data_3H91 # _entry.id 3H91 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3H91 RCSB RCSB052844 WWPDB D_1000052844 # _pdbx_database_status.entry_id 3H91 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Amaya, M.F.' 1 'Ravichandran, M.' 2 'Loppnau, P.' 3 'Kozieradzki, I.' 4 'Edwards, A.M.' 5 'Arrowsmith, C.H.' 6 'Weigelt, J.' 7 'Bountra, C.' 8 'Bochkarev, A.' 9 'Min, J.' 10 'Ouyang, H.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title 'Recognition and specificity determinants of the human cbx chromodomains.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 521 _citation.page_last 529 _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21047797 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.191411 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kaustov, L.' 1 primary 'Ouyang, H.' 2 primary 'Amaya, M.' 3 primary 'Lemak, A.' 4 primary 'Nady, N.' 5 primary 'Duan, S.' 6 primary 'Wasney, G.A.' 7 primary 'Li, Z.' 8 primary 'Vedadi, M.' 9 primary 'Schapira, M.' 10 primary 'Min, J.' 11 primary 'Arrowsmith, C.H.' 12 # _cell.length_a 58.145 _cell.length_b 84.013 _cell.length_c 65.499 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3H91 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3H91 _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chromobox protein homolog 2' 6511.553 2 ? ? 'UNP residues 9-62' ? 2 polymer syn 'H3K27 peptide' 1515.776 2 ? ? ? ? 3 water nat water 18.015 152 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE A,B ? 2 'polypeptide(L)' no yes 'QLATKAAR(M3L)SAPATG' QLATKAARKSAPATG C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLN n 1 3 VAL n 1 4 PHE n 1 5 ALA n 1 6 ALA n 1 7 GLU n 1 8 CYS n 1 9 ILE n 1 10 LEU n 1 11 SER n 1 12 LYS n 1 13 ARG n 1 14 LEU n 1 15 ARG n 1 16 LYS n 1 17 GLY n 1 18 LYS n 1 19 LEU n 1 20 GLU n 1 21 TYR n 1 22 LEU n 1 23 VAL n 1 24 LYS n 1 25 TRP n 1 26 ARG n 1 27 GLY n 1 28 TRP n 1 29 SER n 1 30 SER n 1 31 LYS n 1 32 HIS n 1 33 ASN n 1 34 SER n 1 35 TRP n 1 36 GLU n 1 37 PRO n 1 38 GLU n 1 39 GLU n 1 40 ASN n 1 41 ILE n 1 42 LEU n 1 43 ASP n 1 44 PRO n 1 45 ARG n 1 46 LEU n 1 47 LEU n 1 48 LEU n 1 49 ALA n 1 50 PHE n 1 51 GLN n 1 52 LYS n 1 53 LYS n 1 54 GLU n 2 1 GLN n 2 2 LEU n 2 3 ALA n 2 4 THR n 2 5 LYS n 2 6 ALA n 2 7 ALA n 2 8 ARG n 2 9 M3L n 2 10 SER n 2 11 ALA n 2 12 PRO n 2 13 ALA n 2 14 THR n 2 15 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CBX2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CBX2_HUMAN Q14781 1 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 9 ? 2 PDB 3H91 3H91 2 QLATKAARKSAPATG 19 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3H91 A 1 ? 54 ? Q14781 9 ? 62 ? 9 62 2 1 3H91 B 1 ? 54 ? Q14781 9 ? 62 ? 9 62 3 2 3H91 C 1 ? 15 ? 3H91 19 ? 33 ? 19 33 4 2 3H91 D 1 ? 15 ? 3H91 19 ? 33 ? 19 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3H91 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30% PEG3350, 0.1 M Tris, pH8.5, 0.2M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2009-01-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.pdbx_synchrotron_site CLSI _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97934 # _reflns.entry_id 3H91 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.200 _reflns.number_obs 26030 _reflns.number_all ? _reflns.percent_possible_obs 93.800 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 38.995 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.100 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.20 1.24 61.70 0.695 ? ? 3.30 ? ? ? ? ? ? ? 1 1.24 1.29 81.90 0.731 ? ? 4.20 ? ? ? ? ? ? ? 2 1.29 1.35 95.60 0.708 ? ? 5.80 ? ? ? ? ? ? ? 3 1.35 1.42 99.30 0.529 ? ? 7.80 ? ? ? ? ? ? ? 4 1.42 1.51 100.00 0.364 ? ? 9.10 ? ? ? ? ? ? ? 5 1.51 1.63 100.00 0.216 ? ? 9.40 ? ? ? ? ? ? ? 6 1.63 1.79 100.00 0.118 ? ? 9.60 ? ? ? ? ? ? ? 7 1.79 2.05 100.00 0.070 ? ? 9.80 ? ? ? ? ? ? ? 8 2.05 2.59 100.00 0.042 ? ? 9.90 ? ? ? ? ? ? ? 9 2.59 50.00 99.20 0.022 ? ? 9.50 ? ? ? ? ? ? ? 10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3H91 _refine.ls_number_reflns_obs 24729 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.99 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.80 _refine.ls_R_factor_obs 0.21015 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20945 _refine.ls_R_factor_R_free 0.22299 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1294 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.50 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 16.163 _refine.aniso_B[1][1] 0.57 _refine.aniso_B[2][2] -0.60 _refine.aniso_B[3][3] 0.03 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.079 _refine.pdbx_overall_ESU_R_Free 0.075 _refine.overall_SU_ML 0.047 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.204 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1014 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 1166 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 19.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1080 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.461 1.978 ? 1460 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.588 5.000 ? 130 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 20.634 22.609 ? 46 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.001 15.000 ? 204 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.836 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.130 0.200 ? 156 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 790 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.190 0.200 ? 420 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 725 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.148 0.200 ? 101 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.335 0.200 ? 40 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.126 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.089 1.500 ? 659 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.673 2.000 ? 1027 'X-RAY DIFFRACTION' ? r_scbond_it 2.443 3.000 ? 492 'X-RAY DIFFRACTION' ? r_scangle_it 3.418 4.500 ? 433 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_R_work 1808 _refine_ls_shell.R_factor_R_work 0.226 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3H91 _struct.title 'Crystal structure of the complex of human chromobox homolog 2 (CBX2) and H3K27 peptide' _struct.pdbx_descriptor 'Chromobox protein homolog 2, H3K27 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3H91 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;human chromobox homolog 2, CBX2, H3K27, Structural Genomics, Structural Genomics Consortium, SGC, Chromatin regulator, DNA-binding, Nucleus, Repressor, Transcription, Transcription regulation ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 29 ? ASN A 33 ? SER A 37 ASN A 41 5 ? 5 HELX_P HELX_P2 2 GLU A 39 ? ILE A 41 ? GLU A 47 ILE A 49 5 ? 3 HELX_P HELX_P3 3 PRO A 44 ? LYS A 52 ? PRO A 52 LYS A 60 1 ? 9 HELX_P HELX_P4 4 SER B 29 ? ASN B 33 ? SER B 37 ASN B 41 5 ? 5 HELX_P HELX_P5 5 GLU B 39 ? ILE B 41 ? GLU B 47 ILE B 49 5 ? 3 HELX_P HELX_P6 6 PRO B 44 ? GLN B 51 ? PRO B 52 GLN B 59 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 8 SG A ? ? 1_555 A CYS 8 SG A ? A CYS 16 A CYS 16 3_555 ? ? ? ? ? ? ? 2.106 ? disulf2 disulf ? ? A CYS 8 SG B ? ? 1_555 A CYS 8 SG B ? A CYS 16 A CYS 16 3_555 ? ? ? ? ? ? ? 2.169 ? disulf3 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 8 SG ? ? B CYS 16 B CYS 16 3_555 ? ? ? ? ? ? ? 2.102 ? covale1 covale ? ? C ARG 8 C ? ? ? 1_555 C M3L 9 N ? ? C ARG 26 C M3L 27 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? C M3L 9 C ? ? ? 1_555 C SER 10 N ? ? C M3L 27 C SER 28 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? D ARG 8 C ? ? ? 1_555 D M3L 9 N ? ? D ARG 26 D M3L 27 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? D M3L 9 C ? ? ? 1_555 D SER 10 N ? ? D M3L 27 D SER 28 1_555 ? ? ? ? ? ? ? 1.328 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 34 ? PRO A 37 ? SER A 42 PRO A 45 A 2 LYS A 18 ? TRP A 25 ? LYS A 26 TRP A 33 A 3 VAL A 3 ? ARG A 15 ? VAL A 11 ARG A 23 A 4 ALA C 6 ? ARG C 8 ? ALA C 24 ARG C 26 B 1 SER B 34 ? PRO B 37 ? SER B 42 PRO B 45 B 2 LYS B 18 ? TRP B 25 ? LYS B 26 TRP B 33 B 3 VAL B 3 ? ARG B 15 ? VAL B 11 ARG B 23 B 4 ALA D 6 ? ARG D 8 ? ALA D 24 ARG D 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 34 ? O SER A 42 N VAL A 23 ? N VAL A 31 A 2 3 O LEU A 22 ? O LEU A 30 N LEU A 10 ? N LEU A 18 A 3 4 N PHE A 4 ? N PHE A 12 O ALA C 7 ? O ALA C 25 B 1 2 O GLU B 36 ? O GLU B 44 N TYR B 21 ? N TYR B 29 B 2 3 O LEU B 22 ? O LEU B 30 N LEU B 10 ? N LEU B 18 B 3 4 N PHE B 4 ? N PHE B 12 O ALA D 7 ? O ALA D 25 # _atom_sites.entry_id 3H91 _atom_sites.fract_transf_matrix[1][1] 0.017198 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011903 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015267 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 9 9 GLU GLU A . n A 1 2 GLN 2 10 10 GLN GLN A . n A 1 3 VAL 3 11 11 VAL VAL A . n A 1 4 PHE 4 12 12 PHE PHE A . n A 1 5 ALA 5 13 13 ALA ALA A . n A 1 6 ALA 6 14 14 ALA ALA A . n A 1 7 GLU 7 15 15 GLU GLU A . n A 1 8 CYS 8 16 16 CYS CYS A . n A 1 9 ILE 9 17 17 ILE ILE A . n A 1 10 LEU 10 18 18 LEU LEU A . n A 1 11 SER 11 19 19 SER SER A . n A 1 12 LYS 12 20 20 LYS LYS A . n A 1 13 ARG 13 21 21 ARG ARG A . n A 1 14 LEU 14 22 22 LEU LEU A . n A 1 15 ARG 15 23 23 ARG ARG A . n A 1 16 LYS 16 24 24 LYS LYS A . n A 1 17 GLY 17 25 25 GLY GLY A . n A 1 18 LYS 18 26 26 LYS LYS A . n A 1 19 LEU 19 27 27 LEU LEU A . n A 1 20 GLU 20 28 28 GLU GLU A . n A 1 21 TYR 21 29 29 TYR TYR A . n A 1 22 LEU 22 30 30 LEU LEU A . n A 1 23 VAL 23 31 31 VAL VAL A . n A 1 24 LYS 24 32 32 LYS LYS A . n A 1 25 TRP 25 33 33 TRP TRP A . n A 1 26 ARG 26 34 34 ARG ARG A . n A 1 27 GLY 27 35 35 GLY GLY A . n A 1 28 TRP 28 36 36 TRP TRP A . n A 1 29 SER 29 37 37 SER SER A . n A 1 30 SER 30 38 38 SER SER A . n A 1 31 LYS 31 39 39 LYS LYS A . n A 1 32 HIS 32 40 40 HIS HIS A . n A 1 33 ASN 33 41 41 ASN ASN A . n A 1 34 SER 34 42 42 SER SER A . n A 1 35 TRP 35 43 43 TRP TRP A . n A 1 36 GLU 36 44 44 GLU GLU A . n A 1 37 PRO 37 45 45 PRO PRO A . n A 1 38 GLU 38 46 46 GLU GLU A . n A 1 39 GLU 39 47 47 GLU GLU A . n A 1 40 ASN 40 48 48 ASN ASN A . n A 1 41 ILE 41 49 49 ILE ILE A . n A 1 42 LEU 42 50 50 LEU LEU A . n A 1 43 ASP 43 51 51 ASP ASP A . n A 1 44 PRO 44 52 52 PRO PRO A . n A 1 45 ARG 45 53 53 ARG ARG A . n A 1 46 LEU 46 54 54 LEU LEU A . n A 1 47 LEU 47 55 55 LEU LEU A . n A 1 48 LEU 48 56 56 LEU LEU A . n A 1 49 ALA 49 57 57 ALA ALA A . n A 1 50 PHE 50 58 58 PHE PHE A . n A 1 51 GLN 51 59 59 GLN GLN A . n A 1 52 LYS 52 60 60 LYS LYS A . n A 1 53 LYS 53 61 ? ? ? A . n A 1 54 GLU 54 62 ? ? ? A . n B 1 1 GLU 1 9 9 GLU GLU B . n B 1 2 GLN 2 10 10 GLN GLN B . n B 1 3 VAL 3 11 11 VAL VAL B . n B 1 4 PHE 4 12 12 PHE PHE B . n B 1 5 ALA 5 13 13 ALA ALA B . n B 1 6 ALA 6 14 14 ALA ALA B . n B 1 7 GLU 7 15 15 GLU GLU B . n B 1 8 CYS 8 16 16 CYS CYS B . n B 1 9 ILE 9 17 17 ILE ILE B . n B 1 10 LEU 10 18 18 LEU LEU B . n B 1 11 SER 11 19 19 SER SER B . n B 1 12 LYS 12 20 20 LYS LYS B . n B 1 13 ARG 13 21 21 ARG ARG B . n B 1 14 LEU 14 22 22 LEU LEU B . n B 1 15 ARG 15 23 23 ARG ARG B . n B 1 16 LYS 16 24 24 LYS LYS B . n B 1 17 GLY 17 25 25 GLY GLY B . n B 1 18 LYS 18 26 26 LYS LYS B . n B 1 19 LEU 19 27 27 LEU LEU B . n B 1 20 GLU 20 28 28 GLU GLU B . n B 1 21 TYR 21 29 29 TYR TYR B . n B 1 22 LEU 22 30 30 LEU LEU B . n B 1 23 VAL 23 31 31 VAL VAL B . n B 1 24 LYS 24 32 32 LYS LYS B . n B 1 25 TRP 25 33 33 TRP TRP B . n B 1 26 ARG 26 34 34 ARG ARG B . n B 1 27 GLY 27 35 35 GLY GLY B . n B 1 28 TRP 28 36 36 TRP TRP B . n B 1 29 SER 29 37 37 SER SER B . n B 1 30 SER 30 38 38 SER SER B . n B 1 31 LYS 31 39 39 LYS LYS B . n B 1 32 HIS 32 40 40 HIS HIS B . n B 1 33 ASN 33 41 41 ASN ASN B . n B 1 34 SER 34 42 42 SER SER B . n B 1 35 TRP 35 43 43 TRP TRP B . n B 1 36 GLU 36 44 44 GLU GLU B . n B 1 37 PRO 37 45 45 PRO PRO B . n B 1 38 GLU 38 46 46 GLU GLU B . n B 1 39 GLU 39 47 47 GLU GLU B . n B 1 40 ASN 40 48 48 ASN ASN B . n B 1 41 ILE 41 49 49 ILE ILE B . n B 1 42 LEU 42 50 50 LEU LEU B . n B 1 43 ASP 43 51 51 ASP ASP B . n B 1 44 PRO 44 52 52 PRO PRO B . n B 1 45 ARG 45 53 53 ARG ARG B . n B 1 46 LEU 46 54 54 LEU LEU B . n B 1 47 LEU 47 55 55 LEU LEU B . n B 1 48 LEU 48 56 56 LEU LEU B . n B 1 49 ALA 49 57 57 ALA ALA B . n B 1 50 PHE 50 58 58 PHE PHE B . n B 1 51 GLN 51 59 59 GLN GLN B . n B 1 52 LYS 52 60 60 LYS LYS B . n B 1 53 LYS 53 61 ? ? ? B . n B 1 54 GLU 54 62 ? ? ? B . n C 2 1 GLN 1 19 ? ? ? C . n C 2 2 LEU 2 20 20 LEU LEU C . n C 2 3 ALA 3 21 21 ALA ALA C . n C 2 4 THR 4 22 22 THR THR C . n C 2 5 LYS 5 23 23 LYS LYS C . n C 2 6 ALA 6 24 24 ALA ALA C . n C 2 7 ALA 7 25 25 ALA ALA C . n C 2 8 ARG 8 26 26 ARG ARG C . n C 2 9 M3L 9 27 27 M3L M3L C . n C 2 10 SER 10 28 28 SER SER C . n C 2 11 ALA 11 29 ? ? ? C . n C 2 12 PRO 12 30 ? ? ? C . n C 2 13 ALA 13 31 ? ? ? C . n C 2 14 THR 14 32 ? ? ? C . n C 2 15 GLY 15 33 ? ? ? C . n D 2 1 GLN 1 19 ? ? ? D . n D 2 2 LEU 2 20 20 LEU LEU D . n D 2 3 ALA 3 21 21 ALA ALA D . n D 2 4 THR 4 22 22 THR THR D . n D 2 5 LYS 5 23 23 LYS LYS D . n D 2 6 ALA 6 24 24 ALA ALA D . n D 2 7 ALA 7 25 25 ALA ALA D . n D 2 8 ARG 8 26 26 ARG ARG D . n D 2 9 M3L 9 27 27 M3L M3L D . n D 2 10 SER 10 28 28 SER SER D . n D 2 11 ALA 11 29 ? ? ? D . n D 2 12 PRO 12 30 ? ? ? D . n D 2 13 ALA 13 31 ? ? ? D . n D 2 14 THR 14 32 ? ? ? D . n D 2 15 GLY 15 33 ? ? ? D . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 1 1 HOH HOH A . E 3 HOH 2 3 3 HOH HOH A . E 3 HOH 3 4 4 HOH HOH A . E 3 HOH 4 5 5 HOH HOH A . E 3 HOH 5 63 9 HOH HOH A . E 3 HOH 6 64 11 HOH HOH A . E 3 HOH 7 65 65 HOH HOH A . E 3 HOH 8 66 12 HOH HOH A . E 3 HOH 9 67 15 HOH HOH A . E 3 HOH 10 68 17 HOH HOH A . E 3 HOH 11 69 69 HOH HOH A . E 3 HOH 12 70 18 HOH HOH A . E 3 HOH 13 71 21 HOH HOH A . E 3 HOH 14 72 23 HOH HOH A . E 3 HOH 15 73 25 HOH HOH A . E 3 HOH 16 74 74 HOH HOH A . E 3 HOH 17 75 26 HOH HOH A . E 3 HOH 18 76 76 HOH HOH A . E 3 HOH 19 77 29 HOH HOH A . E 3 HOH 20 78 78 HOH HOH A . E 3 HOH 21 79 79 HOH HOH A . E 3 HOH 22 80 33 HOH HOH A . E 3 HOH 23 81 36 HOH HOH A . E 3 HOH 24 82 82 HOH HOH A . E 3 HOH 25 83 37 HOH HOH A . E 3 HOH 26 84 38 HOH HOH A . E 3 HOH 27 85 41 HOH HOH A . E 3 HOH 28 86 42 HOH HOH A . E 3 HOH 29 87 87 HOH HOH A . E 3 HOH 30 88 88 HOH HOH A . E 3 HOH 31 89 45 HOH HOH A . E 3 HOH 32 90 46 HOH HOH A . E 3 HOH 33 91 48 HOH HOH A . E 3 HOH 34 92 52 HOH HOH A . E 3 HOH 35 93 55 HOH HOH A . E 3 HOH 36 94 56 HOH HOH A . E 3 HOH 37 95 57 HOH HOH A . E 3 HOH 38 96 96 HOH HOH A . E 3 HOH 39 97 97 HOH HOH A . E 3 HOH 40 98 59 HOH HOH A . E 3 HOH 41 99 99 HOH HOH A . E 3 HOH 42 100 61 HOH HOH A . E 3 HOH 43 107 107 HOH HOH A . E 3 HOH 44 110 110 HOH HOH A . E 3 HOH 45 112 112 HOH HOH A . E 3 HOH 46 116 116 HOH HOH A . E 3 HOH 47 123 123 HOH HOH A . E 3 HOH 48 126 126 HOH HOH A . E 3 HOH 49 127 127 HOH HOH A . E 3 HOH 50 128 128 HOH HOH A . E 3 HOH 51 132 132 HOH HOH A . E 3 HOH 52 133 133 HOH HOH A . E 3 HOH 53 138 138 HOH HOH A . E 3 HOH 54 152 152 HOH HOH A . E 3 HOH 55 153 153 HOH HOH A . E 3 HOH 56 157 157 HOH HOH A . E 3 HOH 57 162 162 HOH HOH A . E 3 HOH 58 166 166 HOH HOH A . E 3 HOH 59 232 232 HOH HOH A . E 3 HOH 60 233 233 HOH HOH A . E 3 HOH 61 234 234 HOH HOH A . E 3 HOH 62 237 237 HOH HOH A . E 3 HOH 63 240 240 HOH HOH A . E 3 HOH 64 248 248 HOH HOH A . E 3 HOH 65 285 285 HOH HOH A . F 3 HOH 1 2 2 HOH HOH B . F 3 HOH 2 6 6 HOH HOH B . F 3 HOH 3 7 7 HOH HOH B . F 3 HOH 4 8 8 HOH HOH B . F 3 HOH 5 63 63 HOH HOH B . F 3 HOH 6 64 13 HOH HOH B . F 3 HOH 7 65 14 HOH HOH B . F 3 HOH 8 66 66 HOH HOH B . F 3 HOH 9 67 67 HOH HOH B . F 3 HOH 10 68 68 HOH HOH B . F 3 HOH 11 69 19 HOH HOH B . F 3 HOH 12 70 70 HOH HOH B . F 3 HOH 13 71 71 HOH HOH B . F 3 HOH 14 72 72 HOH HOH B . F 3 HOH 15 73 73 HOH HOH B . F 3 HOH 16 74 20 HOH HOH B . F 3 HOH 17 75 22 HOH HOH B . F 3 HOH 18 76 24 HOH HOH B . F 3 HOH 19 77 27 HOH HOH B . F 3 HOH 20 78 28 HOH HOH B . F 3 HOH 21 79 30 HOH HOH B . F 3 HOH 22 80 80 HOH HOH B . F 3 HOH 23 81 81 HOH HOH B . F 3 HOH 24 82 31 HOH HOH B . F 3 HOH 25 83 83 HOH HOH B . F 3 HOH 26 84 84 HOH HOH B . F 3 HOH 27 85 32 HOH HOH B . F 3 HOH 28 86 86 HOH HOH B . F 3 HOH 29 87 34 HOH HOH B . F 3 HOH 30 88 39 HOH HOH B . F 3 HOH 31 89 89 HOH HOH B . F 3 HOH 32 90 90 HOH HOH B . F 3 HOH 33 91 91 HOH HOH B . F 3 HOH 34 92 92 HOH HOH B . F 3 HOH 35 93 40 HOH HOH B . F 3 HOH 36 94 94 HOH HOH B . F 3 HOH 37 95 43 HOH HOH B . F 3 HOH 38 96 47 HOH HOH B . F 3 HOH 39 97 49 HOH HOH B . F 3 HOH 40 98 50 HOH HOH B . F 3 HOH 41 99 51 HOH HOH B . F 3 HOH 42 100 53 HOH HOH B . F 3 HOH 43 101 101 HOH HOH B . F 3 HOH 44 102 102 HOH HOH B . F 3 HOH 45 103 54 HOH HOH B . F 3 HOH 46 104 58 HOH HOH B . F 3 HOH 47 105 105 HOH HOH B . F 3 HOH 48 106 106 HOH HOH B . F 3 HOH 49 107 62 HOH HOH B . F 3 HOH 50 111 111 HOH HOH B . F 3 HOH 51 113 113 HOH HOH B . F 3 HOH 52 114 114 HOH HOH B . F 3 HOH 53 117 117 HOH HOH B . F 3 HOH 54 118 118 HOH HOH B . F 3 HOH 55 120 120 HOH HOH B . F 3 HOH 56 121 121 HOH HOH B . F 3 HOH 57 122 122 HOH HOH B . F 3 HOH 58 124 124 HOH HOH B . F 3 HOH 59 129 129 HOH HOH B . F 3 HOH 60 130 130 HOH HOH B . F 3 HOH 61 134 134 HOH HOH B . F 3 HOH 62 135 135 HOH HOH B . F 3 HOH 63 137 137 HOH HOH B . F 3 HOH 64 139 139 HOH HOH B . F 3 HOH 65 141 141 HOH HOH B . F 3 HOH 66 142 142 HOH HOH B . F 3 HOH 67 143 143 HOH HOH B . F 3 HOH 68 146 146 HOH HOH B . F 3 HOH 69 159 159 HOH HOH B . F 3 HOH 70 168 168 HOH HOH B . F 3 HOH 71 169 169 HOH HOH B . F 3 HOH 72 174 174 HOH HOH B . F 3 HOH 73 192 192 HOH HOH B . F 3 HOH 74 274 274 HOH HOH B . F 3 HOH 75 277 277 HOH HOH B . F 3 HOH 76 284 284 HOH HOH B . G 3 HOH 1 35 35 HOH HOH C . G 3 HOH 2 60 60 HOH HOH C . G 3 HOH 3 93 93 HOH HOH C . G 3 HOH 4 103 103 HOH HOH C . G 3 HOH 5 108 108 HOH HOH C . G 3 HOH 6 119 119 HOH HOH C . G 3 HOH 7 160 160 HOH HOH C . H 3 HOH 1 10 10 HOH HOH D . H 3 HOH 2 16 16 HOH HOH D . H 3 HOH 3 64 64 HOH HOH D . H 3 HOH 4 77 77 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C M3L 9 C M3L 27 ? LYS N-TRIMETHYLLYSINE 2 D M3L 9 D M3L 27 ? LYS N-TRIMETHYLLYSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA tetrameric 4 4 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C,E,G 2 1 A,C,E,G 3 1,2 B,D,F,H 4 1 B,D,F,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4320 ? 1 MORE -22 ? 1 'SSA (A^2)' 7340 ? 2 'ABSA (A^2)' 1460 ? 2 MORE -5 ? 2 'SSA (A^2)' 4370 ? 3 'ABSA (A^2)' 4410 ? 3 MORE -22 ? 3 'SSA (A^2)' 7320 ? 4 'ABSA (A^2)' 1460 ? 4 MORE -5 ? 4 'SSA (A^2)' 4400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 32.7495000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.5.0072 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 63 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 93 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 60 ? CG ? A LYS 52 CG 2 1 Y 1 A LYS 60 ? CD ? A LYS 52 CD 3 1 Y 1 A LYS 60 ? CE ? A LYS 52 CE 4 1 Y 1 A LYS 60 ? NZ ? A LYS 52 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 61 ? A LYS 53 2 1 Y 1 A GLU 62 ? A GLU 54 3 1 Y 1 B LYS 61 ? B LYS 53 4 1 Y 1 B GLU 62 ? B GLU 54 5 1 Y 1 C GLN 19 ? C GLN 1 6 1 Y 1 C ALA 29 ? C ALA 11 7 1 Y 1 C PRO 30 ? C PRO 12 8 1 Y 1 C ALA 31 ? C ALA 13 9 1 Y 1 C THR 32 ? C THR 14 10 1 Y 1 C GLY 33 ? C GLY 15 11 1 Y 1 D GLN 19 ? D GLN 1 12 1 Y 1 D ALA 29 ? D ALA 11 13 1 Y 1 D PRO 30 ? D PRO 12 14 1 Y 1 D ALA 31 ? D ALA 13 15 1 Y 1 D THR 32 ? D THR 14 16 1 Y 1 D GLY 33 ? D GLY 15 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #