HEADER ISOMERASE 30-APR-09 3HA1 TITLE ALANINE RACEMASE FROM BACILLUS ANTHRACIS (AMES) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 1392; SOURCE 5 STRAIN: AMES; SOURCE 6 GENE: DAL-1, DAL1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-TEV-DAL KEYWDS ALANINE RACEMASE, ISOMERASE, PLP, PYRIDOXAL PHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR R.M.COUNAGO,M.DAVLIEVA,U.STRYCH,R.E.HILL,K.L.KRAUSE REVDAT 3 22-NOV-23 3HA1 1 REMARK REVDAT 2 06-SEP-23 3HA1 1 REMARK SEQADV LINK REVDAT 1 15-SEP-09 3HA1 0 JRNL AUTH R.M.COUNAGO,M.DAVLIEVA,U.STRYCH,R.E.HILL,K.L.KRAUSE JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF ALANINE JRNL TITL 2 RACEMASE FROM BACILLUS ANTHRACIS (AMES). JRNL REF BMC STRUCT.BIOL. V. 9 53 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19695097 JRNL DOI 10.1186/1472-6807-9-53 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 53387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1627 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6066 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : -1.51000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.304 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6222 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8487 ; 1.459 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 770 ; 7.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;33.734 ;23.382 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 966 ;13.200 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;14.626 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 966 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4750 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3844 ; 1.273 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6211 ; 1.912 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2378 ; 3.226 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2276 ; 4.742 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 389 REMARK 3 RESIDUE RANGE : B 4 B 389 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9820 -0.9620 12.3810 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.1302 REMARK 3 T33: 0.0834 T12: -0.0019 REMARK 3 T13: 0.0307 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.5425 L22: 2.9722 REMARK 3 L33: 0.8029 L12: 0.4525 REMARK 3 L13: -0.2239 L23: -0.9074 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: 0.0698 S13: 0.0878 REMARK 3 S21: -0.1212 S22: 0.2327 S23: 0.4015 REMARK 3 S31: -0.0113 S32: -0.1290 S33: -0.1961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ATOM RECORD SHOWS TOTAL B FACTORS. REMARK 4 REMARK 4 3HA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 32.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : 0.02900 REMARK 200 FOR THE DATA SET : 14.5260 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.15600 REMARK 200 R SYM FOR SHELL (I) : 0.15600 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1SFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 %PEG 8000, 0.2 M SODIUM ACETATE, REMARK 280 0.1 M SODIUM CACODYLATE, 0.01 M GSH (L-GLUTATHIONE REDUCED), REMARK 280 0.01 M GSSG (L-GLUTATHIONE OXIDIZED), PH 6.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 70.63550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 390 REMARK 465 GLU A 391 REMARK 465 GLU A 392 REMARK 465 ASN A 393 REMARK 465 LEU A 394 REMARK 465 TYR A 395 REMARK 465 PHE A 396 REMARK 465 GLN A 397 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 390 REMARK 465 GLU B 391 REMARK 465 GLU B 392 REMARK 465 ASN B 393 REMARK 465 LEU B 394 REMARK 465 TYR B 395 REMARK 465 PHE B 396 REMARK 465 GLN B 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 SER A 153 OG REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 GLN A 216 CG CD OE1 NE2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 ILE B 95 CG1 CG2 CD1 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 SER B 123 OG REMARK 470 SER B 124 OG REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 SER B 153 OG REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 LEU B 188 CG CD1 CD2 REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 ASP B 200 CG OD1 OD2 REMARK 470 GLN B 216 CG CD OE1 NE2 REMARK 470 LYS B 378 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LLP A 41 161.47 -45.31 REMARK 500 ASP A 48 116.79 98.29 REMARK 500 PHE A 108 11.84 -152.41 REMARK 500 ARG A 138 -82.74 -100.22 REMARK 500 LYS A 202 -55.27 74.28 REMARK 500 PHE A 220 -130.99 53.90 REMARK 500 SER A 269 -174.73 69.94 REMARK 500 THR A 356 -156.21 -140.17 REMARK 500 ASP B 48 123.02 95.29 REMARK 500 PHE B 108 15.19 -150.79 REMARK 500 ARG B 138 -74.75 -104.21 REMARK 500 LYS B 202 -55.83 82.02 REMARK 500 PHE B 220 -132.28 53.54 REMARK 500 SER B 269 -174.32 73.49 REMARK 500 THR B 356 -156.49 -137.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 399 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SFT RELATED DB: PDB REMARK 900 ALANINE RACEMASE FROM G.STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2VD8 RELATED DB: PDB REMARK 900 ALANINE RACEMASE FROM B.ANTHRACIS (BA0252) REMARK 900 RELATED ID: 1RCQ RELATED DB: PDB REMARK 900 ALANINE RACEMASE FROM P.AERUGINOSA REMARK 900 RELATED ID: 1XFC RELATED DB: PDB REMARK 900 ALANINE RACEMASE FROM M.TUBERCULOSIS DBREF 3HA1 A 1 389 UNP Q81VF6 Q81VF6_BACAN 1 389 DBREF 3HA1 B 1 389 UNP Q81VF6 Q81VF6_BACAN 1 389 SEQADV 3HA1 LEU A 390 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 GLU A 391 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 GLU A 392 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 ASN A 393 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 LEU A 394 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 TYR A 395 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 PHE A 396 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 GLN A 397 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 LEU B 390 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 GLU B 391 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 GLU B 392 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 ASN B 393 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 LEU B 394 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 TYR B 395 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 PHE B 396 UNP Q81VF6 EXPRESSION TAG SEQADV 3HA1 GLN B 397 UNP Q81VF6 EXPRESSION TAG SEQRES 1 A 397 MET GLU GLU ALA PRO PHE TYR ARG ASP THR TRP VAL GLU SEQRES 2 A 397 VAL ASP LEU ASP ALA ILE TYR ASN ASN VAL THR HIS ILE SEQRES 3 A 397 LYS GLU PHE ILE PRO SER ASP VAL GLU ILE PHE ALA VAL SEQRES 4 A 397 VAL LLP GLY ASN ALA TYR GLY HIS ASP TYR VAL PRO VAL SEQRES 5 A 397 ALA LYS ILE ALA LEU GLU ALA GLY ALA THR ARG LEU ALA SEQRES 6 A 397 VAL ALA PHE LEU ASP GLU ALA LEU VAL LEU ARG ARG ALA SEQRES 7 A 397 GLY ILE THR ALA PRO ILE LEU VAL LEU GLY PRO SER PRO SEQRES 8 A 397 PRO ARG ASP ILE ASN VAL ALA ALA GLU ASN ASP VAL ALA SEQRES 9 A 397 LEU THR VAL PHE GLN LYS GLU TRP VAL ASP GLU ALA ILE SEQRES 10 A 397 LYS LEU TRP ASP GLY SER SER THR MET LYS TYR HIS ILE SEQRES 11 A 397 ASN PHE ASP SER GLY MET GLY ARG ILE GLY ILE ARG GLU SEQRES 12 A 397 ARG LYS GLU LEU LYS GLY PHE LEU LYS SER LEU GLU GLY SEQRES 13 A 397 ALA PRO PHE LEU GLU LEU GLU GLY VAL TYR THR HIS PHE SEQRES 14 A 397 ALA THR ALA ASP GLU VAL GLU THR SER TYR PHE ASP LYS SEQRES 15 A 397 GLN TYR ASN THR PHE LEU GLU GLN LEU SER TRP LEU LYS SEQRES 16 A 397 GLU PHE GLY VAL ASP PRO LYS PHE VAL HIS THR ALA ASN SEQRES 17 A 397 SER ALA ALA THR LEU ARG PHE GLN GLY ILE THR PHE ASN SEQRES 18 A 397 ALA VAL ARG ILE GLY ILE ALA MET TYR GLY LEU SER PRO SEQRES 19 A 397 SER VAL GLU ILE ARG PRO PHE LEU PRO PHE LYS LEU GLU SEQRES 20 A 397 PRO ALA LEU SER LEU HIS THR LYS VAL ALA HIS ILE LYS SEQRES 21 A 397 GLN VAL ILE LYS GLY ASP GLY ILE SER TYR ASN VAL THR SEQRES 22 A 397 TYR ARG THR LYS THR GLU GLU TRP ILE ALA THR VAL ALA SEQRES 23 A 397 ILE GLY TYR ALA ASP GLY TRP LEU ARG ARG LEU GLN GLY SEQRES 24 A 397 PHE GLU VAL LEU VAL ASN GLY LYS ARG VAL PRO ILE VAL SEQRES 25 A 397 GLY ARG VAL THR MET ASP GLN PHE MET ILE HIS LEU PRO SEQRES 26 A 397 CYS GLU VAL PRO LEU GLY THR LYS VAL THR LEU ILE GLY SEQRES 27 A 397 ARG GLN GLY ASP GLU TYR ILE SER ALA THR GLU VAL ALA SEQRES 28 A 397 GLU TYR SER GLY THR ILE ASN TYR GLU ILE ILE THR THR SEQRES 29 A 397 ILE SER PHE ARG VAL PRO ARG ILE PHE ILE ARG ASN GLY SEQRES 30 A 397 LYS VAL VAL GLU VAL ILE ASN TYR LEU ASN ASP ILE LEU SEQRES 31 A 397 GLU GLU ASN LEU TYR PHE GLN SEQRES 1 B 397 MET GLU GLU ALA PRO PHE TYR ARG ASP THR TRP VAL GLU SEQRES 2 B 397 VAL ASP LEU ASP ALA ILE TYR ASN ASN VAL THR HIS ILE SEQRES 3 B 397 LYS GLU PHE ILE PRO SER ASP VAL GLU ILE PHE ALA VAL SEQRES 4 B 397 VAL LLP GLY ASN ALA TYR GLY HIS ASP TYR VAL PRO VAL SEQRES 5 B 397 ALA LYS ILE ALA LEU GLU ALA GLY ALA THR ARG LEU ALA SEQRES 6 B 397 VAL ALA PHE LEU ASP GLU ALA LEU VAL LEU ARG ARG ALA SEQRES 7 B 397 GLY ILE THR ALA PRO ILE LEU VAL LEU GLY PRO SER PRO SEQRES 8 B 397 PRO ARG ASP ILE ASN VAL ALA ALA GLU ASN ASP VAL ALA SEQRES 9 B 397 LEU THR VAL PHE GLN LYS GLU TRP VAL ASP GLU ALA ILE SEQRES 10 B 397 LYS LEU TRP ASP GLY SER SER THR MET LYS TYR HIS ILE SEQRES 11 B 397 ASN PHE ASP SER GLY MET GLY ARG ILE GLY ILE ARG GLU SEQRES 12 B 397 ARG LYS GLU LEU LYS GLY PHE LEU LYS SER LEU GLU GLY SEQRES 13 B 397 ALA PRO PHE LEU GLU LEU GLU GLY VAL TYR THR HIS PHE SEQRES 14 B 397 ALA THR ALA ASP GLU VAL GLU THR SER TYR PHE ASP LYS SEQRES 15 B 397 GLN TYR ASN THR PHE LEU GLU GLN LEU SER TRP LEU LYS SEQRES 16 B 397 GLU PHE GLY VAL ASP PRO LYS PHE VAL HIS THR ALA ASN SEQRES 17 B 397 SER ALA ALA THR LEU ARG PHE GLN GLY ILE THR PHE ASN SEQRES 18 B 397 ALA VAL ARG ILE GLY ILE ALA MET TYR GLY LEU SER PRO SEQRES 19 B 397 SER VAL GLU ILE ARG PRO PHE LEU PRO PHE LYS LEU GLU SEQRES 20 B 397 PRO ALA LEU SER LEU HIS THR LYS VAL ALA HIS ILE LYS SEQRES 21 B 397 GLN VAL ILE LYS GLY ASP GLY ILE SER TYR ASN VAL THR SEQRES 22 B 397 TYR ARG THR LYS THR GLU GLU TRP ILE ALA THR VAL ALA SEQRES 23 B 397 ILE GLY TYR ALA ASP GLY TRP LEU ARG ARG LEU GLN GLY SEQRES 24 B 397 PHE GLU VAL LEU VAL ASN GLY LYS ARG VAL PRO ILE VAL SEQRES 25 B 397 GLY ARG VAL THR MET ASP GLN PHE MET ILE HIS LEU PRO SEQRES 26 B 397 CYS GLU VAL PRO LEU GLY THR LYS VAL THR LEU ILE GLY SEQRES 27 B 397 ARG GLN GLY ASP GLU TYR ILE SER ALA THR GLU VAL ALA SEQRES 28 B 397 GLU TYR SER GLY THR ILE ASN TYR GLU ILE ILE THR THR SEQRES 29 B 397 ILE SER PHE ARG VAL PRO ARG ILE PHE ILE ARG ASN GLY SEQRES 30 B 397 LYS VAL VAL GLU VAL ILE ASN TYR LEU ASN ASP ILE LEU SEQRES 31 B 397 GLU GLU ASN LEU TYR PHE GLN MODRES 3HA1 LLP A 41 LYS MODRES 3HA1 LLP B 41 LYS HET LLP A 41 24 HET LLP B 41 24 HET ACT A 398 4 HET CL A 399 1 HET ACT B 398 4 HET CL B 399 1 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *358(H2 O) HELIX 1 1 LEU A 16 ILE A 30 1 15 HELIX 2 2 VAL A 40 GLY A 46 1 7 HELIX 3 3 ASP A 48 ALA A 59 1 12 HELIX 4 4 PHE A 68 ALA A 78 1 11 HELIX 5 5 PRO A 91 ARG A 93 5 3 HELIX 6 6 ASP A 94 ASN A 101 1 8 HELIX 7 7 GLN A 109 TRP A 120 1 12 HELIX 8 8 GLU A 143 GLU A 155 1 13 HELIX 9 9 THR A 177 PHE A 197 1 21 HELIX 10 10 ASN A 208 PHE A 215 1 8 HELIX 11 11 ILE A 238 LEU A 242 5 5 HELIX 12 12 SER A 269 THR A 273 5 5 HELIX 13 13 GLY A 288 GLY A 292 5 5 HELIX 14 14 LEU A 294 GLN A 298 5 5 HELIX 15 15 SER A 346 SER A 354 1 9 HELIX 16 16 ILE A 357 THR A 364 1 8 HELIX 17 17 ASN A 384 ILE A 389 5 6 HELIX 18 18 LEU B 16 ILE B 30 1 15 HELIX 19 19 VAL B 40 GLY B 46 1 7 HELIX 20 20 ASP B 48 ALA B 59 1 12 HELIX 21 21 PHE B 68 ALA B 78 1 11 HELIX 22 22 PRO B 91 ARG B 93 5 3 HELIX 23 23 ASP B 94 ASN B 101 1 8 HELIX 24 24 GLN B 109 TRP B 120 1 12 HELIX 25 25 GLU B 143 GLU B 155 1 13 HELIX 26 26 THR B 177 PHE B 197 1 21 HELIX 27 27 ASN B 208 PHE B 215 1 8 HELIX 28 28 GLY B 226 GLY B 231 5 6 HELIX 29 29 ILE B 238 LEU B 242 5 5 HELIX 30 30 SER B 269 THR B 273 5 5 HELIX 31 31 GLY B 288 GLY B 292 5 5 HELIX 32 32 LEU B 294 GLN B 298 5 5 HELIX 33 33 SER B 346 GLY B 355 1 10 HELIX 34 34 ILE B 357 THR B 364 1 8 HELIX 35 35 ASN B 384 ILE B 389 5 6 SHEET 1 A 6 GLU A 343 ILE A 345 0 SHEET 2 A 6 LYS A 333 GLN A 340 -1 N GLY A 338 O ILE A 345 SHEET 3 A 6 LEU A 250 VAL A 262 -1 N THR A 254 O VAL A 334 SHEET 4 A 6 THR A 10 ASP A 15 -1 N GLU A 13 O SER A 251 SHEET 5 A 6 ARG A 371 ARG A 375 1 O ILE A 372 N VAL A 14 SHEET 6 A 6 LYS A 378 ILE A 383 -1 O GLU A 381 N PHE A 373 SHEET 1 B10 GLU A 343 ILE A 345 0 SHEET 2 B10 LYS A 333 GLN A 340 -1 N GLY A 338 O ILE A 345 SHEET 3 B10 GLU A 301 VAL A 304 -1 N LEU A 303 O THR A 335 SHEET 4 B10 LYS A 307 VAL A 312 -1 O VAL A 309 N VAL A 302 SHEET 5 B10 PHE A 320 LEU A 324 -1 O MET A 321 N VAL A 312 SHEET 6 B10 GLU A 280 VAL A 285 -1 N ALA A 283 O ILE A 322 SHEET 7 B10 LEU A 250 VAL A 262 -1 N VAL A 262 O GLU A 280 SHEET 8 B10 THR A 10 ASP A 15 -1 N GLU A 13 O SER A 251 SHEET 9 B10 ARG A 371 ARG A 375 1 O ILE A 372 N VAL A 14 SHEET 10 B10 LYS A 378 ILE A 383 -1 O GLU A 381 N PHE A 373 SHEET 1 C 9 GLU A 35 VAL A 39 0 SHEET 2 C 9 ARG A 63 VAL A 66 1 O ARG A 63 N ALA A 38 SHEET 3 C 9 ILE A 84 VAL A 86 1 O LEU A 85 N LEU A 64 SHEET 4 C 9 VAL A 103 THR A 106 1 O ALA A 104 N VAL A 86 SHEET 5 C 9 MET A 126 ASN A 131 1 O HIS A 129 N LEU A 105 SHEET 6 C 9 LEU A 160 TYR A 166 1 O TYR A 166 N ILE A 130 SHEET 7 C 9 VAL A 204 ALA A 207 1 O HIS A 205 N VAL A 165 SHEET 8 C 9 ALA A 222 ILE A 225 1 O ARG A 224 N ALA A 207 SHEET 9 C 9 GLU A 35 VAL A 39 1 N VAL A 39 O ILE A 225 SHEET 1 D 2 GLY A 267 ILE A 268 0 SHEET 2 D 2 TYR A 274 ARG A 275 -1 O TYR A 274 N ILE A 268 SHEET 1 E 6 GLU B 343 ILE B 345 0 SHEET 2 E 6 LYS B 333 GLN B 340 -1 N GLN B 340 O GLU B 343 SHEET 3 E 6 LEU B 250 VAL B 262 -1 N LEU B 252 O LEU B 336 SHEET 4 E 6 TRP B 11 ASP B 15 -1 N GLU B 13 O SER B 251 SHEET 5 E 6 ARG B 371 ARG B 375 1 O ILE B 372 N VAL B 12 SHEET 6 E 6 LYS B 378 ILE B 383 -1 O GLU B 381 N PHE B 373 SHEET 1 F10 GLU B 343 ILE B 345 0 SHEET 2 F10 LYS B 333 GLN B 340 -1 N GLN B 340 O GLU B 343 SHEET 3 F10 GLU B 301 VAL B 304 -1 N LEU B 303 O THR B 335 SHEET 4 F10 LYS B 307 VAL B 312 -1 O LYS B 307 N VAL B 304 SHEET 5 F10 PHE B 320 LEU B 324 -1 O MET B 321 N VAL B 312 SHEET 6 F10 GLU B 280 VAL B 285 -1 N TRP B 281 O LEU B 324 SHEET 7 F10 LEU B 250 VAL B 262 -1 N LYS B 260 O ILE B 282 SHEET 8 F10 TRP B 11 ASP B 15 -1 N GLU B 13 O SER B 251 SHEET 9 F10 ARG B 371 ARG B 375 1 O ILE B 372 N VAL B 12 SHEET 10 F10 LYS B 378 ILE B 383 -1 O GLU B 381 N PHE B 373 SHEET 1 G 9 GLU B 35 VAL B 39 0 SHEET 2 G 9 ARG B 63 VAL B 66 1 O ARG B 63 N ALA B 38 SHEET 3 G 9 ILE B 84 VAL B 86 1 O LEU B 85 N LEU B 64 SHEET 4 G 9 VAL B 103 THR B 106 1 O ALA B 104 N VAL B 86 SHEET 5 G 9 MET B 126 ASN B 131 1 O HIS B 129 N LEU B 105 SHEET 6 G 9 LEU B 160 TYR B 166 1 O GLU B 163 N TYR B 128 SHEET 7 G 9 VAL B 204 ALA B 207 1 O HIS B 205 N VAL B 165 SHEET 8 G 9 ALA B 222 ILE B 225 1 O ARG B 224 N ALA B 207 SHEET 9 G 9 GLU B 35 VAL B 39 1 N PHE B 37 O VAL B 223 SHEET 1 H 2 GLY B 267 ILE B 268 0 SHEET 2 H 2 TYR B 274 ARG B 275 -1 O TYR B 274 N ILE B 268 LINK C VAL A 40 N LLP A 41 1555 1555 1.33 LINK C LLP A 41 N GLY A 42 1555 1555 1.34 LINK C VAL B 40 N LLP B 41 1555 1555 1.33 LINK C LLP B 41 N GLY B 42 1555 1555 1.33 SITE 1 AC1 7 TYR A 270 TYR A 289 THR A 316 MET A 317 SITE 2 AC1 7 HOH A 404 HOH A 496 LLP B 41 SITE 1 AC2 2 ASN A 131 ARG A 138 SITE 1 AC3 9 LLP A 41 TYR A 359 TYR B 270 TYR B 289 SITE 2 AC3 9 THR B 316 MET B 317 HOH B 465 HOH B 535 SITE 3 AC3 9 HOH B 570 SITE 1 AC4 2 ASN B 131 ARG B 138 CRYST1 49.624 141.271 60.124 90.00 103.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020152 0.000000 0.004692 0.00000 SCALE2 0.000000 0.007079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017077 0.00000