HEADER ENDOCYTOSIS 28-APR-09 3H85 TITLE MOLECULAR BASIS FOR THE ASSOCIATION OF PIPKI GAMMA-P90 WITH THE TITLE 2 CLATHRIN ADAPTOR AP-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-2 COMPLEX SUBUNIT MU-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-435; COMPND 5 SYNONYM: MU2-ADAPTIN, AP-2 MU-2 CHAIN, PLASMA MEMBRANE ADAPTOR AP-2 COMPND 6 50 KDA PROTEIN, CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 MEDIUM CHAIN, COMPND 7 CLATHRIN COAT ASSEMBLY PROTEIN AP50, CLATHRIN COAT-ASSOCIATED PROTEIN COMPND 8 AP50; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE TYPE-1 GAMMA; COMPND 12 CHAIN: P; COMPND 13 FRAGMENT: UNP RESIDUES 646-653; COMPND 14 SYNONYM: PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE TYPE I GAMMA, COMPND 15 PTDINS(4)P-5-KINASE GAMMA, PTDINSPKIGAMMA, PIP5KIGAMMA; COMPND 16 EC: 2.7.1.68; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: AP2M1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS PHOSPHATIDYLINOSITOL 4, 5-BISPHOSPHATE, CLATHRIN, ADAPTOR COMPLEX AP- KEYWDS 2 2, ENDOCYTOSIS, CELL MEMBRANE, COATED PIT, LIPID-BINDING, MEMBRANE, KEYWDS 3 PHOSPHOPROTEIN, DISEASE MUTATION, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VAHEDI-FARIDI,N.KAHLFELDT,J.G.SCHAEFER,V.HAUCKE REVDAT 4 01-NOV-23 3H85 1 REMARK SEQADV REVDAT 3 01-NOV-17 3H85 1 REMARK REVDAT 2 02-FEB-10 3H85 1 JRNL REVDAT 1 24-NOV-09 3H85 0 JRNL AUTH N.KAHLFELDT,A.VAHEDI-FARIDI,S.J.KOO,J.G.SCHAFER,G.KRAINER, JRNL AUTH 2 S.KELLER,W.SAENGER,M.KRAUSS,V.HAUCKE JRNL TITL MOLECULAR BASIS FOR ASSOCIATION OF PIPKI GAMMA-P90 WITH JRNL TITL 2 CLATHRIN ADAPTOR AP-2. JRNL REF J.BIOL.CHEM. V. 285 2734 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 19903820 JRNL DOI 10.1074/JBC.M109.074906 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 19070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 645 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.5070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2110 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.201 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2155 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2902 ; 1.151 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 6.909 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;32.122 ;22.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;17.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.393 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1571 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 0.553 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2129 ; 1.047 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 850 ; 1.225 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 2.251 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9650 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM FORMATE, 50MM NICL, 0.1M REMARK 280 NA-ACETATE, PH6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.84867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.69733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.84867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.69733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 SER A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 SER A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 LEU A 150 REMARK 465 VAL A 151 REMARK 465 PRO A 152 REMARK 465 ARG A 153 REMARK 465 GLY A 154 REMARK 465 SER A 155 REMARK 465 HIS A 156 REMARK 465 MET A 157 REMARK 465 GLN A 158 REMARK 465 VAL A 221 REMARK 465 ILE A 222 REMARK 465 GLU A 223 REMARK 465 LYS A 224 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 GLY A 228 REMARK 465 THR A 229 REMARK 465 ALA A 230 REMARK 465 ASP A 231 REMARK 465 GLU A 232 REMARK 465 THR A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 SER A 236 REMARK 465 GLY A 237 REMARK 465 LYS A 238 REMARK 465 GLN A 239 REMARK 465 LYS A 256 REMARK 465 PHE A 257 REMARK 465 ASP A 258 REMARK 465 SER A 259 REMARK 465 GLU A 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 170 68.57 80.14 REMARK 500 ASN A 217 49.37 -79.85 REMARK 500 GLN A 250 63.61 -62.54 REMARK 500 CYS A 251 -16.92 -152.80 REMARK 500 LEU A 254 -86.66 -14.70 REMARK 500 ASN A 310 69.06 -103.71 REMARK 500 ASN A 329 45.74 -85.82 REMARK 500 ASN A 376 98.37 -60.54 REMARK 500 ASP A 377 -2.33 -57.09 REMARK 500 LYS A 378 -98.19 -69.52 REMARK 500 TRP P 2 -169.53 -115.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H1Z RELATED DB: PDB DBREF 3H85 A 158 435 UNP P84092 AP2M1_RAT 158 435 DBREF 3H85 P 1 8 UNP O60331 PI51C_HUMAN 646 653 SEQADV 3H85 MET A 137 UNP P84092 EXPRESSION TAG SEQADV 3H85 GLY A 138 UNP P84092 EXPRESSION TAG SEQADV 3H85 SER A 139 UNP P84092 EXPRESSION TAG SEQADV 3H85 SER A 140 UNP P84092 EXPRESSION TAG SEQADV 3H85 HIS A 141 UNP P84092 EXPRESSION TAG SEQADV 3H85 HIS A 142 UNP P84092 EXPRESSION TAG SEQADV 3H85 HIS A 143 UNP P84092 EXPRESSION TAG SEQADV 3H85 HIS A 144 UNP P84092 EXPRESSION TAG SEQADV 3H85 HIS A 145 UNP P84092 EXPRESSION TAG SEQADV 3H85 HIS A 146 UNP P84092 EXPRESSION TAG SEQADV 3H85 SER A 147 UNP P84092 EXPRESSION TAG SEQADV 3H85 SER A 148 UNP P84092 EXPRESSION TAG SEQADV 3H85 GLY A 149 UNP P84092 EXPRESSION TAG SEQADV 3H85 LEU A 150 UNP P84092 EXPRESSION TAG SEQADV 3H85 VAL A 151 UNP P84092 EXPRESSION TAG SEQADV 3H85 PRO A 152 UNP P84092 EXPRESSION TAG SEQADV 3H85 ARG A 153 UNP P84092 EXPRESSION TAG SEQADV 3H85 GLY A 154 UNP P84092 EXPRESSION TAG SEQADV 3H85 SER A 155 UNP P84092 EXPRESSION TAG SEQADV 3H85 HIS A 156 UNP P84092 EXPRESSION TAG SEQADV 3H85 MET A 157 UNP P84092 EXPRESSION TAG SEQRES 1 A 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 299 LEU VAL PRO ARG GLY SER HIS MET GLN ILE GLY TRP ARG SEQRES 3 A 299 ARG GLU GLY ILE LYS TYR ARG ARG ASN GLU LEU PHE LEU SEQRES 4 A 299 ASP VAL LEU GLU SER VAL ASN LEU LEU MET SER PRO GLN SEQRES 5 A 299 GLY GLN VAL LEU SER ALA HIS VAL SER GLY ARG VAL VAL SEQRES 6 A 299 MET LYS SER TYR LEU SER GLY MET PRO GLU CYS LYS PHE SEQRES 7 A 299 GLY MET ASN ASP LYS ILE VAL ILE GLU LYS GLN GLY LYS SEQRES 8 A 299 GLY THR ALA ASP GLU THR SER LYS SER GLY LYS GLN SER SEQRES 9 A 299 ILE ALA ILE ASP ASP CYS THR PHE HIS GLN CYS VAL ARG SEQRES 10 A 299 LEU SER LYS PHE ASP SER GLU ARG SER ILE SER PHE ILE SEQRES 11 A 299 PRO PRO ASP GLY GLU PHE GLU LEU MET ARG TYR ARG THR SEQRES 12 A 299 THR LYS ASP ILE ILE LEU PRO PHE ARG VAL ILE PRO LEU SEQRES 13 A 299 VAL ARG GLU VAL GLY ARG THR LYS LEU GLU VAL LYS VAL SEQRES 14 A 299 VAL ILE LYS SER ASN PHE LYS PRO SER LEU LEU ALA GLN SEQRES 15 A 299 LYS ILE GLU VAL ARG ILE PRO THR PRO LEU ASN THR SER SEQRES 16 A 299 GLY VAL GLN VAL ILE CYS MET LYS GLY LYS ALA LYS TYR SEQRES 17 A 299 LYS ALA SER GLU ASN ALA ILE VAL TRP LYS ILE LYS ARG SEQRES 18 A 299 MET ALA GLY MET LYS GLU SER GLN ILE SER ALA GLU ILE SEQRES 19 A 299 GLU LEU LEU PRO THR ASN ASP LYS LYS LYS TRP ALA ARG SEQRES 20 A 299 PRO PRO ILE SER MET ASN PHE GLU VAL PRO PHE ALA PRO SEQRES 21 A 299 SER GLY LEU LYS VAL ARG TYR LEU LYS VAL PHE GLU PRO SEQRES 22 A 299 LYS LEU ASN TYR SER ASP HIS ASP VAL ILE LYS TRP VAL SEQRES 23 A 299 ARG TYR ILE GLY ARG SER GLY ILE TYR GLU THR ARG CYS SEQRES 1 P 8 SER TRP VAL TYR SER PRO LEU HIS HET NI A 1 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI NI 2+ FORMUL 4 HOH *31(H2 O) HELIX 1 1 ALA A 346 GLU A 348 5 3 HELIX 2 2 SER A 414 VAL A 418 5 5 SHEET 1 A 9 ASP A 245 PHE A 248 0 SHEET 2 A 9 GLY A 270 THR A 279 -1 O ARG A 276 N THR A 247 SHEET 3 A 9 VAL A 191 TYR A 205 -1 N SER A 204 O GLY A 270 SHEET 4 A 9 GLU A 172 MET A 185 -1 N ASP A 176 O VAL A 201 SHEET 5 A 9 ILE A 419 THR A 433 1 O ARG A 427 N GLU A 179 SHEET 6 A 9 ILE A 386 VAL A 392 -1 N VAL A 392 O GLY A 426 SHEET 7 A 9 LEU A 316 PRO A 325 -1 N ARG A 323 O SER A 387 SHEET 8 A 9 ALA A 350 ALA A 359 -1 O MET A 358 N ALA A 317 SHEET 9 A 9 LYS A 341 LYS A 345 -1 N LYS A 341 O LYS A 354 SHEET 1 B 6 ASP A 245 PHE A 248 0 SHEET 2 B 6 GLY A 270 THR A 279 -1 O ARG A 276 N THR A 247 SHEET 3 B 6 VAL A 191 TYR A 205 -1 N SER A 204 O GLY A 270 SHEET 4 B 6 GLU A 172 MET A 185 -1 N ASP A 176 O VAL A 201 SHEET 5 B 6 ILE A 419 THR A 433 1 O ARG A 427 N GLU A 179 SHEET 6 B 6 SER P 5 PRO P 6 -1 O SER P 5 N VAL A 422 SHEET 1 C 4 VAL A 252 ARG A 253 0 SHEET 2 C 4 ILE A 263 PHE A 265 -1 O SER A 264 N ARG A 253 SHEET 3 C 4 GLU A 211 MET A 216 -1 N CYS A 212 O PHE A 265 SHEET 4 C 4 VAL A 401 PHE A 407 -1 O PHE A 407 N GLU A 211 SHEET 1 D 4 PHE A 287 VAL A 296 0 SHEET 2 D 4 LYS A 300 SER A 309 -1 O VAL A 306 N ILE A 290 SHEET 3 D 4 GLU A 363 LEU A 372 -1 O ILE A 370 N LEU A 301 SHEET 4 D 4 THR A 330 ILE A 336 -1 N SER A 331 O GLU A 371 SITE 1 AC1 2 LYS A 203 TYR A 205 CRYST1 125.301 125.301 74.546 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007981 0.004608 0.000000 0.00000 SCALE2 0.000000 0.009215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013415 0.00000