HEADER HEME-BINDING PROTEIN 29-APR-09 3H8T TITLE STRUCTURE OF PORPHYROMONAS GINGIVALIS HEME-BINDING PROTEIN HMUY IN TITLE 2 COMPLEX WITH HEME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMUY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 26 TO 216 (26 TO 34 DISORDERED); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_COMMON: BACTEROIDES GINGIVALIS; SOURCE 4 ORGANISM_TAXID: 837; SOURCE 5 GENE: HMUY, HMUY'; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEMOPHORE, BACTERIAL VIRULENCE FACTOR, HEME-BINDING PROTEIN, KEYWDS 2 PERIODONTITIS EXPDTA X-RAY DIFFRACTION AUTHOR H.WOJTOWICZ,T.GUEVARA,C.TALLANT,M.OLCZAK,A.SROKA,J.POTEMPA,M.SOLA, AUTHOR 2 T.OLCZAK,F.X.GOMIS-RUTH REVDAT 5 21-FEB-24 3H8T 1 REMARK REVDAT 4 14-NOV-12 3H8T 1 REMARK REVDAT 3 13-JUL-11 3H8T 1 VERSN REVDAT 2 26-MAY-09 3H8T 1 JRNL REVDAT 1 12-MAY-09 3H8T 0 JRNL AUTH H.WOJTOWICZ,T.GUEVARA,C.TALLANT,M.OLCZAK,A.SROKA,J.POTEMPA, JRNL AUTH 2 M.SOLA,T.OLCZAK,F.X.GOMIS-RUTH JRNL TITL UNIQUE STRUCTURE AND STABILITY OF HMUY, A NOVEL HEME-BINDING JRNL TITL 2 PROTEIN OF PORPHYROMONAS GINGIVALIS JRNL REF PLOS PATHOG. V. 5 00419 2009 JRNL REFN ISSN 1553-7366 JRNL PMID 19424422 JRNL DOI 10.1371/JOURNAL.PPAT.1000419 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3403 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 142 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.290 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3084 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4188 ; 1.310 ; 2.038 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 6.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;31.865 ;24.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 489 ;12.492 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2351 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1790 ; 0.695 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2876 ; 1.325 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 2.188 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1312 ; 3.608 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0630 27.9660 29.3210 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0506 REMARK 3 T33: 0.0421 T12: -0.0231 REMARK 3 T13: 0.0052 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.3227 L22: 0.5920 REMARK 3 L33: 0.1811 L12: 0.2214 REMARK 3 L13: 0.0886 L23: -0.1195 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.0577 S13: -0.0605 REMARK 3 S21: 0.0279 S22: 0.0382 S23: -0.0915 REMARK 3 S31: -0.0032 S32: -0.0398 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0510 39.9040 15.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.0754 T22: 0.1101 REMARK 3 T33: 0.0579 T12: -0.0292 REMARK 3 T13: 0.0183 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.8386 L22: 1.8206 REMARK 3 L33: 7.5605 L12: 1.8238 REMARK 3 L13: 0.9780 L23: 0.6970 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.2180 S13: -0.1896 REMARK 3 S21: -0.0569 S22: 0.2503 S23: -0.1814 REMARK 3 S31: 0.0010 S32: 0.0606 S33: -0.2182 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9510 66.4720 -10.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0371 REMARK 3 T33: 0.0296 T12: -0.0086 REMARK 3 T13: 0.0026 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.4142 L22: 0.5756 REMARK 3 L33: 0.3196 L12: 0.1198 REMARK 3 L13: -0.1437 L23: -0.2667 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0149 S13: 0.0390 REMARK 3 S21: 0.0436 S22: 0.0028 S23: -0.0249 REMARK 3 S31: -0.0278 S32: -0.0071 S33: -0.0231 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0950 53.5750 2.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.0764 REMARK 3 T33: 0.0675 T12: -0.0055 REMARK 3 T13: -0.0192 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.2627 L22: 5.3163 REMARK 3 L33: 5.1299 L12: -0.9062 REMARK 3 L13: 0.6577 L23: 0.4848 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: -0.0902 S13: 0.0297 REMARK 3 S21: 0.2178 S22: 0.2770 S23: -0.3300 REMARK 3 S31: -0.1141 S32: -0.2885 S33: -0.2274 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 511 A 938 REMARK 3 RESIDUE RANGE : B 534 B 942 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7180 46.7870 10.4130 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0626 REMARK 3 T33: 0.0669 T12: -0.0107 REMARK 3 T13: -0.0025 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.0529 L22: 0.2831 REMARK 3 L33: 0.4334 L12: 0.1064 REMARK 3 L13: -0.1325 L23: -0.3188 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.0099 S13: -0.0100 REMARK 3 S21: 0.0207 S22: -0.0081 S23: -0.0460 REMARK 3 S31: -0.0244 S32: -0.0208 S33: 0.0121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-08; 27-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID23-1; ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 0.9792 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) CHANNEL-CUT; REMARK 200 SILICON (1 1 1) CHANNEL-CUT REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION ASSAYS WERE PERFORMED REMARK 280 FOLLOWING THE SITTING-DROP VAPOR DIFFUSION METHOD. RESERVOIR REMARK 280 SOLUTIONS WERE PREPARED BY A TECAN ROBOT AND 200-NL REMARK 280 CRYSTALLIZATION DROPS WERE DISPENSED ON 96X2-WELL MRC PLATES REMARK 280 (WILDEN / INNOVADYNE) BY A CARTESIAN NANODROP ROBOT (GENOMIC REMARK 280 SOLUTIONS) AT THE JOINT IBMB-CSIC/IRB/BARCELONA SCIENCE PARK REMARK 280 HIGH-THROUGHPUT CRYSTALLOGRAPHY PLATFORM (PAC). BEST CRYSTALS AS REMARK 280 THIN REDDISH PRISMS APPEARED IN A BRUKER STEADY-TEMPERATURE REMARK 280 CRYSTAL FARM AT 20 C USING PROTEIN SOLUTION (26MG/ML IN 5MM TRIS/ REMARK 280 HCL, PH 8.0) AND 2.4M (NH4)2SO4, 0.1M MES, PH6.0 AS RESERVOIR REMARK 280 SOLUTION AND D(+)-GLUCOSE MONOHYDRATE AS ADDITIVE (RELATIVE REMARK 280 VOLUMETRIC RATIOS 1:1:0.35). THESE CONDITIONS WERE SUCCESSFULLY REMARK 280 SCALED UP TO THE MICROLITER RANGE WITH CRYSCHEM CRYSTALLIZATION REMARK 280 DISHES (HAMPTON RESEARCH). VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.87000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.86500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.87000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.86500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.87000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.86500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.87000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.87000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.86500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -245.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 93.74000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 26 REMARK 465 GLU A 27 REMARK 465 PRO A 28 REMARK 465 ASN A 29 REMARK 465 GLN A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 THR A 33 REMARK 465 PRO A 34 REMARK 465 ASP B 26 REMARK 465 GLU B 27 REMARK 465 PRO B 28 REMARK 465 ASN B 29 REMARK 465 GLN B 30 REMARK 465 PRO B 31 REMARK 465 SER B 32 REMARK 465 THR B 33 REMARK 465 PRO B 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 69 54.56 -140.60 REMARK 500 ARG A 79 -119.91 48.33 REMARK 500 ALA A 169 31.65 -151.66 REMARK 500 ASN B 69 54.51 -141.71 REMARK 500 ASP B 70 115.39 -163.67 REMARK 500 ARG B 79 -118.38 48.15 REMARK 500 ALA B 169 34.11 -150.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 134 NE2 REMARK 620 2 HEM A 301 NA 90.5 REMARK 620 3 HEM A 301 NB 89.1 90.4 REMARK 620 4 HEM A 301 NC 89.1 178.5 88.2 REMARK 620 5 HEM A 301 ND 90.9 89.2 179.6 92.3 REMARK 620 6 HIS A 166 NE2 177.1 91.9 92.5 88.6 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 134 NE2 REMARK 620 2 HEM B 301 NA 90.0 REMARK 620 3 HEM B 301 NB 89.5 90.8 REMARK 620 4 HEM B 301 NC 90.7 179.2 88.7 REMARK 620 5 HEM B 301 ND 90.7 89.2 179.8 91.2 REMARK 620 6 HIS B 166 NE2 176.9 92.4 92.5 87.0 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 509 DBREF 3H8T A 26 216 UNP A2I2W2 A2I2W2_PORGI 26 216 DBREF 3H8T B 26 216 UNP A2I2W2 A2I2W2_PORGI 26 216 SEQRES 1 A 191 ASP GLU PRO ASN GLN PRO SER THR PRO GLU ALA VAL THR SEQRES 2 A 191 LYS THR VAL THR ILE ASP ALA SER LYS TYR GLU THR TRP SEQRES 3 A 191 GLN TYR PHE SER PHE SER LYS GLY GLU VAL VAL ASN VAL SEQRES 4 A 191 THR ASP TYR LYS ASN ASP LEU ASN TRP ASP MET ALA LEU SEQRES 5 A 191 HIS ARG TYR ASP VAL ARG LEU ASN CYS GLY GLU SER GLY SEQRES 6 A 191 LYS GLY LYS GLY GLY ALA VAL PHE SER GLY LYS THR GLU SEQRES 7 A 191 MET ASP GLN ALA THR THR VAL PRO THR ASP GLY TYR THR SEQRES 8 A 191 VAL ASP VAL LEU GLY ARG ILE THR VAL LYS TYR GLU MET SEQRES 9 A 191 GLY PRO ASP GLY HIS GLN MET GLU TYR GLU GLU GLN GLY SEQRES 10 A 191 PHE SER GLU VAL ILE THR GLY LYS LYS ASN ALA GLN GLY SEQRES 11 A 191 PHE ALA SER GLY GLY TRP LEU GLU PHE SER HIS GLY PRO SEQRES 12 A 191 ALA GLY PRO THR TYR LYS LEU SER LYS ARG VAL PHE PHE SEQRES 13 A 191 VAL ARG GLY ALA ASP GLY ASN ILE ALA LYS VAL GLN PHE SEQRES 14 A 191 THR ASP TYR GLN ASP ALA GLU LEU LYS LYS GLY VAL ILE SEQRES 15 A 191 THR PHE THR TYR THR TYR PRO VAL LYS SEQRES 1 B 191 ASP GLU PRO ASN GLN PRO SER THR PRO GLU ALA VAL THR SEQRES 2 B 191 LYS THR VAL THR ILE ASP ALA SER LYS TYR GLU THR TRP SEQRES 3 B 191 GLN TYR PHE SER PHE SER LYS GLY GLU VAL VAL ASN VAL SEQRES 4 B 191 THR ASP TYR LYS ASN ASP LEU ASN TRP ASP MET ALA LEU SEQRES 5 B 191 HIS ARG TYR ASP VAL ARG LEU ASN CYS GLY GLU SER GLY SEQRES 6 B 191 LYS GLY LYS GLY GLY ALA VAL PHE SER GLY LYS THR GLU SEQRES 7 B 191 MET ASP GLN ALA THR THR VAL PRO THR ASP GLY TYR THR SEQRES 8 B 191 VAL ASP VAL LEU GLY ARG ILE THR VAL LYS TYR GLU MET SEQRES 9 B 191 GLY PRO ASP GLY HIS GLN MET GLU TYR GLU GLU GLN GLY SEQRES 10 B 191 PHE SER GLU VAL ILE THR GLY LYS LYS ASN ALA GLN GLY SEQRES 11 B 191 PHE ALA SER GLY GLY TRP LEU GLU PHE SER HIS GLY PRO SEQRES 12 B 191 ALA GLY PRO THR TYR LYS LEU SER LYS ARG VAL PHE PHE SEQRES 13 B 191 VAL ARG GLY ALA ASP GLY ASN ILE ALA LYS VAL GLN PHE SEQRES 14 B 191 THR ASP TYR GLN ASP ALA GLU LEU LYS LYS GLY VAL ILE SEQRES 15 B 191 THR PHE THR TYR THR TYR PRO VAL LYS HET HEM A 301 43 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET SO4 A 510 5 HET HEM B 301 43 HET GOL B 501 6 HET GOL B 502 6 HET SO4 B 507 5 HET SO4 B 508 5 HET SO4 B 509 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 8 SO4 4(O4 S 2-) FORMUL 15 HOH *432(H2 O) HELIX 1 1 ASP A 66 ASP A 70 5 5 HELIX 2 2 CYS A 86 GLY A 90 5 5 HELIX 3 3 GLU A 103 ALA A 107 5 5 HELIX 4 4 SER A 144 GLY A 149 1 6 HELIX 5 5 ASP B 66 ASP B 70 5 5 HELIX 6 6 CYS B 86 GLY B 90 5 5 HELIX 7 7 GLU B 103 ALA B 107 5 5 HELIX 8 8 SER B 144 GLY B 149 1 6 SHEET 1 A 5 VAL A 37 ASP A 44 0 SHEET 2 A 5 LYS A 204 VAL A 215 -1 O ILE A 207 N ILE A 43 SHEET 3 A 5 ILE A 189 GLN A 198 -1 N GLN A 193 O THR A 210 SHEET 4 A 5 VAL A 179 ARG A 183 -1 N VAL A 182 O ALA A 190 SHEET 5 A 5 GLY A 95 PHE A 98 -1 N VAL A 97 O PHE A 181 SHEET 1 B 4 GLU A 60 VAL A 62 0 SHEET 2 B 4 GLN A 52 SER A 55 -1 N TYR A 53 O VAL A 62 SHEET 3 B 4 MET A 75 HIS A 78 -1 O LEU A 77 N GLN A 52 SHEET 4 B 4 ASP A 81 LEU A 84 -1 O ASP A 81 N HIS A 78 SHEET 1 C 2 VAL A 119 GLY A 130 0 SHEET 2 C 2 GLY A 133 PHE A 143 -1 O GLN A 135 N GLU A 128 SHEET 1 D 2 LYS A 150 LYS A 151 0 SHEET 2 D 2 ALA A 157 SER A 158 -1 O SER A 158 N LYS A 150 SHEET 1 E 2 LEU A 162 GLY A 167 0 SHEET 2 E 2 GLY A 170 LEU A 175 -1 O LYS A 174 N GLU A 163 SHEET 1 F 5 VAL B 37 ASP B 44 0 SHEET 2 F 5 LYS B 204 VAL B 215 -1 O ILE B 207 N ILE B 43 SHEET 3 F 5 ILE B 189 GLN B 198 -1 N GLN B 193 O THR B 210 SHEET 4 F 5 VAL B 179 ARG B 183 -1 N VAL B 182 O ALA B 190 SHEET 5 F 5 GLY B 95 PHE B 98 -1 N VAL B 97 O PHE B 181 SHEET 1 G 4 GLU B 60 VAL B 62 0 SHEET 2 G 4 GLN B 52 SER B 55 -1 N TYR B 53 O VAL B 62 SHEET 3 G 4 MET B 75 HIS B 78 -1 O MET B 75 N PHE B 54 SHEET 4 G 4 ASP B 81 LEU B 84 -1 O ASP B 81 N HIS B 78 SHEET 1 H 2 VAL B 119 GLY B 130 0 SHEET 2 H 2 GLY B 133 PHE B 143 -1 O GLN B 135 N GLU B 128 SHEET 1 I 2 LYS B 150 LYS B 151 0 SHEET 2 I 2 ALA B 157 SER B 158 -1 O SER B 158 N LYS B 150 SHEET 1 J 2 LEU B 162 GLY B 167 0 SHEET 2 J 2 GLY B 170 LEU B 175 -1 O LYS B 174 N GLU B 163 LINK NE2 HIS A 134 FE HEM A 301 1555 1555 2.03 LINK NE2 HIS A 166 FE HEM A 301 1555 1555 2.07 LINK NE2 HIS B 134 FE HEM B 301 1555 1555 2.05 LINK NE2 HIS B 166 FE HEM B 301 1555 1555 2.07 CISPEP 1 TYR A 213 PRO A 214 0 -9.70 CISPEP 2 TYR B 213 PRO B 214 0 -7.34 SITE 1 AC1 24 TYR A 48 ARG A 79 TYR A 80 THR A 124 SITE 2 AC1 24 TYR A 127 MET A 129 HIS A 134 GLN A 154 SITE 3 AC1 24 GLY A 155 PHE A 156 PHE A 164 HIS A 166 SITE 4 AC1 24 ALA A 169 TYR A 173 LYS A 204 GOL A 506 SITE 5 AC1 24 HOH A 664 HOH A 901 HOH A 903 HOH A 904 SITE 6 AC1 24 HIS B 166 GLY B 167 PRO B 168 HEM B 301 SITE 1 AC2 12 THR A 40 VAL A 41 THR A 42 HOH A 566 SITE 2 AC2 12 HOH A 649 THR B 42 ASP B 196 ASP B 199 SITE 3 AC2 12 ALA B 200 THR B 208 HOH B 632 HOH B 876 SITE 1 AC3 8 LYS A 47 THR A 50 GLN A 52 HOH A 832 SITE 2 AC3 8 LYS B 47 THR B 50 GLN B 52 HOH B 878 SITE 1 AC4 6 LYS A 101 THR A 102 GLU A 103 HOH A 555 SITE 2 AC4 6 ASP B 66 ASN B 69 SITE 1 AC5 10 TYR A 80 LYS A 151 GLY A 155 ALA A 157 SITE 2 AC5 10 PHE A 164 HEM A 301 HOH A 517 HOH A 521 SITE 3 AC5 10 HOH A 522 HOH A 902 SITE 1 AC6 5 THR A 112 ASP A 113 GLY A 114 TYR A 115 SITE 2 AC6 5 ARG A 183 SITE 1 AC7 22 GLY A 167 PRO A 168 HEM A 301 ARG B 79 SITE 2 AC7 22 TYR B 80 THR B 124 TYR B 127 MET B 129 SITE 3 AC7 22 HIS B 134 MET B 136 GLN B 154 GLY B 155 SITE 4 AC7 22 PHE B 156 PHE B 164 HIS B 166 ALA B 169 SITE 5 AC7 22 TYR B 173 GOL B 502 HOH B 573 HOH B 575 SITE 6 AC7 22 HOH B 576 HOH B 768 SITE 1 AC8 12 THR A 42 ASP A 196 ASP A 199 ALA A 200 SITE 2 AC8 12 THR A 208 HOH A 565 THR B 40 VAL B 41 SITE 3 AC8 12 THR B 42 HOH B 633 HOH B 741 HOH B 877 SITE 1 AC9 10 TYR B 80 LYS B 151 GLY B 155 ALA B 157 SITE 2 AC9 10 PHE B 164 HEM B 301 HOH B 574 HOH B 584 SITE 3 AC9 10 HOH B 588 HOH B 589 SITE 1 BC1 7 ASN A 152 SER A 158 HOH A 715 HOH A 869 SITE 2 BC1 7 ASN B 152 ALA B 153 SO4 B 508 SITE 1 BC2 6 ASN A 152 ALA A 153 ASN B 152 SO4 B 507 SITE 2 BC2 6 HOH B 803 HOH B 805 SITE 1 BC3 5 ASP B 113 GLY B 114 TYR B 115 ARG B 183 SITE 2 BC3 5 HOH B 893 CRYST1 93.740 93.740 113.730 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008793 0.00000