HEADER CELL ADHESION 28-APR-09 3H7X TITLE A TRANSITION FROM STRONG RIGHT-HANDED TO CANONICAL LEFT-HANDED TITLE 2 SUPERCOILING IN A CONSERVED COILED COIL SEGMENT OF TRIMERIC TITLE 3 AUTOTRANSPORTER ADHESINS - THE WILDTYPE STRUCTURE CAVEAT 3H7X THE C-N BONDS BETWEEN S302 AND H303 OF CHAIN A, AND L353 AND CAVEAT 2 3H7X A354 OF CHAIN E LIE OUTSIDE OF THE ACCEPTED RANGE FOR THE CAVEAT 3 3H7X PEPTIDE BOND (1.30-1.45 A). COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESIN YADA; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: YADA STALK DOMAIN (RESIDUES 299-362); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: YADA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS YADA, ADHESIN, ADHESION, COILED COIL, CELL ADHESION, CELL MEMBRANE, KEYWDS 2 CELL OUTER MEMBRANE, MEMBRANE, PLASMID, VIRULENCE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,B.HERNANDEZ-ALVAREZ,A.N.LUPAS REVDAT 5 03-APR-24 3H7X 1 REMARK REVDAT 4 21-FEB-24 3H7X 1 REMARK REVDAT 3 01-NOV-17 3H7X 1 REMARK REVDAT 2 05-MAY-10 3H7X 1 JRNL CRYST1 REVDAT 1 31-MAR-10 3H7X 0 JRNL AUTH B.H.ALVAREZ,M.GRUBER,A.URSINUS,S.DUNIN-HORKAWICZ,A.N.LUPAS, JRNL AUTH 2 K.ZETH JRNL TITL A TRANSITION FROM STRONG RIGHT-HANDED TO CANONICAL JRNL TITL 2 LEFT-HANDED SUPERCOILING IN A CONSERVED COILED-COIL SEGMENT JRNL TITL 3 OF TRIMERIC AUTOTRANSPORTER ADHESINS. JRNL REF J.STRUCT.BIOL. V. 170 236 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20178846 JRNL DOI 10.1016/J.JSB.2010.02.009 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 21317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.53000 REMARK 3 B22 (A**2) : 41.01000 REMARK 3 B33 (A**2) : -22.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.893 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2661 ; 0.027 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3597 ; 2.454 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 7.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;26.695 ;24.104 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;24.255 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.177 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.182 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1965 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1628 ; 0.947 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2641 ; 1.645 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1033 ; 3.199 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 941 ; 4.903 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 341 ; 0.15 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 341 ; 0.14 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 341 ; 0.14 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 341 ; 0.15 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 E (A): 341 ; 0.14 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 F (A): 341 ; 0.14 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 341 ; 0.39 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 341 ; 0.37 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 341 ; 0.38 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 341 ; 0.35 ; 0.50 REMARK 3 TIGHT THERMAL 1 E (A**2): 341 ; 0.37 ; 0.50 REMARK 3 TIGHT THERMAL 1 F (A**2): 341 ; 0.34 ; 0.50 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.523 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : 0.19700 REMARK 200 FOR SHELL : 3.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: MODEL FROM SAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.77650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 299 REMARK 465 LYS A 300 REMARK 465 ALA A 358 REMARK 465 LEU A 359 REMARK 465 ASN A 360 REMARK 465 SER A 361 REMARK 465 LEU A 362 REMARK 465 SER B 299 REMARK 465 LYS B 300 REMARK 465 SER B 301 REMARK 465 SER B 302 REMARK 465 ALA B 354 REMARK 465 SER B 355 REMARK 465 SER B 356 REMARK 465 ALA B 357 REMARK 465 ALA B 358 REMARK 465 LEU B 359 REMARK 465 ASN B 360 REMARK 465 SER B 361 REMARK 465 LEU B 362 REMARK 465 SER C 299 REMARK 465 LYS C 300 REMARK 465 SER C 301 REMARK 465 SER C 302 REMARK 465 HIS C 303 REMARK 465 SER C 355 REMARK 465 SER C 356 REMARK 465 ALA C 357 REMARK 465 ALA C 358 REMARK 465 LEU C 359 REMARK 465 ASN C 360 REMARK 465 SER C 361 REMARK 465 LEU C 362 REMARK 465 SER D 299 REMARK 465 LYS D 300 REMARK 465 SER D 301 REMARK 465 SER D 302 REMARK 465 HIS D 303 REMARK 465 ALA D 358 REMARK 465 LEU D 359 REMARK 465 ASN D 360 REMARK 465 SER D 361 REMARK 465 LEU D 362 REMARK 465 SER E 299 REMARK 465 LYS E 300 REMARK 465 SER E 301 REMARK 465 SER E 355 REMARK 465 SER E 356 REMARK 465 ALA E 357 REMARK 465 ALA E 358 REMARK 465 LEU E 359 REMARK 465 ASN E 360 REMARK 465 SER E 361 REMARK 465 LEU E 362 REMARK 465 SER F 299 REMARK 465 LYS F 300 REMARK 465 SER F 301 REMARK 465 SER F 355 REMARK 465 SER F 356 REMARK 465 ALA F 357 REMARK 465 ALA F 358 REMARK 465 LEU F 359 REMARK 465 ASN F 360 REMARK 465 SER F 361 REMARK 465 LEU F 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 303 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 346 CG OD1 OD2 REMARK 470 HIS B 303 CG ND1 CD2 CE1 NE2 REMARK 470 SER E 302 OG REMARK 470 HIS E 303 CG ND1 CD2 CE1 NE2 REMARK 470 THR E 304 OG1 CG2 REMARK 470 SER F 302 OG REMARK 470 HIS F 303 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 331 O HOH B 8 1.75 REMARK 500 CG2 THR F 315 O HOH F 113 1.80 REMARK 500 NH2 ARG A 341 OD2 ASP C 346 1.86 REMARK 500 OE1 GLU D 326 O HOH D 73 1.87 REMARK 500 NE2 GLN E 337 O HOH E 62 1.94 REMARK 500 O LEU E 338 O HOH E 104 1.95 REMARK 500 OD1 ASP D 339 NH1 ARG E 341 1.97 REMARK 500 OD1 ASN E 309 O HOH E 81 1.97 REMARK 500 O THR F 307 O HOH F 106 1.99 REMARK 500 O THR A 307 O HOH A 80 2.02 REMARK 500 CB VAL D 316 O HOH D 112 2.06 REMARK 500 OG SER C 317 O HOH C 75 2.06 REMARK 500 O HOH F 63 O HOH F 66 2.07 REMARK 500 CD GLU D 326 O HOH D 73 2.09 REMARK 500 OD1 ASN B 318 O HOH B 78 2.11 REMARK 500 OG1 THR A 331 O HOH A 24 2.15 REMARK 500 NH2 ARG A 341 OD1 ASP C 343 2.17 REMARK 500 OG1 THR B 331 O HOH A 24 2.17 REMARK 500 OH TYR A 311 OD1 ASP C 313 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 306 O HOH E 34 2555 1.30 REMARK 500 NH1 ARG C 325 OD2 ASP D 339 2556 1.44 REMARK 500 NH2 ARG A 325 OD1 ASN F 340 2656 1.58 REMARK 500 CZ ARG A 325 OD1 ASN F 340 2656 1.73 REMARK 500 OE1 GLN C 329 CD2 HIS D 336 2556 1.75 REMARK 500 NH1 ARG C 325 O HOH D 70 2556 1.82 REMARK 500 OD1 ASP A 339 O HOH F 55 2656 1.83 REMARK 500 OD1 ASN C 340 NE ARG D 325 2556 1.83 REMARK 500 NE ARG A 325 OD1 ASN F 340 2656 1.89 REMARK 500 OD2 ASP C 339 NH2 ARG D 325 2556 1.93 REMARK 500 CD2 HIS A 336 OE1 GLN F 329 2656 2.01 REMARK 500 CZ ARG C 325 OD2 ASP D 339 2556 2.01 REMARK 500 CB ASP C 350 O HOH B 96 1556 2.08 REMARK 500 CE LYS B 306 NE2 GLN E 329 2555 2.08 REMARK 500 OD2 ASP C 339 CZ ARG D 325 2556 2.09 REMARK 500 CE LYS B 306 O HOH E 34 2555 2.15 REMARK 500 NZ LYS D 351 O HOH B 100 2546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 302 C SER A 302 O 0.152 REMARK 500 SER A 302 C HIS A 303 N -0.241 REMARK 500 VAL B 314 CB VAL B 314 CG1 -0.142 REMARK 500 SER D 327 CB SER D 327 OG 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 342 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 LYS B 334 CD - CE - NZ ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP C 313 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP F 339 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP F 339 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 302 -129.49 56.49 REMARK 500 HIS A 303 -7.41 -57.50 REMARK 500 THR A 304 32.25 -83.38 REMARK 500 SER A 356 -106.98 21.83 REMARK 500 SER D 355 30.05 -61.23 REMARK 500 THR E 304 47.96 -178.80 REMARK 500 THR F 304 40.07 -145.53 REMARK 500 ARG F 348 -61.46 -29.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 302 -16.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H7Z RELATED DB: PDB DBREF 3H7X A 299 362 UNP P0C2W0 YADA2_YEREN 299 362 DBREF 3H7X B 299 362 UNP P0C2W0 YADA2_YEREN 299 362 DBREF 3H7X C 299 362 UNP P0C2W0 YADA2_YEREN 299 362 DBREF 3H7X D 299 362 UNP P0C2W0 YADA2_YEREN 299 362 DBREF 3H7X E 299 362 UNP P0C2W0 YADA2_YEREN 299 362 DBREF 3H7X F 299 362 UNP P0C2W0 YADA2_YEREN 299 362 SEQRES 1 A 64 SER LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR SEQRES 2 A 64 THR ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE SEQRES 3 A 64 ARG GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN SEQRES 4 A 64 LEU ASP ASN ARG LEU ASP LYS LEU ASP THR ARG VAL ASP SEQRES 5 A 64 LYS GLY LEU ALA SER SER ALA ALA LEU ASN SER LEU SEQRES 1 B 64 SER LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR SEQRES 2 B 64 THR ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE SEQRES 3 B 64 ARG GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN SEQRES 4 B 64 LEU ASP ASN ARG LEU ASP LYS LEU ASP THR ARG VAL ASP SEQRES 5 B 64 LYS GLY LEU ALA SER SER ALA ALA LEU ASN SER LEU SEQRES 1 C 64 SER LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR SEQRES 2 C 64 THR ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE SEQRES 3 C 64 ARG GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN SEQRES 4 C 64 LEU ASP ASN ARG LEU ASP LYS LEU ASP THR ARG VAL ASP SEQRES 5 C 64 LYS GLY LEU ALA SER SER ALA ALA LEU ASN SER LEU SEQRES 1 D 64 SER LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR SEQRES 2 D 64 THR ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE SEQRES 3 D 64 ARG GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN SEQRES 4 D 64 LEU ASP ASN ARG LEU ASP LYS LEU ASP THR ARG VAL ASP SEQRES 5 D 64 LYS GLY LEU ALA SER SER ALA ALA LEU ASN SER LEU SEQRES 1 E 64 SER LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR SEQRES 2 E 64 THR ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE SEQRES 3 E 64 ARG GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN SEQRES 4 E 64 LEU ASP ASN ARG LEU ASP LYS LEU ASP THR ARG VAL ASP SEQRES 5 E 64 LYS GLY LEU ALA SER SER ALA ALA LEU ASN SER LEU SEQRES 1 F 64 SER LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR SEQRES 2 F 64 THR ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE SEQRES 3 F 64 ARG GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN SEQRES 4 F 64 LEU ASP ASN ARG LEU ASP LYS LEU ASP THR ARG VAL ASP SEQRES 5 F 64 LYS GLY LEU ALA SER SER ALA ALA LEU ASN SER LEU FORMUL 7 HOH *101(H2 O) HELIX 1 1 THR A 304 SER A 355 1 52 HELIX 2 2 THR B 304 GLY B 352 1 49 HELIX 3 3 THR C 304 GLY C 352 1 49 HELIX 4 4 THR D 304 SER D 355 1 52 HELIX 5 5 THR E 304 GLY E 352 1 49 HELIX 6 6 THR F 304 GLY F 352 1 49 CRYST1 39.825 105.553 44.706 90.00 90.02 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022368 0.00000