data_3H8K # _entry.id 3H8K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3H8K pdb_00003h8k 10.2210/pdb3h8k/pdb RCSB RCSB052827 ? ? WWPDB D_1000052827 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FSH 'The same complex at 2.76-A resolution' unspecified PDB 2CYX 'Crystal structure of Ube2g2.' unspecified # _pdbx_database_status.entry_id 3H8K _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-29 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kalathur, R.C.' 1 'Das, R.' 2 'Li, J.' 3 'Byrd, R.A.' 4 'Ji, X.' 5 # _citation.id primary _citation.title 'Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 34 _citation.page_first 674 _citation.page_last 685 _citation.year 2009 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19560420 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2009.05.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Das, R.' 1 ? primary 'Mariano, J.' 2 ? primary 'Tsai, Y.C.' 3 ? primary 'Kalathur, R.C.' 4 ? primary 'Kostova, Z.' 5 ? primary 'Li, J.' 6 ? primary 'Tarasov, S.G.' 7 ? primary 'McFeeters, R.L.' 8 ? primary 'Altieri, A.S.' 9 ? primary 'Ji, X.' 10 ? primary 'Byrd, R.A.' 11 ? primary 'Weissman, A.M.' 12 ? # _cell.length_a 48.92 _cell.length_b 60.15 _cell.length_c 61.64 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 3H8K _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3H8K _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin-conjugating enzyme E2 G2' 18451.062 1 6.3.2.19 ? ? ? 2 polymer man 'Autocrine motility factor receptor, isoform 2' 3552.120 1 6.3.2.- K573W 'Residues 573-600' ? 3 water nat water 18.015 163 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Ubiquitin-protein ligase G2, Ubiquitin carrier protein G2' 2 'AMF receptor, isoform 2, gp78, RING finger protein 45' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK SLGL ; ;AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK SLGL ; A ? 2 'polypeptide(L)' no no WSADERQRMLVQRKDELLQQARKRFLNK WSADERQRMLVQRKDELLQQARKRFLNK B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLY n 1 3 THR n 1 4 ALA n 1 5 LEU n 1 6 LYS n 1 7 ARG n 1 8 LEU n 1 9 MET n 1 10 ALA n 1 11 GLU n 1 12 TYR n 1 13 LYS n 1 14 GLN n 1 15 LEU n 1 16 THR n 1 17 LEU n 1 18 ASN n 1 19 PRO n 1 20 PRO n 1 21 GLU n 1 22 GLY n 1 23 ILE n 1 24 VAL n 1 25 ALA n 1 26 GLY n 1 27 PRO n 1 28 MET n 1 29 ASN n 1 30 GLU n 1 31 GLU n 1 32 ASN n 1 33 PHE n 1 34 PHE n 1 35 GLU n 1 36 TRP n 1 37 GLU n 1 38 ALA n 1 39 LEU n 1 40 ILE n 1 41 MET n 1 42 GLY n 1 43 PRO n 1 44 GLU n 1 45 ASP n 1 46 THR n 1 47 CYS n 1 48 PHE n 1 49 GLU n 1 50 PHE n 1 51 GLY n 1 52 VAL n 1 53 PHE n 1 54 PRO n 1 55 ALA n 1 56 ILE n 1 57 LEU n 1 58 SER n 1 59 PHE n 1 60 PRO n 1 61 LEU n 1 62 ASP n 1 63 TYR n 1 64 PRO n 1 65 LEU n 1 66 SER n 1 67 PRO n 1 68 PRO n 1 69 LYS n 1 70 MET n 1 71 ARG n 1 72 PHE n 1 73 THR n 1 74 CYS n 1 75 GLU n 1 76 MET n 1 77 PHE n 1 78 HIS n 1 79 PRO n 1 80 ASN n 1 81 ILE n 1 82 TYR n 1 83 PRO n 1 84 ASP n 1 85 GLY n 1 86 ARG n 1 87 VAL n 1 88 CYS n 1 89 ILE n 1 90 SER n 1 91 ILE n 1 92 LEU n 1 93 HIS n 1 94 ALA n 1 95 PRO n 1 96 GLY n 1 97 ASP n 1 98 ASP n 1 99 PRO n 1 100 MET n 1 101 GLY n 1 102 TYR n 1 103 GLU n 1 104 SER n 1 105 SER n 1 106 ALA n 1 107 GLU n 1 108 ARG n 1 109 TRP n 1 110 SER n 1 111 PRO n 1 112 VAL n 1 113 GLN n 1 114 SER n 1 115 VAL n 1 116 GLU n 1 117 LYS n 1 118 ILE n 1 119 LEU n 1 120 LEU n 1 121 SER n 1 122 VAL n 1 123 VAL n 1 124 SER n 1 125 MET n 1 126 LEU n 1 127 ALA n 1 128 GLU n 1 129 PRO n 1 130 ASN n 1 131 ASP n 1 132 GLU n 1 133 SER n 1 134 GLY n 1 135 ALA n 1 136 ASN n 1 137 VAL n 1 138 ASP n 1 139 ALA n 1 140 SER n 1 141 LYS n 1 142 MET n 1 143 TRP n 1 144 ARG n 1 145 ASP n 1 146 ASP n 1 147 ARG n 1 148 GLU n 1 149 GLN n 1 150 PHE n 1 151 TYR n 1 152 LYS n 1 153 ILE n 1 154 ALA n 1 155 LYS n 1 156 GLN n 1 157 ILE n 1 158 VAL n 1 159 GLN n 1 160 LYS n 1 161 SER n 1 162 LEU n 1 163 GLY n 1 164 LEU n 2 1 TRP n 2 2 SER n 2 3 ALA n 2 4 ASP n 2 5 GLU n 2 6 ARG n 2 7 GLN n 2 8 ARG n 2 9 MET n 2 10 LEU n 2 11 VAL n 2 12 GLN n 2 13 ARG n 2 14 LYS n 2 15 ASP n 2 16 GLU n 2 17 LEU n 2 18 LEU n 2 19 GLN n 2 20 GLN n 2 21 ALA n 2 22 ARG n 2 23 LYS n 2 24 ARG n 2 25 PHE n 2 26 LEU n 2 27 ASN n 2 28 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? UBE2G2 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? pET3a ? ? 2 1 sample ? ? ? human ? 'AMFR, RNF45' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? pET3a ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UB2G2_HUMAN P60604 1 ;AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK SLGL ; 2 ? 2 UNP AMFR2_HUMAN Q9UKV5 2 KSADERQRMLVQRKDELLQQARKRFLNK 573 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3H8K A 1 ? 164 ? P60604 2 ? 165 ? 2 165 2 2 3H8K B 1 ? 28 ? Q9UKV5 573 ? 600 ? 573 600 # _struct_ref_seq_dif.align_id 2 _struct_ref_seq_dif.pdbx_pdb_id_code 3H8K _struct_ref_seq_dif.mon_id TRP _struct_ref_seq_dif.pdbx_pdb_strand_id B _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9UKV5 _struct_ref_seq_dif.db_mon_id LYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 573 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 573 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3H8K _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details 'PEG 3350, 100 mM Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MAR300 _diffrn_detector.pdbx_collection_date 2008-07-21 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 220' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 3H8K _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 50.000 _reflns.number_obs 16657 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_netI_over_sigmaI 22.381 _reflns.pdbx_chi_squared 1.051 _reflns.pdbx_redundancy 6.400 _reflns.percent_possible_obs 95.400 _reflns.observed_criterion_sigma_F -6.0 _reflns.observed_criterion_sigma_I -3.0 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 21.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.437 _reflns_shell.meanI_over_sigI_obs 2.74 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.959 _reflns_shell.pdbx_redundancy 4.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1272 _reflns_shell.percent_possible_all 74.20 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3H8K _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 43.048 _refine.pdbx_ls_sigma_F 0.12 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 90.730 _refine.ls_number_reflns_obs 15822 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 15822 _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_R_work 0.193 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.242 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.940 _refine.ls_number_reflns_R_free 1573 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 34.205 _refine.solvent_model_param_bsol 46.284 _refine.solvent_model_param_ksol 0.349 _refine.pdbx_isotropic_thermal_model Isotropic _refine.aniso_B[1][1] 10.605 _refine.aniso_B[2][2] -4.214 _refine.aniso_B[3][3] -6.390 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.270 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 2CYX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.809 _refine.B_iso_max 97.34 _refine.B_iso_min 10.88 _refine.occupancy_max 1.00 _refine.occupancy_min 0.21 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3H8K _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1543 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 1706 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 43.048 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 1623 0.005 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 2207 0.921 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 232 0.066 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 294 0.005 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 629 15.157 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.8 1.864 10 62.000 951 . 0.231 0.275 . 102 . 1053 1053 . 'X-RAY DIFFRACTION' 1.864 1.939 10 75.000 1162 . 0.243 0.318 . 129 . 1291 1291 . 'X-RAY DIFFRACTION' 1.939 2.027 10 87.000 1337 . 0.226 0.309 . 155 . 1492 1492 . 'X-RAY DIFFRACTION' 2.027 2.134 10 93.000 1452 . 0.204 0.241 . 158 . 1610 1610 . 'X-RAY DIFFRACTION' 2.134 2.267 10 96.000 1477 . 0.195 0.257 . 159 . 1636 1636 . 'X-RAY DIFFRACTION' 2.267 2.442 10 97.000 1500 . 0.209 0.250 . 170 . 1670 1670 . 'X-RAY DIFFRACTION' 2.442 2.688 10 98.000 1541 . 0.212 0.276 . 167 . 1708 1708 . 'X-RAY DIFFRACTION' 2.688 3.077 10 99.000 1560 . 0.203 0.265 . 175 . 1735 1735 . 'X-RAY DIFFRACTION' 3.077 3.876 10 100.000 1592 . 0.181 0.238 . 171 . 1763 1763 . 'X-RAY DIFFRACTION' 3.876 43.061 10 100.000 1677 . 0.167 0.194 . 187 . 1864 1864 . 'X-RAY DIFFRACTION' # _struct.entry_id 3H8K _struct.title 'Crystal structure of Ube2g2 complxed with the G2BR domain of gp78 at 1.8-A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3H8K _struct_keywords.text ;alpha beta, all alpha, Ligase, Ubl conjugation pathway, Endoplasmic reticulum, Membrane, Metal-binding, Phosphoprotein, Receptor, Transmembrane, Zinc-finger ; _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 2 ? ASN A 18 ? GLY A 3 ASN A 19 1 ? 17 HELX_P HELX_P2 2 ILE A 89 ? HIS A 93 ? ILE A 90 HIS A 94 5 ? 5 HELX_P HELX_P3 3 SER A 114 ? GLU A 128 ? SER A 115 GLU A 129 1 ? 15 HELX_P HELX_P4 4 ASN A 136 ? ASP A 146 ? ASN A 137 ASP A 147 1 ? 11 HELX_P HELX_P5 5 ASP A 146 ? GLY A 163 ? ASP A 147 GLY A 164 1 ? 18 HELX_P HELX_P6 6 SER B 2 ? LYS B 28 ? SER B 574 LYS B 600 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 63 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 64 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 64 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 65 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 8.29 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 23 ? PRO A 27 ? ILE A 24 PRO A 28 A 2 GLU A 35 ? MET A 41 ? GLU A 36 MET A 42 A 3 VAL A 52 ? SER A 58 ? VAL A 53 SER A 59 A 4 LYS A 69 ? PHE A 72 ? LYS A 70 PHE A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 24 ? N VAL A 25 O LEU A 39 ? O LEU A 40 A 2 3 N TRP A 36 ? N TRP A 37 O LEU A 57 ? O LEU A 58 A 3 4 N ILE A 56 ? N ILE A 57 O ARG A 71 ? O ARG A 72 # _atom_sites.entry_id 3H8K _atom_sites.fract_transf_matrix[1][1] 0.020443 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016625 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016224 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 GLY 2 3 3 GLY GLY A . n A 1 3 THR 3 4 4 THR THR A . n A 1 4 ALA 4 5 5 ALA ALA A . n A 1 5 LEU 5 6 6 LEU LEU A . n A 1 6 LYS 6 7 7 LYS LYS A . n A 1 7 ARG 7 8 8 ARG ARG A . n A 1 8 LEU 8 9 9 LEU LEU A . n A 1 9 MET 9 10 10 MET MET A . n A 1 10 ALA 10 11 11 ALA ALA A . n A 1 11 GLU 11 12 12 GLU GLU A . n A 1 12 TYR 12 13 13 TYR TYR A . n A 1 13 LYS 13 14 14 LYS LYS A . n A 1 14 GLN 14 15 15 GLN GLN A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 THR 16 17 17 THR THR A . n A 1 17 LEU 17 18 18 LEU LEU A . n A 1 18 ASN 18 19 19 ASN ASN A . n A 1 19 PRO 19 20 20 PRO PRO A . n A 1 20 PRO 20 21 21 PRO PRO A . n A 1 21 GLU 21 22 22 GLU GLU A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 ILE 23 24 24 ILE ILE A . n A 1 24 VAL 24 25 25 VAL VAL A . n A 1 25 ALA 25 26 26 ALA ALA A . n A 1 26 GLY 26 27 27 GLY GLY A . n A 1 27 PRO 27 28 28 PRO PRO A . n A 1 28 MET 28 29 29 MET MET A . n A 1 29 ASN 29 30 30 ASN ASN A . n A 1 30 GLU 30 31 31 GLU GLU A . n A 1 31 GLU 31 32 32 GLU GLU A . n A 1 32 ASN 32 33 33 ASN ASN A . n A 1 33 PHE 33 34 34 PHE PHE A . n A 1 34 PHE 34 35 35 PHE PHE A . n A 1 35 GLU 35 36 36 GLU GLU A . n A 1 36 TRP 36 37 37 TRP TRP A . n A 1 37 GLU 37 38 38 GLU GLU A . n A 1 38 ALA 38 39 39 ALA ALA A . n A 1 39 LEU 39 40 40 LEU LEU A . n A 1 40 ILE 40 41 41 ILE ILE A . n A 1 41 MET 41 42 42 MET MET A . n A 1 42 GLY 42 43 43 GLY GLY A . n A 1 43 PRO 43 44 44 PRO PRO A . n A 1 44 GLU 44 45 45 GLU GLU A . n A 1 45 ASP 45 46 46 ASP ASP A . n A 1 46 THR 46 47 47 THR THR A . n A 1 47 CYS 47 48 48 CYS CYS A . n A 1 48 PHE 48 49 49 PHE PHE A . n A 1 49 GLU 49 50 50 GLU GLU A . n A 1 50 PHE 50 51 51 PHE PHE A . n A 1 51 GLY 51 52 52 GLY GLY A . n A 1 52 VAL 52 53 53 VAL VAL A . n A 1 53 PHE 53 54 54 PHE PHE A . n A 1 54 PRO 54 55 55 PRO PRO A . n A 1 55 ALA 55 56 56 ALA ALA A . n A 1 56 ILE 56 57 57 ILE ILE A . n A 1 57 LEU 57 58 58 LEU LEU A . n A 1 58 SER 58 59 59 SER SER A . n A 1 59 PHE 59 60 60 PHE PHE A . n A 1 60 PRO 60 61 61 PRO PRO A . n A 1 61 LEU 61 62 62 LEU LEU A . n A 1 62 ASP 62 63 63 ASP ASP A . n A 1 63 TYR 63 64 64 TYR TYR A . n A 1 64 PRO 64 65 65 PRO PRO A . n A 1 65 LEU 65 66 66 LEU LEU A . n A 1 66 SER 66 67 67 SER SER A . n A 1 67 PRO 67 68 68 PRO PRO A . n A 1 68 PRO 68 69 69 PRO PRO A . n A 1 69 LYS 69 70 70 LYS LYS A . n A 1 70 MET 70 71 71 MET MET A . n A 1 71 ARG 71 72 72 ARG ARG A . n A 1 72 PHE 72 73 73 PHE PHE A . n A 1 73 THR 73 74 74 THR THR A . n A 1 74 CYS 74 75 75 CYS CYS A . n A 1 75 GLU 75 76 76 GLU GLU A . n A 1 76 MET 76 77 77 MET MET A . n A 1 77 PHE 77 78 78 PHE PHE A . n A 1 78 HIS 78 79 79 HIS HIS A . n A 1 79 PRO 79 80 80 PRO PRO A . n A 1 80 ASN 80 81 81 ASN ASN A . n A 1 81 ILE 81 82 82 ILE ILE A . n A 1 82 TYR 82 83 83 TYR TYR A . n A 1 83 PRO 83 84 84 PRO PRO A . n A 1 84 ASP 84 85 85 ASP ASP A . n A 1 85 GLY 85 86 86 GLY GLY A . n A 1 86 ARG 86 87 87 ARG ARG A . n A 1 87 VAL 87 88 88 VAL VAL A . n A 1 88 CYS 88 89 89 CYS CYS A . n A 1 89 ILE 89 90 90 ILE ILE A . n A 1 90 SER 90 91 91 SER SER A . n A 1 91 ILE 91 92 92 ILE ILE A . n A 1 92 LEU 92 93 93 LEU LEU A . n A 1 93 HIS 93 94 94 HIS HIS A . n A 1 94 ALA 94 95 95 ALA ALA A . n A 1 95 PRO 95 96 96 PRO PRO A . n A 1 96 GLY 96 97 97 GLY GLY A . n A 1 97 ASP 97 98 98 ASP ASP A . n A 1 98 ASP 98 99 99 ASP ASP A . n A 1 99 PRO 99 100 100 PRO PRO A . n A 1 100 MET 100 101 101 MET MET A . n A 1 101 GLY 101 102 102 GLY GLY A . n A 1 102 TYR 102 103 103 TYR TYR A . n A 1 103 GLU 103 104 104 GLU GLU A . n A 1 104 SER 104 105 105 SER SER A . n A 1 105 SER 105 106 106 SER SER A . n A 1 106 ALA 106 107 107 ALA ALA A . n A 1 107 GLU 107 108 108 GLU GLU A . n A 1 108 ARG 108 109 109 ARG ARG A . n A 1 109 TRP 109 110 110 TRP TRP A . n A 1 110 SER 110 111 111 SER SER A . n A 1 111 PRO 111 112 112 PRO PRO A . n A 1 112 VAL 112 113 113 VAL VAL A . n A 1 113 GLN 113 114 114 GLN GLN A . n A 1 114 SER 114 115 115 SER SER A . n A 1 115 VAL 115 116 116 VAL VAL A . n A 1 116 GLU 116 117 117 GLU GLU A . n A 1 117 LYS 117 118 118 LYS LYS A . n A 1 118 ILE 118 119 119 ILE ILE A . n A 1 119 LEU 119 120 120 LEU LEU A . n A 1 120 LEU 120 121 121 LEU LEU A . n A 1 121 SER 121 122 122 SER SER A . n A 1 122 VAL 122 123 123 VAL VAL A . n A 1 123 VAL 123 124 124 VAL VAL A . n A 1 124 SER 124 125 125 SER SER A . n A 1 125 MET 125 126 126 MET MET A . n A 1 126 LEU 126 127 127 LEU LEU A . n A 1 127 ALA 127 128 128 ALA ALA A . n A 1 128 GLU 128 129 129 GLU GLU A . n A 1 129 PRO 129 130 130 PRO PRO A . n A 1 130 ASN 130 131 131 ASN ASN A . n A 1 131 ASP 131 132 132 ASP ASP A . n A 1 132 GLU 132 133 133 GLU GLU A . n A 1 133 SER 133 134 134 SER SER A . n A 1 134 GLY 134 135 135 GLY GLY A . n A 1 135 ALA 135 136 136 ALA ALA A . n A 1 136 ASN 136 137 137 ASN ASN A . n A 1 137 VAL 137 138 138 VAL VAL A . n A 1 138 ASP 138 139 139 ASP ASP A . n A 1 139 ALA 139 140 140 ALA ALA A . n A 1 140 SER 140 141 141 SER SER A . n A 1 141 LYS 141 142 142 LYS LYS A . n A 1 142 MET 142 143 143 MET MET A . n A 1 143 TRP 143 144 144 TRP TRP A . n A 1 144 ARG 144 145 145 ARG ARG A . n A 1 145 ASP 145 146 146 ASP ASP A . n A 1 146 ASP 146 147 147 ASP ASP A . n A 1 147 ARG 147 148 148 ARG ARG A . n A 1 148 GLU 148 149 149 GLU GLU A . n A 1 149 GLN 149 150 150 GLN GLN A . n A 1 150 PHE 150 151 151 PHE PHE A . n A 1 151 TYR 151 152 152 TYR TYR A . n A 1 152 LYS 152 153 153 LYS LYS A . n A 1 153 ILE 153 154 154 ILE ILE A . n A 1 154 ALA 154 155 155 ALA ALA A . n A 1 155 LYS 155 156 156 LYS LYS A . n A 1 156 GLN 156 157 157 GLN GLN A . n A 1 157 ILE 157 158 158 ILE ILE A . n A 1 158 VAL 158 159 159 VAL VAL A . n A 1 159 GLN 159 160 160 GLN GLN A . n A 1 160 LYS 160 161 161 LYS LYS A . n A 1 161 SER 161 162 162 SER SER A . n A 1 162 LEU 162 163 163 LEU LEU A . n A 1 163 GLY 163 164 164 GLY GLY A . n A 1 164 LEU 164 165 165 LEU LEU A . n B 2 1 TRP 1 573 573 TRP TRP B . n B 2 2 SER 2 574 574 SER SER B . n B 2 3 ALA 3 575 575 ALA ALA B . n B 2 4 ASP 4 576 576 ASP ASP B . n B 2 5 GLU 5 577 577 GLU GLU B . n B 2 6 ARG 6 578 578 ARG ARG B . n B 2 7 GLN 7 579 579 GLN GLN B . n B 2 8 ARG 8 580 580 ARG ARG B . n B 2 9 MET 9 581 581 MET MET B . n B 2 10 LEU 10 582 582 LEU LEU B . n B 2 11 VAL 11 583 583 VAL VAL B . n B 2 12 GLN 12 584 584 GLN GLN B . n B 2 13 ARG 13 585 585 ARG ARG B . n B 2 14 LYS 14 586 586 LYS LYS B . n B 2 15 ASP 15 587 587 ASP ASP B . n B 2 16 GLU 16 588 588 GLU GLU B . n B 2 17 LEU 17 589 589 LEU LEU B . n B 2 18 LEU 18 590 590 LEU LEU B . n B 2 19 GLN 19 591 591 GLN GLN B . n B 2 20 GLN 20 592 592 GLN GLN B . n B 2 21 ALA 21 593 593 ALA ALA B . n B 2 22 ARG 22 594 594 ARG ARG B . n B 2 23 LYS 23 595 595 LYS LYS B . n B 2 24 ARG 24 596 596 ARG ARG B . n B 2 25 PHE 25 597 597 PHE PHE B . n B 2 26 LEU 26 598 598 LEU LEU B . n B 2 27 ASN 27 599 599 ASN ASN B . n B 2 28 LYS 28 600 600 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 801 801 HOH HOH A . C 3 HOH 2 802 802 HOH HOH A . C 3 HOH 3 803 803 HOH HOH A . C 3 HOH 4 804 804 HOH HOH A . C 3 HOH 5 805 805 HOH HOH A . C 3 HOH 6 806 806 HOH HOH A . C 3 HOH 7 808 808 HOH HOH A . C 3 HOH 8 809 809 HOH HOH A . C 3 HOH 9 810 810 HOH HOH A . C 3 HOH 10 811 811 HOH HOH A . C 3 HOH 11 812 812 HOH HOH A . C 3 HOH 12 813 813 HOH HOH A . C 3 HOH 13 814 814 HOH HOH A . C 3 HOH 14 816 816 HOH HOH A . C 3 HOH 15 817 817 HOH HOH A . C 3 HOH 16 818 818 HOH HOH A . C 3 HOH 17 819 819 HOH HOH A . C 3 HOH 18 820 820 HOH HOH A . C 3 HOH 19 821 821 HOH HOH A . C 3 HOH 20 822 822 HOH HOH A . C 3 HOH 21 824 824 HOH HOH A . C 3 HOH 22 825 825 HOH HOH A . C 3 HOH 23 827 827 HOH HOH A . C 3 HOH 24 828 828 HOH HOH A . C 3 HOH 25 829 829 HOH HOH A . C 3 HOH 26 830 830 HOH HOH A . C 3 HOH 27 831 831 HOH HOH A . C 3 HOH 28 832 832 HOH HOH A . C 3 HOH 29 833 833 HOH HOH A . C 3 HOH 30 835 835 HOH HOH A . C 3 HOH 31 837 837 HOH HOH A . C 3 HOH 32 838 838 HOH HOH A . C 3 HOH 33 840 840 HOH HOH A . C 3 HOH 34 841 841 HOH HOH A . C 3 HOH 35 842 842 HOH HOH A . C 3 HOH 36 844 844 HOH HOH A . C 3 HOH 37 846 846 HOH HOH A . C 3 HOH 38 847 847 HOH HOH A . C 3 HOH 39 848 848 HOH HOH A . C 3 HOH 40 849 849 HOH HOH A . C 3 HOH 41 850 850 HOH HOH A . C 3 HOH 42 851 851 HOH HOH A . C 3 HOH 43 852 852 HOH HOH A . C 3 HOH 44 853 853 HOH HOH A . C 3 HOH 45 854 854 HOH HOH A . C 3 HOH 46 855 855 HOH HOH A . C 3 HOH 47 856 856 HOH HOH A . C 3 HOH 48 857 857 HOH HOH A . C 3 HOH 49 858 858 HOH HOH A . C 3 HOH 50 860 860 HOH HOH A . C 3 HOH 51 861 861 HOH HOH A . C 3 HOH 52 862 862 HOH HOH A . C 3 HOH 53 863 863 HOH HOH A . C 3 HOH 54 865 865 HOH HOH A . C 3 HOH 55 868 868 HOH HOH A . C 3 HOH 56 869 869 HOH HOH A . C 3 HOH 57 870 870 HOH HOH A . C 3 HOH 58 872 872 HOH HOH A . C 3 HOH 59 873 873 HOH HOH A . C 3 HOH 60 874 874 HOH HOH A . C 3 HOH 61 875 875 HOH HOH A . C 3 HOH 62 877 877 HOH HOH A . C 3 HOH 63 878 878 HOH HOH A . C 3 HOH 64 880 880 HOH HOH A . C 3 HOH 65 882 882 HOH HOH A . C 3 HOH 66 883 883 HOH HOH A . C 3 HOH 67 884 884 HOH HOH A . C 3 HOH 68 885 885 HOH HOH A . C 3 HOH 69 887 887 HOH HOH A . C 3 HOH 70 889 889 HOH HOH A . C 3 HOH 71 890 890 HOH HOH A . C 3 HOH 72 891 891 HOH HOH A . C 3 HOH 73 893 893 HOH HOH A . C 3 HOH 74 894 894 HOH HOH A . C 3 HOH 75 896 896 HOH HOH A . C 3 HOH 76 897 897 HOH HOH A . C 3 HOH 77 898 898 HOH HOH A . C 3 HOH 78 899 899 HOH HOH A . C 3 HOH 79 900 900 HOH HOH A . C 3 HOH 80 901 901 HOH HOH A . C 3 HOH 81 902 902 HOH HOH A . C 3 HOH 82 903 903 HOH HOH A . C 3 HOH 83 904 904 HOH HOH A . C 3 HOH 84 905 905 HOH HOH A . C 3 HOH 85 906 906 HOH HOH A . C 3 HOH 86 908 908 HOH HOH A . C 3 HOH 87 909 909 HOH HOH A . C 3 HOH 88 910 910 HOH HOH A . C 3 HOH 89 912 912 HOH HOH A . C 3 HOH 90 914 914 HOH HOH A . C 3 HOH 91 915 915 HOH HOH A . C 3 HOH 92 916 916 HOH HOH A . C 3 HOH 93 917 917 HOH HOH A . C 3 HOH 94 918 918 HOH HOH A . C 3 HOH 95 919 919 HOH HOH A . C 3 HOH 96 920 920 HOH HOH A . C 3 HOH 97 921 921 HOH HOH A . C 3 HOH 98 922 922 HOH HOH A . C 3 HOH 99 923 923 HOH HOH A . C 3 HOH 100 924 924 HOH HOH A . C 3 HOH 101 925 925 HOH HOH A . C 3 HOH 102 926 926 HOH HOH A . C 3 HOH 103 927 927 HOH HOH A . C 3 HOH 104 928 928 HOH HOH A . C 3 HOH 105 929 929 HOH HOH A . C 3 HOH 106 930 930 HOH HOH A . C 3 HOH 107 931 931 HOH HOH A . C 3 HOH 108 932 932 HOH HOH A . C 3 HOH 109 933 933 HOH HOH A . C 3 HOH 110 934 934 HOH HOH A . C 3 HOH 111 935 935 HOH HOH A . C 3 HOH 112 936 936 HOH HOH A . C 3 HOH 113 937 937 HOH HOH A . C 3 HOH 114 938 938 HOH HOH A . C 3 HOH 115 940 940 HOH HOH A . C 3 HOH 116 943 943 HOH HOH A . C 3 HOH 117 944 944 HOH HOH A . C 3 HOH 118 945 945 HOH HOH A . C 3 HOH 119 946 946 HOH HOH A . C 3 HOH 120 947 947 HOH HOH A . C 3 HOH 121 949 949 HOH HOH A . C 3 HOH 122 950 950 HOH HOH A . C 3 HOH 123 951 951 HOH HOH A . C 3 HOH 124 952 952 HOH HOH A . C 3 HOH 125 953 953 HOH HOH A . C 3 HOH 126 954 954 HOH HOH A . C 3 HOH 127 955 955 HOH HOH A . C 3 HOH 128 956 956 HOH HOH A . C 3 HOH 129 957 957 HOH HOH A . C 3 HOH 130 958 958 HOH HOH A . C 3 HOH 131 959 959 HOH HOH A . C 3 HOH 132 961 961 HOH HOH A . C 3 HOH 133 962 962 HOH HOH A . C 3 HOH 134 963 963 HOH HOH A . D 3 HOH 1 807 807 HOH HOH B . D 3 HOH 2 815 815 HOH HOH B . D 3 HOH 3 823 823 HOH HOH B . D 3 HOH 4 826 826 HOH HOH B . D 3 HOH 5 834 834 HOH HOH B . D 3 HOH 6 836 836 HOH HOH B . D 3 HOH 7 839 839 HOH HOH B . D 3 HOH 8 843 843 HOH HOH B . D 3 HOH 9 845 845 HOH HOH B . D 3 HOH 10 859 859 HOH HOH B . D 3 HOH 11 864 864 HOH HOH B . D 3 HOH 12 866 866 HOH HOH B . D 3 HOH 13 867 867 HOH HOH B . D 3 HOH 14 871 871 HOH HOH B . D 3 HOH 15 876 876 HOH HOH B . D 3 HOH 16 879 879 HOH HOH B . D 3 HOH 17 881 881 HOH HOH B . D 3 HOH 18 886 886 HOH HOH B . D 3 HOH 19 888 888 HOH HOH B . D 3 HOH 20 892 892 HOH HOH B . D 3 HOH 21 895 895 HOH HOH B . D 3 HOH 22 907 907 HOH HOH B . D 3 HOH 23 911 911 HOH HOH B . D 3 HOH 24 913 913 HOH HOH B . D 3 HOH 25 939 939 HOH HOH B . D 3 HOH 26 941 941 HOH HOH B . D 3 HOH 27 942 942 HOH HOH B . D 3 HOH 28 948 948 HOH HOH B . D 3 HOH 29 960 960 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1970 ? 1 MORE -12 ? 1 'SSA (A^2)' 10300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-04-25 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2021-10-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_phasing_MR.entry_id 3H8K _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 48.910 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 43.050 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 43.050 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.1 'Thu Nov 22 16:35:27 2007' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 99 ? ? -175.45 92.91 2 1 MET A 101 ? ? 47.71 28.98 3 1 TYR A 103 ? ? -108.82 -61.07 4 1 GLU A 104 ? ? -178.38 -179.50 5 1 SER A 105 ? ? -66.23 96.84 6 1 ALA A 107 ? ? -47.90 150.78 7 1 PRO A 130 ? ? -43.72 90.90 8 1 ASP A 132 ? ? -68.65 90.43 9 1 ASP A 132 ? ? -67.74 89.38 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #