HEADER HYDROLASE 28-APR-09 3H7T TITLE CRYSTAL STRUCTURE OF SCABIES MITE INACTIVATED PROTEASE PARALOGUE S-D1 TITLE 2 (SMIPP-S-D1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP 3 ALLERGEN SMIPP-S YVT004A06; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 27-261; COMPND 5 SYNONYM: SCABIES MITE INACTIVATED PROTEASE PARALOGUE S-D1, SMIPP-S- COMPND 6 D1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: SMIPP-S-D1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARCOPTES SCABIEI TYPE HOMINIS; SOURCE 3 ORGANISM_TAXID: 197185; SOURCE 4 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BUCKLE REVDAT 4 06-SEP-23 3H7T 1 REMARK LINK REVDAT 3 13-JUL-11 3H7T 1 VERSN REVDAT 2 28-JUL-09 3H7T 1 JRNL REVDAT 1 12-MAY-09 3H7T 0 JRNL AUTH K.FISCHER,C.G.LANGENDORF,J.A.IRVING,S.REYNOLDS,C.WILLIS, JRNL AUTH 2 S.BECKHAM,R.H.LAW,S.YANG,T.A.BASHTANNYK-PUHALOVICH, JRNL AUTH 3 S.MCGOWAN,J.C.WHISSTOCK,R.N.PIKE,D.J.KEMP,A.M.BUCKLE JRNL TITL STRUCTURAL MECHANISMS OF INACTIVATION IN SCABIES MITE SERINE JRNL TITL 2 PROTEASE PARALOGUES. JRNL REF J.MOL.BIOL. V. 390 635 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19427318 JRNL DOI 10.1016/J.JMB.2009.04.082 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 56996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3985 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.89000 REMARK 3 B22 (A**2) : 1.89000 REMARK 3 B33 (A**2) : -3.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.020 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.104 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3625 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4943 ; 1.080 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 5.497 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;38.402 ;24.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;14.384 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2718 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2331 ; 0.889 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3773 ; 1.962 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 3.677 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1166 ; 5.333 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H,K,L REMARK 3 TWIN FRACTION : 0.579 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-H-K,-L REMARK 3 TWIN FRACTION : 0.421 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7428 77.3984 10.1484 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.0934 REMARK 3 T33: 0.0400 T12: 0.0232 REMARK 3 T13: -0.0451 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.7089 L22: 0.6016 REMARK 3 L33: 0.6636 L12: -0.2810 REMARK 3 L13: 0.5014 L23: -0.2496 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.0223 S13: 0.0223 REMARK 3 S21: 0.1469 S22: -0.0305 S23: -0.0497 REMARK 3 S31: -0.1195 S32: -0.0056 S33: 0.0944 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): 56.0033 61.9581 22.7603 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.1722 REMARK 3 T33: 0.0606 T12: -0.0153 REMARK 3 T13: -0.0429 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 1.3990 L22: 0.5477 REMARK 3 L33: 0.4796 L12: -0.2000 REMARK 3 L13: 0.6979 L23: -0.3158 REMARK 3 S TENSOR REMARK 3 S11: -0.1016 S12: 0.1842 S13: 0.1010 REMARK 3 S21: 0.0257 S22: 0.0001 S23: -0.0223 REMARK 3 S31: -0.0644 S32: 0.1173 S33: 0.1015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: RESIDUAL ONLY. REMARK 4 REMARK 4 3H7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67071 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 57.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 3.4950 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.01400 REMARK 200 R SYM FOR SHELL (I) : 1.40500 REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.2 REMARK 200 STARTING MODEL: PDB ENTRY 3H7O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% V/V PEG 8000, 10% V/V GLYCEROL, REMARK 280 0.1 M TRIS-HCL PH 8.5, 0.2 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.85300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.85300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.85300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR B 176 REMARK 465 ASP B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 23 CE NZ REMARK 470 MET A 93 SD CE REMARK 470 ASP A 99 CG OD1 OD2 REMARK 470 GLU A 115 OE1 OE2 REMARK 470 LYS A 157 CE NZ REMARK 470 ASN A 193 CG OD1 ND2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LYS B 5 CE NZ REMARK 470 ASP B 21 CG OD1 OD2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 MET B 68 CG SD CE REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 71 CE NZ REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 MET B 93 CG SD CE REMARK 470 LYS B 96 CD CE NZ REMARK 470 ASP B 99 CG OD1 OD2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 LYS B 150 CD CE NZ REMARK 470 GLU B 160 CD OE1 OE2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 SER B 205 OG REMARK 470 LYS B 233 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 272 O HOH A 333 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 7 -163.12 -114.46 REMARK 500 GLU A 22 19.98 57.66 REMARK 500 LYS A 100 -65.95 -142.98 REMARK 500 ASP A 117 -7.44 78.70 REMARK 500 GLU A 209 -9.49 84.16 REMARK 500 GLU B 22 17.97 56.13 REMARK 500 LYS B 96 83.97 -69.94 REMARK 500 ASP B 98 -167.66 -103.37 REMARK 500 ASP B 117 -3.07 78.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 238 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HOH A 332 O 109.1 REMARK 620 3 ASP B 223 OD2 109.8 103.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 236 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 ASP B 167 OD1 113.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 239 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 209 OE2 REMARK 620 2 HOH A 384 O 104.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 240 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 OD2 REMARK 620 2 HOH A 303 O 99.3 REMARK 620 3 HIS B 78 NE2 105.5 105.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 236 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H7O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCABIES MITE INACTIVATED PROTEASE PARALOGUE S- REMARK 900 I1 (SMIPP-S-I1) DBREF 3H7T A 1 235 UNP Q6VPT2 Q6VPT2_SARSC 27 261 DBREF 3H7T B 1 235 UNP Q6VPT2 Q6VPT2_SARSC 27 261 SEQRES 1 A 235 ILE ILE GLY GLY LYS LYS SER ASP ILE THR LYS GLU PRO SEQRES 2 A 235 TRP ALA VAL GLY VAL LEU VAL ASP GLU LYS PRO PHE CYS SEQRES 3 A 235 GLY GLY SER ILE LEU THR ALA ASN PHE VAL ILE THR ALA SEQRES 4 A 235 ALA GLN CYS VAL ASP GLY THR LYS PRO SER ASP ILE SER SEQRES 5 A 235 ILE HIS TYR GLY SER SER TYR ARG THR THR LYS GLY THR SEQRES 6 A 235 SER VAL MET ALA LYS LYS ILE TYR ILE VAL ARG TYR HIS SEQRES 7 A 235 PRO LEU THR MET GLN ASN ASN TYR ALA VAL ILE GLU THR SEQRES 8 A 235 GLU MET PRO ILE LYS LEU ASP ASP LYS THR THR LYS LYS SEQRES 9 A 235 ILE GLU LEU PRO SER LEU LEU TYR ASP PRO GLU PRO ASP SEQRES 10 A 235 THR SER VAL LEU VAL SER GLY TRP GLY SER THR ASN PHE SEQRES 11 A 235 LYS SER LEU GLU TYR SER GLY ASP LEU MET GLU ALA ASN SEQRES 12 A 235 PHE THR VAL VAL ASP ARG LYS SER CYS GLU GLU GLN TYR SEQRES 13 A 235 LYS GLN ILE GLU ALA ASP LYS TYR ILE TYR ASP GLY VAL SEQRES 14 A 235 PHE CYS ALA GLY GLY GLU TYR ASP GLU THR TYR ILE GLY SEQRES 15 A 235 TYR GLY ASP ALA GLY ASP PRO ALA VAL GLN ASN GLY THR SEQRES 16 A 235 LEU VAL GLY VAL ALA SER TYR ILE SER SER MET PRO SER SEQRES 17 A 235 GLU PHE PRO SER VAL PHE LEU ARG VAL GLY TYR TYR VAL SEQRES 18 A 235 LEU ASP ILE LYS ASP ILE ILE SER GLY LYS VAL LYS PRO SEQRES 19 A 235 GLN SEQRES 1 B 235 ILE ILE GLY GLY LYS LYS SER ASP ILE THR LYS GLU PRO SEQRES 2 B 235 TRP ALA VAL GLY VAL LEU VAL ASP GLU LYS PRO PHE CYS SEQRES 3 B 235 GLY GLY SER ILE LEU THR ALA ASN PHE VAL ILE THR ALA SEQRES 4 B 235 ALA GLN CYS VAL ASP GLY THR LYS PRO SER ASP ILE SER SEQRES 5 B 235 ILE HIS TYR GLY SER SER TYR ARG THR THR LYS GLY THR SEQRES 6 B 235 SER VAL MET ALA LYS LYS ILE TYR ILE VAL ARG TYR HIS SEQRES 7 B 235 PRO LEU THR MET GLN ASN ASN TYR ALA VAL ILE GLU THR SEQRES 8 B 235 GLU MET PRO ILE LYS LEU ASP ASP LYS THR THR LYS LYS SEQRES 9 B 235 ILE GLU LEU PRO SER LEU LEU TYR ASP PRO GLU PRO ASP SEQRES 10 B 235 THR SER VAL LEU VAL SER GLY TRP GLY SER THR ASN PHE SEQRES 11 B 235 LYS SER LEU GLU TYR SER GLY ASP LEU MET GLU ALA ASN SEQRES 12 B 235 PHE THR VAL VAL ASP ARG LYS SER CYS GLU GLU GLN TYR SEQRES 13 B 235 LYS GLN ILE GLU ALA ASP LYS TYR ILE TYR ASP GLY VAL SEQRES 14 B 235 PHE CYS ALA GLY GLY GLU TYR ASP GLU THR TYR ILE GLY SEQRES 15 B 235 TYR GLY ASP ALA GLY ASP PRO ALA VAL GLN ASN GLY THR SEQRES 16 B 235 LEU VAL GLY VAL ALA SER TYR ILE SER SER MET PRO SER SEQRES 17 B 235 GLU PHE PRO SER VAL PHE LEU ARG VAL GLY TYR TYR VAL SEQRES 18 B 235 LEU ASP ILE LYS ASP ILE ILE SER GLY LYS VAL LYS PRO SEQRES 19 B 235 GLN HET ZN A 236 1 HET ZN A 237 1 HET ZN A 238 1 HET ZN A 239 1 HET ZN A 240 1 HET ZN A 241 1 HET ZN A 242 1 HET ZN A 243 1 HET ZN B 236 1 HETNAM ZN ZINC ION FORMUL 3 ZN 9(ZN 2+) FORMUL 12 HOH *310(H2 O) HELIX 1 1 ALA A 39 ASP A 44 1 6 HELIX 2 2 LYS A 47 SER A 49 5 3 HELIX 3 3 ASP A 148 GLN A 158 1 11 HELIX 4 4 ILE A 159 GLU A 160 5 2 HELIX 5 5 ALA A 161 ILE A 165 5 5 HELIX 6 6 TYR A 220 SER A 229 1 10 HELIX 7 7 ALA B 39 ASP B 44 1 6 HELIX 8 8 LYS B 47 SER B 49 5 3 HELIX 9 9 ASP B 148 GLN B 158 1 11 HELIX 10 10 ILE B 159 GLU B 160 5 2 HELIX 11 11 ALA B 161 ILE B 165 5 5 HELIX 12 12 VAL B 217 SER B 229 1 13 SHEET 1 A 8 LYS A 5 LYS A 6 0 SHEET 2 A 8 MET A 140 VAL A 147 -1 O GLU A 141 N LYS A 5 SHEET 3 A 8 VAL A 169 ALA A 172 -1 O CYS A 171 N VAL A 147 SHEET 4 A 8 SER A 212 ARG A 216 -1 O PHE A 214 N PHE A 170 SHEET 5 A 8 THR A 195 ALA A 200 -1 N VAL A 199 O LEU A 215 SHEET 6 A 8 PRO A 189 GLN A 192 -1 N ALA A 190 O GLY A 198 SHEET 7 A 8 SER A 119 GLY A 124 -1 N LEU A 121 O VAL A 191 SHEET 8 A 8 MET A 140 VAL A 147 -1 O ALA A 142 N VAL A 122 SHEET 1 B 7 ALA A 15 VAL A 20 0 SHEET 2 B 7 CYS A 26 ILE A 30 -1 O CYS A 26 N VAL A 18 SHEET 3 B 7 PHE A 35 THR A 38 -1 O ILE A 37 N SER A 29 SHEET 4 B 7 ALA A 87 THR A 91 -1 O ILE A 89 N VAL A 36 SHEET 5 B 7 THR A 65 ILE A 74 -1 N LYS A 70 O GLU A 90 SHEET 6 B 7 ILE A 51 TYR A 55 -1 N ILE A 53 O VAL A 67 SHEET 7 B 7 ALA A 15 VAL A 20 -1 N LEU A 19 O SER A 52 SHEET 1 C 8 LYS B 5 LYS B 6 0 SHEET 2 C 8 MET B 140 VAL B 147 -1 O GLU B 141 N LYS B 5 SHEET 3 C 8 VAL B 169 GLY B 173 -1 O CYS B 171 N VAL B 147 SHEET 4 C 8 SER B 212 ARG B 216 -1 O PHE B 214 N PHE B 170 SHEET 5 C 8 THR B 195 ALA B 200 -1 N VAL B 199 O LEU B 215 SHEET 6 C 8 PRO B 189 GLN B 192 -1 N ALA B 190 O GLY B 198 SHEET 7 C 8 SER B 119 GLY B 124 -1 N LEU B 121 O VAL B 191 SHEET 8 C 8 MET B 140 VAL B 147 -1 O ALA B 142 N VAL B 122 SHEET 1 D 7 ALA B 15 VAL B 20 0 SHEET 2 D 7 CYS B 26 ILE B 30 -1 O CYS B 26 N VAL B 18 SHEET 3 D 7 PHE B 35 THR B 38 -1 O ILE B 37 N SER B 29 SHEET 4 D 7 ALA B 87 THR B 91 -1 O ILE B 89 N VAL B 36 SHEET 5 D 7 THR B 65 ILE B 74 -1 N LYS B 70 O GLU B 90 SHEET 6 D 7 ILE B 51 TYR B 55 -1 N ILE B 53 O VAL B 67 SHEET 7 D 7 ALA B 15 VAL B 20 -1 N LEU B 19 O SER B 52 SSBOND 1 CYS A 26 CYS A 42 1555 1555 2.03 SSBOND 2 CYS A 152 CYS A 171 1555 1555 2.06 SSBOND 3 CYS B 26 CYS B 42 1555 1555 2.02 SSBOND 4 CYS B 152 CYS B 171 1555 1555 2.54 LINK NE2 HIS A 78 ZN ZN A 238 1555 1555 2.18 LINK OD1 ASP A 167 ZN ZN A 236 1555 1555 1.98 LINK OE2 GLU A 209 ZN ZN A 239 1555 1555 2.20 LINK OD2 ASP A 223 ZN ZN A 240 1555 1555 1.92 LINK ZN ZN A 236 OD1 ASP B 167 1555 1555 2.03 LINK ZN ZN A 237 O HOH A 295 1555 1555 2.34 LINK ZN ZN A 238 O HOH A 332 1555 1555 2.09 LINK ZN ZN A 238 OD2 ASP B 223 1555 1555 1.92 LINK ZN ZN A 239 O HOH A 384 1555 1555 1.97 LINK ZN ZN A 240 O HOH A 303 1555 1555 1.94 LINK ZN ZN A 240 NE2 HIS B 78 1555 1555 2.14 LINK OE2 GLU B 153 ZN ZN B 236 1555 1555 2.09 SITE 1 AC1 4 ASP A 167 ZN A 241 HOH A 315 ASP B 167 SITE 1 AC2 3 GLU A 153 ZN A 241 HOH A 295 SITE 1 AC3 4 HIS A 78 ZN A 242 HOH A 332 ASP B 223 SITE 1 AC4 3 GLU A 178 GLU A 209 HOH A 384 SITE 1 AC5 4 ASP A 223 ZN A 243 HOH A 303 HIS B 78 SITE 1 AC6 2 ZN A 236 ZN A 237 SITE 1 AC7 4 HIS A 78 ASN A 84 ZN A 238 ASP B 223 SITE 1 AC8 4 ASP A 223 ZN A 240 HIS B 78 ASN B 84 SITE 1 AC9 2 HOH A 315 GLU B 153 CRYST1 133.159 133.159 83.706 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007510 0.004336 0.000000 0.00000 SCALE2 0.000000 0.008672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011947 0.00000