HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-APR-09 3H8U TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN WITH DOUBLE- TITLE 2 STRANDED BETA-HELIX DOMAIN (YP_001338853.1) FROM KLEBSIELLA TITLE 3 PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED CONSERVED PROTEIN WITH DOUBLE-STRANDED COMPND 3 BETA-HELIX DOMAIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH SOURCE 3 78578; SOURCE 4 ORGANISM_TAXID: 272620; SOURCE 5 GENE: KPN78578_51600, KPN_PKPN5P08243, YP_001338853.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001338853.1, UNCHARACTERIZED CONSERVED PROTEIN WITH DOUBLE- KEYWDS 2 STRANDED BETA-HELIX DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 4 CUPIN DOMAIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3H8U 1 REMARK SEQADV REVDAT 4 24-JUL-19 3H8U 1 REMARK LINK REVDAT 3 25-OCT-17 3H8U 1 REMARK REVDAT 2 13-JUL-11 3H8U 1 VERSN REVDAT 1 12-MAY-09 3H8U 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN WITH JRNL TITL 2 DOUBLE-STRANDED BETA-HELIX DOMAIN (YP_001338853.1) FROM JRNL TITL 3 KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578 AT 1.80 A JRNL TITL 4 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1044 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1480 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1925 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1685 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2645 ; 1.509 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3934 ; 0.774 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 6.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;31.571 ;24.535 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 271 ;11.939 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 8.859 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 288 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2223 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 372 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 308 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1706 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 871 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1201 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.127 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 75 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.138 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1238 ; 0.756 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 501 ; 0.214 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1986 ; 1.214 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 753 ; 1.995 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 650 ; 3.213 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1990 17.5420 27.3090 REMARK 3 T TENSOR REMARK 3 T11: -0.1357 T22: -0.1180 REMARK 3 T33: -0.2014 T12: -0.0349 REMARK 3 T13: -0.0230 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 12.7646 L22: 5.0578 REMARK 3 L33: 2.3682 L12: -4.3906 REMARK 3 L13: 0.6205 L23: 0.5662 REMARK 3 S TENSOR REMARK 3 S11: -0.2143 S12: -0.6326 S13: -0.2985 REMARK 3 S21: 0.1464 S22: 0.0569 S23: 0.3094 REMARK 3 S31: 0.2845 S32: -0.0994 S33: 0.1574 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6150 19.4710 10.9320 REMARK 3 T TENSOR REMARK 3 T11: -0.2008 T22: -0.1857 REMARK 3 T33: -0.2087 T12: -0.0019 REMARK 3 T13: 0.0006 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.2028 L22: 0.6139 REMARK 3 L33: 1.9851 L12: -0.2034 REMARK 3 L13: -0.3500 L23: 0.3307 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.0044 S13: -0.0979 REMARK 3 S21: -0.0718 S22: -0.0060 S23: -0.0893 REMARK 3 S31: 0.0025 S32: 0.1313 S33: 0.0136 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0510 36.3550 9.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.0029 REMARK 3 T33: -0.0761 T12: 0.0702 REMARK 3 T13: 0.0206 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 12.9662 L22: 5.3208 REMARK 3 L33: 5.4456 L12: -6.1159 REMARK 3 L13: -5.8857 L23: 3.1716 REMARK 3 S TENSOR REMARK 3 S11: 0.5607 S12: 0.0141 S13: 0.6840 REMARK 3 S21: -0.6237 S22: -0.1407 S23: 0.0772 REMARK 3 S31: -1.1470 S32: -0.4798 S33: -0.4200 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8280 28.6550 19.2960 REMARK 3 T TENSOR REMARK 3 T11: -0.1939 T22: -0.1472 REMARK 3 T33: -0.1988 T12: -0.0176 REMARK 3 T13: -0.0008 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.2823 L22: 1.3451 REMARK 3 L33: 2.2988 L12: -0.4971 REMARK 3 L13: -0.7181 L23: 0.6055 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.0739 S13: 0.0980 REMARK 3 S21: -0.0101 S22: -0.0796 S23: 0.0488 REMARK 3 S31: -0.1927 S32: -0.0894 S33: 0.0162 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 A SULPHATE CATION, GLYCEROL AND PEG FRAGMNET (2PE) MOLECULES REMARK 3 FROM THE CRYSTALLIZATION CONDITIONS HAVE BEEN MODELED IN THE REMARK 3 STRUCTURE. REMARK 4 REMARK 4 3H8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97965 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 24.953 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.860 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7000M (NH4)2SO4, 15.0000% GLYCEROL, REMARK 280 1.7000% PEG-400, 0.1M HEPES PH 7.5, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.29333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.64667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY DATA SUPPORTS ASSIGNMENT OF A REMARK 300 DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 VAL B 3 REMARK 465 ASN B 4 REMARK 465 MSE B 5 REMARK 465 ARG B 6 REMARK 465 ALA B 7 REMARK 465 GLU B 8 REMARK 465 THR B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CB CG1 CG2 REMARK 470 LYS A 83 CE NZ REMARK 470 GLU B 10 CD OE1 OE2 REMARK 470 ASN B 24 CG OD1 ND2 REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 15 OD1 ASP A 17 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 116 67.71 -117.03 REMARK 500 ASN B 116 53.97 -117.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE B 211 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE B 211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391713 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3H8U A 1 124 UNP A6TJ50 A6TJ50_KLEP7 1 124 DBREF 3H8U B 1 124 UNP A6TJ50 A6TJ50_KLEP7 1 124 SEQADV 3H8U GLY A 0 UNP A6TJ50 EXPRESSION TAG SEQADV 3H8U GLY B 0 UNP A6TJ50 EXPRESSION TAG SEQRES 1 A 125 GLY MSE GLY VAL ASN MSE ARG ALA GLU THR GLU SER ARG SEQRES 2 A 125 ILE PHE SER VAL ASP GLU TYR VAL ARG PRO SER ASN GLY SEQRES 3 A 125 GLU PRO ILE ARG SER VAL VAL LEU GLU THR ASN ASP SER SEQRES 4 A 125 VAL VAL VAL VAL TRP HIS ALA HIS PRO GLY GLN GLU ILE SEQRES 5 A 125 ALA SER HIS VAL HIS PRO HIS GLY GLN ASP THR TRP THR SEQRES 6 A 125 VAL ILE SER GLY GLU ALA GLU TYR HIS GLN GLY ASN GLY SEQRES 7 A 125 ILE VAL THR HIS LEU LYS ALA GLY ASP ILE ALA ILE ALA SEQRES 8 A 125 LYS PRO GLY GLN VAL HIS GLY ALA MSE ASN SER GLY PRO SEQRES 9 A 125 GLU PRO PHE ILE PHE VAL SER VAL VAL ALA PRO GLY ASN SEQRES 10 A 125 ALA GLY PHE ALA LEU ALA GLU LYS SEQRES 1 B 125 GLY MSE GLY VAL ASN MSE ARG ALA GLU THR GLU SER ARG SEQRES 2 B 125 ILE PHE SER VAL ASP GLU TYR VAL ARG PRO SER ASN GLY SEQRES 3 B 125 GLU PRO ILE ARG SER VAL VAL LEU GLU THR ASN ASP SER SEQRES 4 B 125 VAL VAL VAL VAL TRP HIS ALA HIS PRO GLY GLN GLU ILE SEQRES 5 B 125 ALA SER HIS VAL HIS PRO HIS GLY GLN ASP THR TRP THR SEQRES 6 B 125 VAL ILE SER GLY GLU ALA GLU TYR HIS GLN GLY ASN GLY SEQRES 7 B 125 ILE VAL THR HIS LEU LYS ALA GLY ASP ILE ALA ILE ALA SEQRES 8 B 125 LYS PRO GLY GLN VAL HIS GLY ALA MSE ASN SER GLY PRO SEQRES 9 B 125 GLU PRO PHE ILE PHE VAL SER VAL VAL ALA PRO GLY ASN SEQRES 10 B 125 ALA GLY PHE ALA LEU ALA GLU LYS MODRES 3H8U MSE A 5 MET SELENOMETHIONINE MODRES 3H8U MSE A 99 MET SELENOMETHIONINE MODRES 3H8U MSE B 99 MET SELENOMETHIONINE HET MSE A 5 8 HET MSE A 99 8 HET MSE B 99 8 HET SO4 A 208 5 HET SO4 B 209 5 HET GOL B 210 6 HET 2PE B 211 11 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM 2PE NONAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 2PE C18 H38 O10 FORMUL 7 HOH *207(H2 O) HELIX 1 1 VAL A 16 VAL A 20 1 5 HELIX 2 2 VAL B 16 VAL B 20 1 5 SHEET 1 A 6 ILE A 13 SER A 15 0 SHEET 2 A 6 ASP B 86 ALA B 90 -1 O ILE B 87 N PHE A 14 SHEET 3 A 6 GLN B 60 SER B 67 -1 N TRP B 63 O ALA B 88 SHEET 4 A 6 PHE B 106 ALA B 113 -1 O ALA B 113 N GLN B 60 SHEET 5 A 6 VAL B 39 ALA B 45 -1 N VAL B 41 O SER B 110 SHEET 6 A 6 SER B 30 GLU B 34 -1 N LEU B 33 O VAL B 40 SHEET 1 B 6 SER A 30 GLU A 34 0 SHEET 2 B 6 VAL A 39 ALA A 45 -1 O VAL A 40 N VAL A 32 SHEET 3 B 6 PHE A 106 ALA A 113 -1 O SER A 110 N VAL A 41 SHEET 4 B 6 GLN A 60 SER A 67 -1 N GLN A 60 O ALA A 113 SHEET 5 B 6 ASP A 86 ALA A 90 -1 O ALA A 88 N TRP A 63 SHEET 6 B 6 ILE B 13 SER B 15 -1 O PHE B 14 N ILE A 87 SHEET 1 C 5 VAL A 79 LYS A 83 0 SHEET 2 C 5 GLU A 69 HIS A 73 -1 N TYR A 72 O THR A 80 SHEET 3 C 5 HIS A 96 ASN A 100 -1 O MSE A 99 N GLU A 71 SHEET 4 C 5 GLU A 50 VAL A 55 -1 N ILE A 51 O ALA A 98 SHEET 5 C 5 ALA A 120 LEU A 121 -1 O ALA A 120 N VAL A 55 SHEET 1 D 5 VAL B 79 LYS B 83 0 SHEET 2 D 5 GLU B 69 HIS B 73 -1 N TYR B 72 O THR B 80 SHEET 3 D 5 HIS B 96 MSE B 99 -1 O MSE B 99 N GLU B 71 SHEET 4 D 5 GLU B 50 VAL B 55 -1 N ILE B 51 O ALA B 98 SHEET 5 D 5 ALA B 120 LEU B 121 -1 O ALA B 120 N VAL B 55 LINK C ASN A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N ARG A 6 1555 1555 1.33 LINK C ALA A 98 N MSE A 99 1555 1555 1.34 LINK C MSE A 99 N ASN A 100 1555 1555 1.34 LINK C ALA B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N ASN B 100 1555 1555 1.34 CISPEP 1 GLY A 102 PRO A 103 0 1.92 CISPEP 2 ALA A 113 PRO A 114 0 -1.78 CISPEP 3 ALA B 113 PRO B 114 0 1.06 SITE 1 AC1 4 HIS A 58 ALA A 117 GLY A 118 HOH A 136 SITE 1 AC2 6 ASN A 4 THR B 80 HIS B 81 HOH B 165 SITE 2 AC2 6 HOH B 179 HOH B 202 SITE 1 AC3 6 SER A 23 ASN A 24 GLY A 25 HOH A 172 SITE 2 AC3 6 GLU B 10 HOH B 129 SITE 1 AC4 6 ARG A 29 TRP A 43 ILE A 51 ALA A 52 SITE 2 AC4 6 PHE A 119 ASN B 24 CRYST1 46.850 46.850 94.940 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021345 0.012323 0.000000 0.00000 SCALE2 0.000000 0.024647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010533 0.00000