CD CE NZ REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 GLU B 155 CD OE1 OE2 REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 72 32.41 -93.31 REMARK 500 LEU A 105 -69.60 -129.08 REMARK 500 GLN A 134 40.31 -89.36 REMARK 500 GLN A 168 39.57 -97.39 REMARK 500 GLN A 191 -113.76 59.31 REMARK 500 TYR B 73 54.79 -108.94 REMARK 500 LEU B 105 -61.86 -128.50 REMARK 500 GLN B 191 -117.29 60.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 231 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H7T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCABIES MITE INACTIVATED PROTEASE PARALOGUE S- REMARK 900 D1 (SMIPP-S-D1) DBREF 3H7O A 2 229 UNP Q6VPT6 Q6VPT6_SARSC 29 256 DBREF 3H7O B 2 229 UNP Q6VPT6 Q6VPT6_SARSC 29 256 SEQADV 3H7O GLN A 84 UNP Q6VPT6 ASN 111 ENGINEERED MUTATION SEQADV 3H7O GLN A 147 UNP Q6VPT6 ASN 174 ENGINEERED MUTATION SEQADV 3H7O GLN A 191 UNP Q6VPT6 ASN 218 ENGINEERED MUTATION SEQADV 3H7O GLN B 84 UNP Q6VPT6 ASN 111 ENGINEERED MUTATION SEQADV 3H7O GLN B 147 UNP Q6VPT6 ASN 174 ENGINEERED MUTATION SEQADV 3H7O GLN B 191 UNP Q6VPT6 ASN 218 ENGINEERED MUTATION SEQRES 1 A 228 LYS GLY GLY GLU LYS THR ASP ILE LYS GLN VAL PRO TRP SEQRES 2 A 228 THR VAL ALA VAL ARG THR TYR PRO GLY GLU GLU SER LEU SEQRES 3 A 228 THR CYS GLY GLY ALA ILE LEU SER GLN TRP PHE VAL LEU SEQRES 4 A 228 THR ALA ALA HIS CYS VAL PHE ASP GLN LYS PRO GLU THR SEQRES 5 A 228 ILE VAL ILE GLN TYR GLU SER THR ASN LEU TRP GLU ASP SEQRES 6 A 228 PRO GLY LYS SER ASP PRO TYR VAL SER HIS VAL TYR LEU SEQRES 7 A 228 SER PHE TYR ARG GLN GLU THR MET GLU ASN ASP ILE ALA SEQRES 8 A 228 ILE LEU GLU LEU SER ARG PRO LEU LYS LEU ASP GLY LEU SEQRES 9 A 228 LYS SER LYS PRO ALA LYS LEU PRO ASP ILE GLU PHE ARG SEQRES 10 A 228 PRO LYS THR GLY SER ASP VAL LEU VAL SER GLY TYR GLY SEQRES 11 A 228 ASP GLY GLN THR MET ASP PRO LYS ASP HIS ASP LEU LYS SEQRES 12 A 228 SER ALA GLN LEU THR VAL VAL ASP LEU ASP GLU CYS ARG SEQRES 13 A 228 THR LYS TYR GLY PRO ILE PHE LEU SER LEU GLN VAL PHE SEQRES 14 A 228 CYS ALA GLN LYS VAL GLY VAL SER LEU GLU SER GLY ASP SEQRES 15 A 228 ALA GLY ASP PRO THR VAL GLN GLN ASP THR LEU VAL GLY SEQRES 16 A 228 VAL ALA ALA TYR PHE PRO LYS ARG PRO GLU GLY ALA PRO SEQRES 17 A 228 GLU VAL PHE THR LYS VAL GLY SER TYR VAL SER TRP ILE SEQRES 18 A 228 GLN ASP ILE ILE LYS LYS LYS SEQRES 1 B 228 LYS GLY GLY GLU LYS THR ASP ILE LYS GLN VAL PRO TRP SEQRES 2 B 228 THR VAL ALA VAL ARG THR TYR PRO GLY GLU GLU SER LEU SEQRES 3 B 228 THR CYS GLY GLY ALA ILE LEU SER GLN TRP PHE VAL LEU SEQRES 4 B 228 THR ALA ALA HIS CYS VAL PHE ASP GLN LYS PRO GLU THR SEQRES 5 B 228 ILE VAL ILE GLN TYR GLU SER THR ASN LEU TRP GLU ASP SEQRES 6 B 228 PRO GLY LYS SER ASP PRO TYR VAL SER HIS VAL TYR LEU SEQRES 7 B 228 SER PHE TYR ARG GLN GLU THR MET GLU ASN ASP ILE ALA SEQRES 8 B 228 ILE LEU GLU LEU SER ARG PRO LEU LYS LEU ASP GLY LEU SEQRES 9 B 228 LYS SER LYS PRO ALA LYS LEU PRO ASP ILE GLU PHE ARG SEQRES 10 B 228 PRO LYS THR GLY SER ASP VAL LEU VAL SER GLY TYR GLY SEQRES 11 B 228 ASP GLY GLN THR MET ASP PRO LYS ASP HIS ASP LEU LYS SEQRES 12 B 228 SER ALA GLN LEU THR VAL VAL ASP LEU ASP GLU CYS ARG SEQRES 13 B 228 THR LYS TYR GLY PRO ILE PHE LEU SER LEU GLN VAL PHE SEQRES 14 B 228 CYS ALA GLN LYS VAL GLY VAL SER LEU GLU SER GLY ASP SEQRES 15 B 228 ALA GLY ASP PRO THR VAL GLN GLN ASP THR LEU VAL GLY SEQRES 16 B 228 VAL ALA ALA TYR PHE PRO LYS ARG PRO GLU GLY ALA PRO SEQRES 17 B 228 GLU VAL PHE THR LYS VAL GLY SER TYR VAL SER TRP ILE SEQRES 18 B 228 GLN ASP ILE ILE LYS LYS LYS HET SO4 A 1 5 HET SO4 A 230 5 HET GOL A 231 6 HET GOL A 232 6 HET GOL A 233 6 HET SO4 B 1 5 HET SO4 B 230 5 HET GOL B 231 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 11 HOH *323(H2 O) HELIX 1 1 ASP A 8 VAL A 12 5 5 HELIX 2 2 TYR A 21 GLU A 25 5 5 HELIX 3 3 ALA A 42 PHE A 47 1 6 HELIX 4 4 LYS A 50 ILE A 54 5 5 HELIX 5 5 ASP A 137 ASP A 142 5 6 HELIX 6 6 ASP A 152 GLY A 161 1 10 HELIX 7 7 GLU A 180 ALA A 184 5 5 HELIX 8 8 TYR A 218 LYS A 227 1 10 HELIX 9 9 ASP B 8 VAL B 12 5 5 HELIX 10 10 TYR B 21 GLU B 25 5 5 HELIX 11 11 ALA B 42 PHE B 47 1 6 HELIX 12 12 LYS B 50 ILE B 54 5 5 HELIX 13 13 ASP B 137 ASP B 142 5 6 HELIX 14 14 ASP B 152 GLY B 161 1 10 HELIX 15 15 GLU B 180 ALA B 184 5 5 HELIX 16 16 TYR B 218 LYS B 227 1 10 SHEET 1 A 8 GLU A 5 LYS A 6 0 SHEET 2 A 8 LYS A 144 VAL A 151 -1 O SER A 145 N GLU A 5 SHEET 3 A 8 VAL A 169 GLN A 173 -1 O GLN A 173 N THR A 149 SHEET 4 A 8 GLU A 210 LYS A 214 -1 O PHE A 212 N PHE A 170 SHEET 5 A 8 THR A 193 ALA A 198 -1 N VAL A 197 O THR A 213 SHEET 6 A 8 PRO A 187 GLN A 190 -1 N GLN A 190 O THR A 193 SHEET 7 A 8 ASP A 124 GLY A 129 -1 N LEU A 126 O VAL A 189 SHEET 8 A 8 LYS A 144 VAL A 151 -1 O LEU A 148 N VAL A 125 SHEET 1 B 7 LYS A 69 ASP A 71 0 SHEET 2 B 7 VAL A 55 TYR A 58 -1 N TYR A 58 O LYS A 69 SHEET 3 B 7 THR A 15 THR A 20 -1 N ARG A 19 O VAL A 55 SHEET 4 B 7 LEU A 27 ILE A 33 -1 O CYS A 29 N VAL A 18 SHEET 5 B 7 PHE A 38 THR A 41 -1 O LEU A 40 N ALA A 32 SHEET 6 B 7 ALA A 92 LEU A 96 -1 O LEU A 94 N VAL A 39 SHEET 7 B 7 VAL A 74 LEU A 79 -1 N TYR A 78 O ILE A 93 SHEET 1 C 7 LYS B 69 ASP B 71 0 SHEET 2 C 7 VAL B 55 TYR B 58 -1 N TYR B 58 O LYS B 69 SHEET 3 C 7 THR B 15 THR B 20 -1 N ARG B 19 O VAL B 55 SHEET 4 C 7 LEU B 27 SER B 35 -1 O CYS B 29 N VAL B 18 SHEET 5 C 7 PHE B 38 THR B 41 -1 O LEU B 40 N ALA B 32 SHEET 6 C 7 ALA B 92 LEU B 96 -1 O LEU B 94 N VAL B 39 SHEET 7 C 7 VAL B 74 LEU B 79 -1 N TYR B 78 O ILE B 93 SHEET 1 D 7 ASP B 124 GLY B 129 0 SHEET 2 D 7 LYS B 144 VAL B 151 -1 O LYS B 144 N GLY B 129 SHEET 3 D 7 VAL B 169 GLN B 173 -1 O CYS B 171 N VAL B 151 SHEET 4 D 7 GLU B 210 LYS B 214 -1 O PHE B 212 N PHE B 170 SHEET 5 D 7 THR B 193 ALA B 198 -1 N VAL B 197 O THR B 213 SHEET 6 D 7 PRO B 187 GLN B 190 -1 N GLN B 190 O THR B 193 SHEET 7 D 7 ASP B 124 GLY B 129 -1 N LEU B 126 O VAL B 189 SSBOND 1 CYS A 29 CYS A 45 1555 1555 2.04 SSBOND 2 CYS A 156 CYS A 171 1555 1555 2.03 SSBOND 3 CYS B 29 CYS B 45 1555 1555 2.04 SSBOND 4 CYS B 156 CYS B 171 1555 1555 2.03 SITE 1 AC1 5 LYS A 101 VAL A 175 GLY A 176 GOL A 231 SITE 2 AC1 5 HOH A 310 SITE 1 AC2 5 SER A 178 GLU A 206 GLY A 207 GOL A 231 SITE 2 AC2 5 HOH A 241 SITE 1 AC3 12 SO4 A 1 GLN A 173 LYS A 174 VAL A 177 SITE 2 AC3 12 SER A 178 ARG A 204 GLY A 207 ALA A 208 SITE 3 AC3 12 GLU A 210 SO4 A 230 HOH A 241 HOH A 335 SITE 1 AC4 8 GLY A 4 GLY A 129 LYS A 144 SER A 145 SITE 2 AC4 8 ALA A 146 LEU A 179 ASP A 183 ASP A 186 SITE 1 AC5 3 ARG A 118 THR A 121 ASP A 152 SITE 1 AC6 5 LYS A 227 ARG B 118 HOH B 343 HOH B 362 SITE 2 AC6 5 HOH B 367 SITE 1 AC7 3 TYR B 73 SER B 97 ARG B 98 SITE 1 AC8 5 GLN A 191 SER B 178 GLU B 206 GLY B 207 SITE 2 AC8 5 HOH B 288 CRYST1 47.415 80.578 114.693 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008719 0.00000