data_3H8U # _entry.id 3H8U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3H8U pdb_00003h8u 10.2210/pdb3h8u/pdb RCSB RCSB052837 ? ? WWPDB D_1000052837 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391713 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3H8U _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of uncharacterized conserved protein with double-stranded beta-helix domain (YP_001338853.1) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.80 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3H8U _cell.length_a 46.850 _cell.length_b 46.850 _cell.length_c 94.940 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3H8U _symmetry.Int_Tables_number 145 _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized conserved protein with double-stranded beta-helix domain' 13458.488 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'NONAETHYLENE GLYCOL' 414.488 1 ? ? ? ? 5 water nat water 18.015 207 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)GVN(MSE)RAETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAE YHQGNGIVTHLKAGDIAIAKPGQVHGA(MSE)NSGPEPFIFVSVVAPGNAGFALAEK ; _entity_poly.pdbx_seq_one_letter_code_can ;GMGVNMRAETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIV THLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPGNAGFALAEK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 391713 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLY n 1 4 VAL n 1 5 ASN n 1 6 MSE n 1 7 ARG n 1 8 ALA n 1 9 GLU n 1 10 THR n 1 11 GLU n 1 12 SER n 1 13 ARG n 1 14 ILE n 1 15 PHE n 1 16 SER n 1 17 VAL n 1 18 ASP n 1 19 GLU n 1 20 TYR n 1 21 VAL n 1 22 ARG n 1 23 PRO n 1 24 SER n 1 25 ASN n 1 26 GLY n 1 27 GLU n 1 28 PRO n 1 29 ILE n 1 30 ARG n 1 31 SER n 1 32 VAL n 1 33 VAL n 1 34 LEU n 1 35 GLU n 1 36 THR n 1 37 ASN n 1 38 ASP n 1 39 SER n 1 40 VAL n 1 41 VAL n 1 42 VAL n 1 43 VAL n 1 44 TRP n 1 45 HIS n 1 46 ALA n 1 47 HIS n 1 48 PRO n 1 49 GLY n 1 50 GLN n 1 51 GLU n 1 52 ILE n 1 53 ALA n 1 54 SER n 1 55 HIS n 1 56 VAL n 1 57 HIS n 1 58 PRO n 1 59 HIS n 1 60 GLY n 1 61 GLN n 1 62 ASP n 1 63 THR n 1 64 TRP n 1 65 THR n 1 66 VAL n 1 67 ILE n 1 68 SER n 1 69 GLY n 1 70 GLU n 1 71 ALA n 1 72 GLU n 1 73 TYR n 1 74 HIS n 1 75 GLN n 1 76 GLY n 1 77 ASN n 1 78 GLY n 1 79 ILE n 1 80 VAL n 1 81 THR n 1 82 HIS n 1 83 LEU n 1 84 LYS n 1 85 ALA n 1 86 GLY n 1 87 ASP n 1 88 ILE n 1 89 ALA n 1 90 ILE n 1 91 ALA n 1 92 LYS n 1 93 PRO n 1 94 GLY n 1 95 GLN n 1 96 VAL n 1 97 HIS n 1 98 GLY n 1 99 ALA n 1 100 MSE n 1 101 ASN n 1 102 SER n 1 103 GLY n 1 104 PRO n 1 105 GLU n 1 106 PRO n 1 107 PHE n 1 108 ILE n 1 109 PHE n 1 110 VAL n 1 111 SER n 1 112 VAL n 1 113 VAL n 1 114 ALA n 1 115 PRO n 1 116 GLY n 1 117 ASN n 1 118 ALA n 1 119 GLY n 1 120 PHE n 1 121 ALA n 1 122 LEU n 1 123 ALA n 1 124 GLU n 1 125 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KPN78578_51600, KPN_pKPN5p08243, YP_001338853.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Klebsiella pneumoniae subsp. pneumoniae MGH 78578' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272620 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6TJ50_KLEP7 _struct_ref.pdbx_db_accession A6TJ50 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGVNMRAETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVT HLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPGNAGFALAEK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3H8U A 2 ? 125 ? A6TJ50 1 ? 124 ? 1 124 2 1 3H8U B 2 ? 125 ? A6TJ50 1 ? 124 ? 1 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3H8U GLY A 1 ? UNP A6TJ50 ? ? 'expression tag' 0 1 2 3H8U GLY B 1 ? UNP A6TJ50 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PE non-polymer . 'NONAETHYLENE GLYCOL' ? 'C18 H38 O10' 414.488 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3H8U # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '1.7000M (NH4)2SO4, 15.0000% Glycerol, 1.7000% PEG-400, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2008-10-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochrometer' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94645 1.0 2 0.97965 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_wavelength_list 0.94645,0.97965 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3H8U _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 24.953 _reflns.number_obs 21525 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.percent_possible_obs 96.600 _reflns.B_iso_Wilson_estimate 19.864 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.100 _reflns.pdbx_redundancy 2.86 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.80 1.86 5531 ? 3759 0.491 1.440 ? ? ? ? ? 92.70 1 1 1.86 1.94 6567 ? 4438 0.360 2.0 ? ? ? ? ? 95.80 2 1 1.94 2.03 6285 ? 4251 0.234 2.9 ? ? ? ? ? 96.40 3 1 2.03 2.13 5722 ? 3870 0.180 3.7 ? ? ? ? ? 96.30 4 1 2.13 2.27 6464 ? 4374 0.133 4.9 ? ? ? ? ? 96.60 5 1 2.27 2.44 6019 ? 4088 0.104 5.8 ? ? ? ? ? 96.90 6 1 2.44 2.69 6326 ? 4295 0.082 7.3 ? ? ? ? ? 97.70 7 1 2.69 3.07 6118 ? 4146 0.055 10.3 ? ? ? ? ? 98.00 8 1 3.07 3.87 6273 ? 4258 0.040 14.5 ? ? ? ? ? 97.70 9 1 3.87 24.953 6326 ? 4311 0.033 17.3 ? ? ? ? ? 98.10 10 1 # _refine.entry_id 3H8U _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 24.953 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.740 _refine.ls_number_reflns_obs 21489 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. A SULPHATE CATION, GLYCEROL AND PEG FRAGMNET (2PE) MOLECULES FROM THE CRYSTALLIZATION CONDITIONS HAVE BEEN MODELED IN THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.154 _refine.ls_R_factor_R_work 0.152 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.196 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 1044 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 31.881 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.410 _refine.aniso_B[2][2] 0.410 _refine.aniso_B[3][3] -0.620 _refine.aniso_B[1][2] 0.210 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.115 _refine.pdbx_overall_ESU_R_Free 0.115 _refine.overall_SU_ML 0.081 _refine.overall_SU_B 4.999 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 71.98 _refine.B_iso_min 13.46 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1776 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 2010 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 24.953 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1925 0.015 0.021 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1685 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2645 1.509 1.924 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3934 0.774 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 258 6.733 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 86 31.571 24.535 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 271 11.939 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 7 8.859 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 288 0.093 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2223 0.008 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 372 0.004 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 308 0.199 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 1706 0.181 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 871 0.177 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 1201 0.082 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 171 0.179 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 8 0.127 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 75 0.234 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 15 0.138 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1238 0.756 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 501 0.214 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1986 1.214 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 753 1.995 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 650 3.213 4.500 ? ? # _refine_ls_shell.d_res_high 1.801 _refine_ls_shell.d_res_low 1.848 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.340 _refine_ls_shell.number_reflns_R_work 1480 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.R_factor_R_free 0.310 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1536 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3H8U _struct.title ;Crystal structure of uncharacterized conserved protein with double-stranded beta-helix domain (YP_001338853.1) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.80 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_001338853.1, uncharacterized conserved protein with double-stranded beta-helix domain, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Cupin domain, unknown function ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.entry_id 3H8U # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details 'SIZE EXCLUSION CHROMATOGRAPHY DATA SUPPORTS ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 17 ? VAL A 21 ? VAL A 16 VAL A 20 1 ? 5 HELX_P HELX_P2 2 VAL B 17 ? VAL B 21 ? VAL B 16 VAL B 20 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASN 5 C ? ? ? 1_555 A MSE 6 N ? ? A ASN 4 A MSE 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 6 C ? ? ? 1_555 A ARG 7 N ? ? A MSE 5 A ARG 6 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A ALA 99 C ? ? ? 1_555 A MSE 100 N ? ? A ALA 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A MSE 100 C ? ? ? 1_555 A ASN 101 N ? ? A MSE 99 A ASN 100 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale5 covale both ? B ALA 99 C ? ? ? 1_555 B MSE 100 N ? ? B ALA 98 B MSE 99 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B MSE 100 C ? ? ? 1_555 B ASN 101 N ? ? B MSE 99 B ASN 100 1_555 ? ? ? ? ? ? ? 1.337 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 103 A . ? GLY 102 A PRO 104 A ? PRO 103 A 1 1.92 2 ALA 114 A . ? ALA 113 A PRO 115 A ? PRO 114 A 1 -1.78 3 ALA 114 B . ? ALA 113 B PRO 115 B ? PRO 114 B 1 1.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 5 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 14 ? SER A 16 ? ILE A 13 SER A 15 A 2 ASP B 87 ? ALA B 91 ? ASP B 86 ALA B 90 A 3 GLN B 61 ? SER B 68 ? GLN B 60 SER B 67 A 4 PHE B 107 ? ALA B 114 ? PHE B 106 ALA B 113 A 5 VAL B 40 ? ALA B 46 ? VAL B 39 ALA B 45 A 6 SER B 31 ? GLU B 35 ? SER B 30 GLU B 34 B 1 SER A 31 ? GLU A 35 ? SER A 30 GLU A 34 B 2 VAL A 40 ? ALA A 46 ? VAL A 39 ALA A 45 B 3 PHE A 107 ? ALA A 114 ? PHE A 106 ALA A 113 B 4 GLN A 61 ? SER A 68 ? GLN A 60 SER A 67 B 5 ASP A 87 ? ALA A 91 ? ASP A 86 ALA A 90 B 6 ILE B 14 ? SER B 16 ? ILE B 13 SER B 15 C 1 VAL A 80 ? LYS A 84 ? VAL A 79 LYS A 83 C 2 GLU A 70 ? HIS A 74 ? GLU A 69 HIS A 73 C 3 HIS A 97 ? ASN A 101 ? HIS A 96 ASN A 100 C 4 GLU A 51 ? VAL A 56 ? GLU A 50 VAL A 55 C 5 ALA A 121 ? LEU A 122 ? ALA A 120 LEU A 121 D 1 VAL B 80 ? LYS B 84 ? VAL B 79 LYS B 83 D 2 GLU B 70 ? HIS B 74 ? GLU B 69 HIS B 73 D 3 HIS B 97 ? MSE B 100 ? HIS B 96 MSE B 99 D 4 GLU B 51 ? VAL B 56 ? GLU B 50 VAL B 55 D 5 ALA B 121 ? LEU B 122 ? ALA B 120 LEU B 121 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 15 ? N PHE A 14 O ILE B 88 ? O ILE B 87 A 2 3 O ALA B 89 ? O ALA B 88 N TRP B 64 ? N TRP B 63 A 3 4 N GLN B 61 ? N GLN B 60 O ALA B 114 ? O ALA B 113 A 4 5 O SER B 111 ? O SER B 110 N VAL B 42 ? N VAL B 41 A 5 6 O VAL B 41 ? O VAL B 40 N LEU B 34 ? N LEU B 33 B 1 2 N VAL A 33 ? N VAL A 32 O VAL A 41 ? O VAL A 40 B 2 3 N VAL A 42 ? N VAL A 41 O SER A 111 ? O SER A 110 B 3 4 O ALA A 114 ? O ALA A 113 N GLN A 61 ? N GLN A 60 B 4 5 N TRP A 64 ? N TRP A 63 O ALA A 89 ? O ALA A 88 B 5 6 N ILE A 88 ? N ILE A 87 O PHE B 15 ? O PHE B 14 C 1 2 O THR A 81 ? O THR A 80 N TYR A 73 ? N TYR A 72 C 2 3 N GLU A 72 ? N GLU A 71 O MSE A 100 ? O MSE A 99 C 3 4 O ALA A 99 ? O ALA A 98 N ILE A 52 ? N ILE A 51 C 4 5 N VAL A 56 ? N VAL A 55 O ALA A 121 ? O ALA A 120 D 1 2 O THR B 81 ? O THR B 80 N TYR B 73 ? N TYR B 72 D 2 3 N GLU B 72 ? N GLU B 71 O MSE B 100 ? O MSE B 99 D 3 4 O ALA B 99 ? O ALA B 98 N ILE B 52 ? N ILE B 51 D 4 5 N VAL B 56 ? N VAL B 55 O ALA B 121 ? O ALA B 120 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 208 ? 4 'BINDING SITE FOR RESIDUE SO4 A 208' AC2 Software B SO4 209 ? 6 'BINDING SITE FOR RESIDUE SO4 B 209' AC3 Software B GOL 210 ? 6 'BINDING SITE FOR RESIDUE GOL B 210' AC4 Software B 2PE 211 ? 6 'BINDING SITE FOR RESIDUE 2PE B 211' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 59 ? HIS A 58 . ? 1_555 ? 2 AC1 4 ALA A 118 ? ALA A 117 . ? 1_555 ? 3 AC1 4 GLY A 119 ? GLY A 118 . ? 1_555 ? 4 AC1 4 HOH G . ? HOH A 136 . ? 1_555 ? 5 AC2 6 ASN A 5 ? ASN A 4 . ? 1_555 ? 6 AC2 6 THR B 81 ? THR B 80 . ? 1_555 ? 7 AC2 6 HIS B 82 ? HIS B 81 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH B 165 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH B 179 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH B 202 . ? 1_555 ? 11 AC3 6 SER A 24 ? SER A 23 . ? 2_654 ? 12 AC3 6 ASN A 25 ? ASN A 24 . ? 2_654 ? 13 AC3 6 GLY A 26 ? GLY A 25 . ? 2_654 ? 14 AC3 6 HOH G . ? HOH A 172 . ? 2_654 ? 15 AC3 6 GLU B 11 ? GLU B 10 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH B 129 . ? 1_555 ? 17 AC4 6 ARG A 30 ? ARG A 29 . ? 1_565 ? 18 AC4 6 TRP A 44 ? TRP A 43 . ? 1_565 ? 19 AC4 6 ILE A 52 ? ILE A 51 . ? 1_565 ? 20 AC4 6 ALA A 53 ? ALA A 52 . ? 1_565 ? 21 AC4 6 PHE A 120 ? PHE A 119 . ? 1_565 ? 22 AC4 6 ASN B 25 ? ASN B 24 . ? 1_555 ? # _atom_sites.entry_id 3H8U _atom_sites.fract_transf_matrix[1][1] 0.021345 _atom_sites.fract_transf_matrix[1][2] 0.012323 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024647 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010533 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 GLY 3 2 ? ? ? A . n A 1 4 VAL 4 3 3 VAL VAL A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 MSE 6 5 5 MSE MSE A . n A 1 7 ARG 7 6 6 ARG ARG A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 THR 10 9 9 THR THR A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 SER 16 15 15 SER SER A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 GLU 19 18 18 GLU GLU A . n A 1 20 TYR 20 19 19 TYR TYR A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 PRO 23 22 22 PRO PRO A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 PRO 28 27 27 PRO PRO A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 SER 31 30 30 SER SER A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 ASN 37 36 36 ASN ASN A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 SER 39 38 38 SER SER A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 TRP 44 43 43 TRP TRP A . n A 1 45 HIS 45 44 44 HIS HIS A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 HIS 47 46 46 HIS HIS A . n A 1 48 PRO 48 47 47 PRO PRO A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 GLN 50 49 49 GLN GLN A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 ILE 52 51 51 ILE ILE A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 HIS 55 54 54 HIS HIS A . n A 1 56 VAL 56 55 55 VAL VAL A . n A 1 57 HIS 57 56 56 HIS HIS A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 HIS 59 58 58 HIS HIS A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 GLN 61 60 60 GLN GLN A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 THR 63 62 62 THR THR A . n A 1 64 TRP 64 63 63 TRP TRP A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 TYR 73 72 72 TYR TYR A . n A 1 74 HIS 74 73 73 HIS HIS A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 ASN 77 76 76 ASN ASN A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 HIS 82 81 81 HIS HIS A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 ILE 88 87 87 ILE ILE A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 PRO 93 92 92 PRO PRO A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 GLN 95 94 94 GLN GLN A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 HIS 97 96 96 HIS HIS A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 MSE 100 99 99 MSE MSE A . n A 1 101 ASN 101 100 100 ASN ASN A . n A 1 102 SER 102 101 101 SER SER A . n A 1 103 GLY 103 102 102 GLY GLY A . n A 1 104 PRO 104 103 103 PRO PRO A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 PRO 106 105 105 PRO PRO A . n A 1 107 PHE 107 106 106 PHE PHE A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 PHE 109 108 108 PHE PHE A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 SER 111 110 110 SER SER A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 ALA 114 113 113 ALA ALA A . n A 1 115 PRO 115 114 114 PRO PRO A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 ASN 117 116 116 ASN ASN A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 PHE 120 119 119 PHE PHE A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 GLU 124 123 123 GLU GLU A . n A 1 125 LYS 125 124 124 LYS LYS A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 GLY 3 2 ? ? ? B . n B 1 4 VAL 4 3 ? ? ? B . n B 1 5 ASN 5 4 ? ? ? B . n B 1 6 MSE 6 5 ? ? ? B . n B 1 7 ARG 7 6 ? ? ? B . n B 1 8 ALA 8 7 ? ? ? B . n B 1 9 GLU 9 8 ? ? ? B . n B 1 10 THR 10 9 ? ? ? B . n B 1 11 GLU 11 10 10 GLU GLU B . n B 1 12 SER 12 11 11 SER SER B . n B 1 13 ARG 13 12 12 ARG ARG B . n B 1 14 ILE 14 13 13 ILE ILE B . n B 1 15 PHE 15 14 14 PHE PHE B . n B 1 16 SER 16 15 15 SER SER B . n B 1 17 VAL 17 16 16 VAL VAL B . n B 1 18 ASP 18 17 17 ASP ASP B . n B 1 19 GLU 19 18 18 GLU GLU B . n B 1 20 TYR 20 19 19 TYR TYR B . n B 1 21 VAL 21 20 20 VAL VAL B . n B 1 22 ARG 22 21 21 ARG ARG B . n B 1 23 PRO 23 22 22 PRO PRO B . n B 1 24 SER 24 23 23 SER SER B . n B 1 25 ASN 25 24 24 ASN ASN B . n B 1 26 GLY 26 25 25 GLY GLY B . n B 1 27 GLU 27 26 26 GLU GLU B . n B 1 28 PRO 28 27 27 PRO PRO B . n B 1 29 ILE 29 28 28 ILE ILE B . n B 1 30 ARG 30 29 29 ARG ARG B . n B 1 31 SER 31 30 30 SER SER B . n B 1 32 VAL 32 31 31 VAL VAL B . n B 1 33 VAL 33 32 32 VAL VAL B . n B 1 34 LEU 34 33 33 LEU LEU B . n B 1 35 GLU 35 34 34 GLU GLU B . n B 1 36 THR 36 35 35 THR THR B . n B 1 37 ASN 37 36 36 ASN ASN B . n B 1 38 ASP 38 37 37 ASP ASP B . n B 1 39 SER 39 38 38 SER SER B . n B 1 40 VAL 40 39 39 VAL VAL B . n B 1 41 VAL 41 40 40 VAL VAL B . n B 1 42 VAL 42 41 41 VAL VAL B . n B 1 43 VAL 43 42 42 VAL VAL B . n B 1 44 TRP 44 43 43 TRP TRP B . n B 1 45 HIS 45 44 44 HIS HIS B . n B 1 46 ALA 46 45 45 ALA ALA B . n B 1 47 HIS 47 46 46 HIS HIS B . n B 1 48 PRO 48 47 47 PRO PRO B . n B 1 49 GLY 49 48 48 GLY GLY B . n B 1 50 GLN 50 49 49 GLN GLN B . n B 1 51 GLU 51 50 50 GLU GLU B . n B 1 52 ILE 52 51 51 ILE ILE B . n B 1 53 ALA 53 52 52 ALA ALA B . n B 1 54 SER 54 53 53 SER SER B . n B 1 55 HIS 55 54 54 HIS HIS B . n B 1 56 VAL 56 55 55 VAL VAL B . n B 1 57 HIS 57 56 56 HIS HIS B . n B 1 58 PRO 58 57 57 PRO PRO B . n B 1 59 HIS 59 58 58 HIS HIS B . n B 1 60 GLY 60 59 59 GLY GLY B . n B 1 61 GLN 61 60 60 GLN GLN B . n B 1 62 ASP 62 61 61 ASP ASP B . n B 1 63 THR 63 62 62 THR THR B . n B 1 64 TRP 64 63 63 TRP TRP B . n B 1 65 THR 65 64 64 THR THR B . n B 1 66 VAL 66 65 65 VAL VAL B . n B 1 67 ILE 67 66 66 ILE ILE B . n B 1 68 SER 68 67 67 SER SER B . n B 1 69 GLY 69 68 68 GLY GLY B . n B 1 70 GLU 70 69 69 GLU GLU B . n B 1 71 ALA 71 70 70 ALA ALA B . n B 1 72 GLU 72 71 71 GLU GLU B . n B 1 73 TYR 73 72 72 TYR TYR B . n B 1 74 HIS 74 73 73 HIS HIS B . n B 1 75 GLN 75 74 74 GLN GLN B . n B 1 76 GLY 76 75 75 GLY GLY B . n B 1 77 ASN 77 76 76 ASN ASN B . n B 1 78 GLY 78 77 77 GLY GLY B . n B 1 79 ILE 79 78 78 ILE ILE B . n B 1 80 VAL 80 79 79 VAL VAL B . n B 1 81 THR 81 80 80 THR THR B . n B 1 82 HIS 82 81 81 HIS HIS B . n B 1 83 LEU 83 82 82 LEU LEU B . n B 1 84 LYS 84 83 83 LYS LYS B . n B 1 85 ALA 85 84 84 ALA ALA B . n B 1 86 GLY 86 85 85 GLY GLY B . n B 1 87 ASP 87 86 86 ASP ASP B . n B 1 88 ILE 88 87 87 ILE ILE B . n B 1 89 ALA 89 88 88 ALA ALA B . n B 1 90 ILE 90 89 89 ILE ILE B . n B 1 91 ALA 91 90 90 ALA ALA B . n B 1 92 LYS 92 91 91 LYS LYS B . n B 1 93 PRO 93 92 92 PRO PRO B . n B 1 94 GLY 94 93 93 GLY GLY B . n B 1 95 GLN 95 94 94 GLN GLN B . n B 1 96 VAL 96 95 95 VAL VAL B . n B 1 97 HIS 97 96 96 HIS HIS B . n B 1 98 GLY 98 97 97 GLY GLY B . n B 1 99 ALA 99 98 98 ALA ALA B . n B 1 100 MSE 100 99 99 MSE MSE B . n B 1 101 ASN 101 100 100 ASN ASN B . n B 1 102 SER 102 101 101 SER SER B . n B 1 103 GLY 103 102 102 GLY GLY B . n B 1 104 PRO 104 103 103 PRO PRO B . n B 1 105 GLU 105 104 104 GLU GLU B . n B 1 106 PRO 106 105 105 PRO PRO B . n B 1 107 PHE 107 106 106 PHE PHE B . n B 1 108 ILE 108 107 107 ILE ILE B . n B 1 109 PHE 109 108 108 PHE PHE B . n B 1 110 VAL 110 109 109 VAL VAL B . n B 1 111 SER 111 110 110 SER SER B . n B 1 112 VAL 112 111 111 VAL VAL B . n B 1 113 VAL 113 112 112 VAL VAL B . n B 1 114 ALA 114 113 113 ALA ALA B . n B 1 115 PRO 115 114 114 PRO PRO B . n B 1 116 GLY 116 115 115 GLY GLY B . n B 1 117 ASN 117 116 116 ASN ASN B . n B 1 118 ALA 118 117 117 ALA ALA B . n B 1 119 GLY 119 118 118 GLY GLY B . n B 1 120 PHE 120 119 119 PHE PHE B . n B 1 121 ALA 121 120 120 ALA ALA B . n B 1 122 LEU 122 121 121 LEU LEU B . n B 1 123 ALA 123 122 122 ALA ALA B . n B 1 124 GLU 124 123 123 GLU GLU B . n B 1 125 LYS 125 124 124 LYS LYS B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 208 208 SO4 SO4 A . D 2 SO4 1 209 209 SO4 SO4 B . E 3 GOL 1 210 210 GOL GOL B . F 4 2PE 1 211 211 2PE 2PE B . G 5 HOH 1 125 125 HOH HOH A . G 5 HOH 2 126 126 HOH HOH A . G 5 HOH 3 127 2 HOH HOH A . G 5 HOH 4 128 128 HOH HOH A . G 5 HOH 5 129 3 HOH HOH A . G 5 HOH 6 130 130 HOH HOH A . G 5 HOH 7 131 5 HOH HOH A . G 5 HOH 8 132 132 HOH HOH A . G 5 HOH 9 133 133 HOH HOH A . G 5 HOH 10 134 7 HOH HOH A . G 5 HOH 11 135 135 HOH HOH A . G 5 HOH 12 136 8 HOH HOH A . G 5 HOH 13 137 11 HOH HOH A . G 5 HOH 14 138 138 HOH HOH A . G 5 HOH 15 139 13 HOH HOH A . G 5 HOH 16 140 140 HOH HOH A . G 5 HOH 17 141 15 HOH HOH A . G 5 HOH 18 142 16 HOH HOH A . G 5 HOH 19 143 17 HOH HOH A . G 5 HOH 20 144 18 HOH HOH A . G 5 HOH 21 145 145 HOH HOH A . G 5 HOH 22 146 146 HOH HOH A . G 5 HOH 23 147 20 HOH HOH A . G 5 HOH 24 148 148 HOH HOH A . G 5 HOH 25 149 149 HOH HOH A . G 5 HOH 26 150 21 HOH HOH A . G 5 HOH 27 151 151 HOH HOH A . G 5 HOH 28 152 152 HOH HOH A . G 5 HOH 29 153 22 HOH HOH A . G 5 HOH 30 154 24 HOH HOH A . G 5 HOH 31 155 26 HOH HOH A . G 5 HOH 32 156 156 HOH HOH A . G 5 HOH 33 157 28 HOH HOH A . G 5 HOH 34 158 158 HOH HOH A . G 5 HOH 35 159 159 HOH HOH A . G 5 HOH 36 160 160 HOH HOH A . G 5 HOH 37 161 161 HOH HOH A . G 5 HOH 38 162 29 HOH HOH A . G 5 HOH 39 163 31 HOH HOH A . G 5 HOH 40 164 164 HOH HOH A . G 5 HOH 41 165 32 HOH HOH A . G 5 HOH 42 166 33 HOH HOH A . G 5 HOH 43 167 167 HOH HOH A . G 5 HOH 44 168 34 HOH HOH A . G 5 HOH 45 169 169 HOH HOH A . G 5 HOH 46 170 35 HOH HOH A . G 5 HOH 47 171 171 HOH HOH A . G 5 HOH 48 172 172 HOH HOH A . G 5 HOH 49 173 36 HOH HOH A . G 5 HOH 50 174 38 HOH HOH A . G 5 HOH 51 175 41 HOH HOH A . G 5 HOH 52 176 176 HOH HOH A . G 5 HOH 53 177 177 HOH HOH A . G 5 HOH 54 178 42 HOH HOH A . G 5 HOH 55 179 43 HOH HOH A . G 5 HOH 56 180 44 HOH HOH A . G 5 HOH 57 181 181 HOH HOH A . G 5 HOH 58 182 45 HOH HOH A . G 5 HOH 59 183 183 HOH HOH A . G 5 HOH 60 184 47 HOH HOH A . G 5 HOH 61 185 185 HOH HOH A . G 5 HOH 62 186 186 HOH HOH A . G 5 HOH 63 187 49 HOH HOH A . G 5 HOH 64 188 188 HOH HOH A . G 5 HOH 65 189 189 HOH HOH A . G 5 HOH 66 190 51 HOH HOH A . G 5 HOH 67 191 191 HOH HOH A . G 5 HOH 68 192 192 HOH HOH A . G 5 HOH 69 193 52 HOH HOH A . G 5 HOH 70 194 54 HOH HOH A . G 5 HOH 71 195 58 HOH HOH A . G 5 HOH 72 196 62 HOH HOH A . G 5 HOH 73 197 197 HOH HOH A . G 5 HOH 74 198 198 HOH HOH A . G 5 HOH 75 199 64 HOH HOH A . G 5 HOH 76 200 200 HOH HOH A . G 5 HOH 77 201 201 HOH HOH A . G 5 HOH 78 202 66 HOH HOH A . G 5 HOH 79 203 70 HOH HOH A . G 5 HOH 80 204 72 HOH HOH A . G 5 HOH 81 205 205 HOH HOH A . G 5 HOH 82 206 73 HOH HOH A . G 5 HOH 83 207 207 HOH HOH A . G 5 HOH 84 209 75 HOH HOH A . G 5 HOH 85 210 76 HOH HOH A . G 5 HOH 86 211 77 HOH HOH A . G 5 HOH 87 212 79 HOH HOH A . G 5 HOH 88 213 80 HOH HOH A . G 5 HOH 89 214 85 HOH HOH A . G 5 HOH 90 215 90 HOH HOH A . G 5 HOH 91 216 93 HOH HOH A . G 5 HOH 92 217 95 HOH HOH A . G 5 HOH 93 218 100 HOH HOH A . G 5 HOH 94 219 101 HOH HOH A . G 5 HOH 95 220 102 HOH HOH A . G 5 HOH 96 221 104 HOH HOH A . G 5 HOH 97 222 107 HOH HOH A . G 5 HOH 98 223 108 HOH HOH A . G 5 HOH 99 224 110 HOH HOH A . G 5 HOH 100 225 112 HOH HOH A . G 5 HOH 101 226 114 HOH HOH A . G 5 HOH 102 227 116 HOH HOH A . G 5 HOH 103 228 120 HOH HOH A . G 5 HOH 104 229 121 HOH HOH A . G 5 HOH 105 230 122 HOH HOH A . G 5 HOH 106 231 147 HOH HOH A . G 5 HOH 107 232 175 HOH HOH A . H 5 HOH 1 125 1 HOH HOH B . H 5 HOH 2 126 4 HOH HOH B . H 5 HOH 3 127 127 HOH HOH B . H 5 HOH 4 128 6 HOH HOH B . H 5 HOH 5 129 129 HOH HOH B . H 5 HOH 6 130 9 HOH HOH B . H 5 HOH 7 131 131 HOH HOH B . H 5 HOH 8 132 10 HOH HOH B . H 5 HOH 9 133 12 HOH HOH B . H 5 HOH 10 134 134 HOH HOH B . H 5 HOH 11 135 14 HOH HOH B . H 5 HOH 12 136 136 HOH HOH B . H 5 HOH 13 137 137 HOH HOH B . H 5 HOH 14 138 19 HOH HOH B . H 5 HOH 15 139 139 HOH HOH B . H 5 HOH 16 140 23 HOH HOH B . H 5 HOH 17 141 141 HOH HOH B . H 5 HOH 18 142 142 HOH HOH B . H 5 HOH 19 143 143 HOH HOH B . H 5 HOH 20 144 144 HOH HOH B . H 5 HOH 21 145 25 HOH HOH B . H 5 HOH 22 146 27 HOH HOH B . H 5 HOH 23 148 30 HOH HOH B . H 5 HOH 24 149 37 HOH HOH B . H 5 HOH 25 150 150 HOH HOH B . H 5 HOH 26 151 39 HOH HOH B . H 5 HOH 27 152 40 HOH HOH B . H 5 HOH 28 153 153 HOH HOH B . H 5 HOH 29 154 154 HOH HOH B . H 5 HOH 30 155 155 HOH HOH B . H 5 HOH 31 156 46 HOH HOH B . H 5 HOH 32 157 157 HOH HOH B . H 5 HOH 33 158 48 HOH HOH B . H 5 HOH 34 159 50 HOH HOH B . H 5 HOH 35 160 53 HOH HOH B . H 5 HOH 36 161 55 HOH HOH B . H 5 HOH 37 162 162 HOH HOH B . H 5 HOH 38 163 163 HOH HOH B . H 5 HOH 39 164 56 HOH HOH B . H 5 HOH 40 165 165 HOH HOH B . H 5 HOH 41 166 166 HOH HOH B . H 5 HOH 42 167 57 HOH HOH B . H 5 HOH 43 168 168 HOH HOH B . H 5 HOH 44 169 59 HOH HOH B . H 5 HOH 45 170 170 HOH HOH B . H 5 HOH 46 171 60 HOH HOH B . H 5 HOH 47 172 61 HOH HOH B . H 5 HOH 48 173 173 HOH HOH B . H 5 HOH 49 174 174 HOH HOH B . H 5 HOH 50 176 63 HOH HOH B . H 5 HOH 51 177 65 HOH HOH B . H 5 HOH 52 178 178 HOH HOH B . H 5 HOH 53 179 179 HOH HOH B . H 5 HOH 54 180 180 HOH HOH B . H 5 HOH 55 181 67 HOH HOH B . H 5 HOH 56 182 182 HOH HOH B . H 5 HOH 57 183 68 HOH HOH B . H 5 HOH 58 184 184 HOH HOH B . H 5 HOH 59 185 69 HOH HOH B . H 5 HOH 60 186 71 HOH HOH B . H 5 HOH 61 187 187 HOH HOH B . H 5 HOH 62 188 74 HOH HOH B . H 5 HOH 63 189 78 HOH HOH B . H 5 HOH 64 190 190 HOH HOH B . H 5 HOH 65 191 81 HOH HOH B . H 5 HOH 66 192 82 HOH HOH B . H 5 HOH 67 193 193 HOH HOH B . H 5 HOH 68 194 194 HOH HOH B . H 5 HOH 69 195 195 HOH HOH B . H 5 HOH 70 196 196 HOH HOH B . H 5 HOH 71 197 83 HOH HOH B . H 5 HOH 72 198 84 HOH HOH B . H 5 HOH 73 199 199 HOH HOH B . H 5 HOH 74 200 86 HOH HOH B . H 5 HOH 75 201 87 HOH HOH B . H 5 HOH 76 202 202 HOH HOH B . H 5 HOH 77 203 203 HOH HOH B . H 5 HOH 78 204 204 HOH HOH B . H 5 HOH 79 205 88 HOH HOH B . H 5 HOH 80 206 206 HOH HOH B . H 5 HOH 81 207 89 HOH HOH B . H 5 HOH 82 208 91 HOH HOH B . H 5 HOH 83 212 92 HOH HOH B . H 5 HOH 84 213 94 HOH HOH B . H 5 HOH 85 214 96 HOH HOH B . H 5 HOH 86 215 97 HOH HOH B . H 5 HOH 87 216 98 HOH HOH B . H 5 HOH 88 217 99 HOH HOH B . H 5 HOH 89 218 103 HOH HOH B . H 5 HOH 90 219 105 HOH HOH B . H 5 HOH 91 220 106 HOH HOH B . H 5 HOH 92 221 109 HOH HOH B . H 5 HOH 93 222 111 HOH HOH B . H 5 HOH 94 223 113 HOH HOH B . H 5 HOH 95 224 115 HOH HOH B . H 5 HOH 96 225 117 HOH HOH B . H 5 HOH 97 226 118 HOH HOH B . H 5 HOH 98 227 119 HOH HOH B . H 5 HOH 99 228 123 HOH HOH B . H 5 HOH 100 229 124 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 5 ? MET SELENOMETHIONINE 2 A MSE 100 A MSE 99 ? MET SELENOMETHIONINE 3 B MSE 100 B MSE 99 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3820 ? 1 MORE -41 ? 1 'SSA (A^2)' 10870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 16.1990 17.5420 27.3090 -0.1357 -0.1180 -0.2014 -0.0349 -0.0230 0.0465 12.7646 5.0578 2.3682 -4.3906 0.6205 0.5662 -0.2143 0.0569 0.1574 -0.6326 -0.2985 0.3094 0.1464 0.2845 -0.0994 'X-RAY DIFFRACTION' 2 ? refined 22.6150 19.4710 10.9320 -0.2008 -0.1857 -0.2087 -0.0019 0.0006 0.0133 2.2028 0.6139 1.9851 -0.2034 -0.3500 0.3307 -0.0076 -0.0060 0.0136 -0.0044 -0.0979 -0.0893 -0.0718 0.0025 0.1313 'X-RAY DIFFRACTION' 3 ? refined 11.0510 36.3550 9.7540 0.0800 0.0029 -0.0761 0.0702 0.0206 0.0149 12.9662 5.3208 5.4456 -6.1159 -5.8857 3.1716 0.5607 -0.1407 -0.4200 0.0141 0.6840 0.0772 -0.6237 -1.1470 -0.4798 'X-RAY DIFFRACTION' 4 ? refined 4.8280 28.6550 19.2960 -0.1939 -0.1472 -0.1988 -0.0176 -0.0008 -0.0053 1.2823 1.3451 2.2988 -0.4971 -0.7181 0.6055 0.0635 -0.0796 0.0162 -0.0739 0.0980 0.0488 -0.0101 -0.1927 -0.0894 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 3 ? 1 1 A A 30 . . . . ? 'X-RAY DIFFRACTION' 31 ? 2 2 A A 124 . . . . ? 'X-RAY DIFFRACTION' 11 ? 3 3 B B 29 . . . . ? 'X-RAY DIFFRACTION' 30 ? 4 4 B B 124 . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3H8U _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 15 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 OD1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 17 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.91 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 116 ? ? -117.03 67.71 2 1 ASN B 116 ? ? -117.03 53.97 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 3 ? CB ? A VAL 4 CB 2 1 Y 1 A VAL 3 ? CG1 ? A VAL 4 CG1 3 1 Y 1 A VAL 3 ? CG2 ? A VAL 4 CG2 4 1 Y 1 A LYS 83 ? CE ? A LYS 84 CE 5 1 Y 1 A LYS 83 ? NZ ? A LYS 84 NZ 6 1 Y 1 B GLU 10 ? CD ? B GLU 11 CD 7 1 Y 1 B GLU 10 ? OE1 ? B GLU 11 OE1 8 1 Y 1 B GLU 10 ? OE2 ? B GLU 11 OE2 9 1 Y 1 B ASN 24 ? CG ? B ASN 25 CG 10 1 Y 1 B ASN 24 ? OD1 ? B ASN 25 OD1 11 1 Y 1 B ASN 24 ? ND2 ? B ASN 25 ND2 12 1 Y 1 B GLU 26 ? CG ? B GLU 27 CG 13 1 Y 1 B GLU 26 ? CD ? B GLU 27 CD 14 1 Y 1 B GLU 26 ? OE1 ? B GLU 27 OE1 15 1 Y 1 B GLU 26 ? OE2 ? B GLU 27 OE2 16 1 N 1 B 2PE 211 ? C12 ? F 2PE 1 C12 17 1 N 1 B 2PE 211 ? O13 ? F 2PE 1 O13 18 1 N 1 B 2PE 211 ? C14 ? F 2PE 1 C14 19 1 N 1 B 2PE 211 ? C15 ? F 2PE 1 C15 20 1 N 1 B 2PE 211 ? O16 ? F 2PE 1 O16 21 1 N 1 B 2PE 211 ? C17 ? F 2PE 1 C17 22 1 N 1 B 2PE 211 ? C18 ? F 2PE 1 C18 23 1 N 1 B 2PE 211 ? O19 ? F 2PE 1 O19 24 1 N 1 B 2PE 211 ? C20 ? F 2PE 1 C20 25 1 N 1 B 2PE 211 ? C21 ? F 2PE 1 C21 26 1 N 1 B 2PE 211 ? O22 ? F 2PE 1 O22 27 1 N 1 B 2PE 211 ? C23 ? F 2PE 1 C23 28 1 N 1 B 2PE 211 ? C24 ? F 2PE 1 C24 29 1 N 1 B 2PE 211 ? O25 ? F 2PE 1 O25 30 1 N 1 B 2PE 211 ? C26 ? F 2PE 1 C26 31 1 N 1 B 2PE 211 ? C27 ? F 2PE 1 C27 32 1 N 1 B 2PE 211 ? O28 ? F 2PE 1 O28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A GLY 2 ? A GLY 3 4 1 Y 1 B GLY 0 ? B GLY 1 5 1 Y 1 B MSE 1 ? B MSE 2 6 1 Y 1 B GLY 2 ? B GLY 3 7 1 Y 1 B VAL 3 ? B VAL 4 8 1 Y 1 B ASN 4 ? B ASN 5 9 1 Y 1 B MSE 5 ? B MSE 6 10 1 Y 1 B ARG 6 ? B ARG 7 11 1 Y 1 B ALA 7 ? B ALA 8 12 1 Y 1 B GLU 8 ? B GLU 9 13 1 Y 1 B THR 9 ? B THR 10 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 'NONAETHYLENE GLYCOL' 2PE 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #