data_3HAF # _entry.id 3HAF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3HAF RCSB RCSB052893 WWPDB D_1000052893 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3HAK _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3HAF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-05-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, S.' 1 'Antony, L.' 2 'Hartmann, R.' 3 'Knaus, K.J.' 4 'Surewicz, K.' 5 'Surewicz, W.K.' 6 'Yee, V.C.' 7 # _citation.id primary _citation.title 'Conformational diversity in prion protein variants influences intermolecular beta-sheet formation.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 29 _citation.page_first 251 _citation.page_last 262 _citation.year 2010 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19927125 _citation.pdbx_database_id_DOI 10.1038/emboj.2009.333 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lee, S.' 1 primary 'Antony, L.' 2 primary 'Hartmann, R.' 3 primary 'Knaus, K.J.' 4 primary 'Surewicz, K.' 5 primary 'Surewicz, W.K.' 6 primary 'Yee, V.C.' 7 # _cell.entry_id 3HAF _cell.length_a 85.287 _cell.length_b 86.358 _cell.length_c 40.736 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HAF _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Major prion protein' 16136.933 1 ? ? 'UNP residues 90-231' ? 2 non-polymer syn 'CADMIUM ION' 112.411 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 52 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PrP, PrP27-30, PrP33-35C, ASCR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYVLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS ; _entity_poly.pdbx_seq_one_letter_code_can ;GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYVLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLY n 1 4 GLY n 1 5 GLY n 1 6 THR n 1 7 HIS n 1 8 SER n 1 9 GLN n 1 10 TRP n 1 11 ASN n 1 12 LYS n 1 13 PRO n 1 14 SER n 1 15 LYS n 1 16 PRO n 1 17 LYS n 1 18 THR n 1 19 ASN n 1 20 MET n 1 21 LYS n 1 22 HIS n 1 23 MET n 1 24 ALA n 1 25 GLY n 1 26 ALA n 1 27 ALA n 1 28 ALA n 1 29 ALA n 1 30 GLY n 1 31 ALA n 1 32 VAL n 1 33 VAL n 1 34 GLY n 1 35 GLY n 1 36 LEU n 1 37 GLY n 1 38 GLY n 1 39 TYR n 1 40 VAL n 1 41 LEU n 1 42 GLY n 1 43 SER n 1 44 ALA n 1 45 MET n 1 46 SER n 1 47 ARG n 1 48 PRO n 1 49 ILE n 1 50 ILE n 1 51 HIS n 1 52 PHE n 1 53 GLY n 1 54 SER n 1 55 ASP n 1 56 TYR n 1 57 GLU n 1 58 ASP n 1 59 ARG n 1 60 TYR n 1 61 TYR n 1 62 ARG n 1 63 GLU n 1 64 ASN n 1 65 MET n 1 66 HIS n 1 67 ARG n 1 68 TYR n 1 69 PRO n 1 70 ASN n 1 71 GLN n 1 72 VAL n 1 73 TYR n 1 74 TYR n 1 75 ARG n 1 76 PRO n 1 77 MET n 1 78 ASP n 1 79 GLU n 1 80 TYR n 1 81 SER n 1 82 ASN n 1 83 GLN n 1 84 ASN n 1 85 ASN n 1 86 PHE n 1 87 VAL n 1 88 HIS n 1 89 ASP n 1 90 CYS n 1 91 VAL n 1 92 ASN n 1 93 ILE n 1 94 THR n 1 95 ILE n 1 96 LYS n 1 97 GLN n 1 98 HIS n 1 99 THR n 1 100 VAL n 1 101 THR n 1 102 THR n 1 103 THR n 1 104 THR n 1 105 LYS n 1 106 GLY n 1 107 GLU n 1 108 ASN n 1 109 PHE n 1 110 THR n 1 111 GLU n 1 112 THR n 1 113 ASP n 1 114 VAL n 1 115 LYS n 1 116 MET n 1 117 MET n 1 118 GLU n 1 119 ARG n 1 120 VAL n 1 121 VAL n 1 122 GLU n 1 123 GLN n 1 124 MET n 1 125 CYS n 1 126 ILE n 1 127 THR n 1 128 GLN n 1 129 TYR n 1 130 GLU n 1 131 ARG n 1 132 GLU n 1 133 SER n 1 134 GLN n 1 135 ALA n 1 136 TYR n 1 137 TYR n 1 138 GLN n 1 139 ARG n 1 140 GLY n 1 141 SER n 1 142 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PRNP, PRIP, PRP' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIO_HUMAN _struct_ref.pdbx_db_accession P04156 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS ; _struct_ref.pdbx_align_begin 90 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HAF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04156 _struct_ref_seq.db_align_beg 90 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 231 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 90 _struct_ref_seq.pdbx_auth_seq_align_end 231 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3HAF _struct_ref_seq_dif.mon_id VAL _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 40 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P04156 _struct_ref_seq_dif.db_mon_id MET _struct_ref_seq_dif.pdbx_seq_db_seq_num 129 _struct_ref_seq_dif.details VARIANT _struct_ref_seq_dif.pdbx_auth_seq_num 129 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3HAF _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 10.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Tris, 3.4M NaCl, pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2006-04-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9787 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9787 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.entry_id 3HAF _reflns.d_resolution_high 2.150 _reflns.d_resolution_low 30.000 _reflns.number_obs 7351 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_netI_over_sigmaI 3.889 _reflns.pdbx_chi_squared 0.256 _reflns.pdbx_redundancy 5.500 _reflns.percent_possible_obs 83.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.15 2.23 ? ? ? 0.378 ? ? 0.323 2.30 ? 344 40.20 ? 1 2.23 2.32 ? ? ? 0.353 ? ? 0.373 3.00 ? 427 49.30 ? 2 2.32 2.42 ? ? ? 0.394 ? ? 0.377 3.80 ? 560 65.30 ? 3 2.42 2.55 ? ? ? 0.435 ? ? 0.338 4.60 ? 717 81.40 ? 4 2.55 2.71 ? ? ? 0.405 ? ? 0.351 5.40 ? 810 94.20 ? 5 2.71 2.92 ? ? ? 0.242 ? ? 0.390 6.30 ? 871 99.70 ? 6 2.92 3.21 ? ? ? 0.152 ? ? 0.387 6.60 ? 884 99.90 ? 7 3.21 3.67 ? ? ? 0.088 ? ? 0.130 6.50 ? 886 100.00 ? 8 3.67 4.63 ? ? ? 0.057 ? ? 0.095 6.30 ? 899 100.00 ? 9 4.63 30.00 ? ? ? 0.047 ? ? 0.086 5.70 ? 953 99.90 ? 10 # _refine.entry_id 3HAF _refine.ls_d_res_high 2.260 _refine.ls_d_res_low 27.270 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 90.270 _refine.ls_number_reflns_obs 6669 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_R_work 0.203 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.278 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 313 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 47.225 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.010 _refine.aniso_B[2][2] -0.010 _refine.aniso_B[3][3] 0.020 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.918 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.287 _refine.pdbx_overall_ESU_R_Free 0.252 _refine.overall_SU_ML 0.175 _refine.overall_SU_B 7.617 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 92.35 _refine.B_iso_min 21.50 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 878 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 932 _refine_hist.d_res_high 2.260 _refine_hist.d_res_low 27.270 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 900 0.013 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1219 1.428 1.922 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 107 5.163 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 52 35.003 23.846 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 151 16.159 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 15.194 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 126 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 714 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 529 0.952 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 862 1.816 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 371 2.031 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 356 3.347 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.255 _refine_ls_shell.d_res_low 2.314 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 42.280 _refine_ls_shell.number_reflns_R_work 210 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.326 _refine_ls_shell.R_factor_R_free 0.320 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 219 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HAF _struct.title 'Human prion protein variant V129 domain swapped dimer' _struct.pdbx_descriptor 'Major prion protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HAF _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;Prion, Cell membrane, Disease mutation, Disulfide bond, Glycoprotein, Golgi apparatus, GPI-anchor, Lipoprotein, Membrane, Polymorphism, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 54 ? MET A 65 ? SER A 143 MET A 154 1 ? 12 HELX_P HELX_P2 2 HIS A 66 ? TYR A 68 ? HIS A 155 TYR A 157 5 ? 3 HELX_P HELX_P3 3 PRO A 76 ? TYR A 80 ? PRO A 165 TYR A 169 5 ? 5 HELX_P HELX_P4 4 ASN A 82 ? THR A 101 ? ASN A 171 THR A 190 1 ? 20 HELX_P HELX_P5 5 THR A 104 ? PHE A 109 ? THR A 193 PHE A 198 1 ? 6 HELX_P HELX_P6 6 THR A 110 ? ALA A 135 ? THR A 199 ALA A 224 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 125 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 179 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 214 _struct_conn.ptnr2_symmetry 4_556 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.120 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 40 ? LEU A 41 ? VAL A 129 LEU A 130 A 2 TYR A 73 ? TYR A 74 ? TYR A 162 TYR A 163 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 40 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 129 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id TYR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 74 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 163 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CD A 300' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS A 51 ? HIS A 140 . ? 1_555 ? 2 AC1 2 ASP A 58 ? ASP A 147 . ? 1_555 ? 3 AC2 4 SER A 43 ? SER A 132 . ? 1_555 ? 4 AC2 4 LYS A 96 ? LYS A 185 . ? 6_554 ? 5 AC2 4 GLN A 128 ? GLN A 217 . ? 4_556 ? 6 AC2 4 HOH D . ? HOH A 343 . ? 1_555 ? # _atom_sites.entry_id 3HAF _atom_sites.fract_transf_matrix[1][1] 0.011725 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011580 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024548 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 90 ? ? ? A . n A 1 2 GLN 2 91 ? ? ? A . n A 1 3 GLY 3 92 ? ? ? A . n A 1 4 GLY 4 93 ? ? ? A . n A 1 5 GLY 5 94 ? ? ? A . n A 1 6 THR 6 95 ? ? ? A . n A 1 7 HIS 7 96 ? ? ? A . n A 1 8 SER 8 97 ? ? ? A . n A 1 9 GLN 9 98 ? ? ? A . n A 1 10 TRP 10 99 ? ? ? A . n A 1 11 ASN 11 100 ? ? ? A . n A 1 12 LYS 12 101 ? ? ? A . n A 1 13 PRO 13 102 ? ? ? A . n A 1 14 SER 14 103 ? ? ? A . n A 1 15 LYS 15 104 ? ? ? A . n A 1 16 PRO 16 105 ? ? ? A . n A 1 17 LYS 17 106 ? ? ? A . n A 1 18 THR 18 107 ? ? ? A . n A 1 19 ASN 19 108 ? ? ? A . n A 1 20 MET 20 109 ? ? ? A . n A 1 21 LYS 21 110 ? ? ? A . n A 1 22 HIS 22 111 ? ? ? A . n A 1 23 MET 23 112 ? ? ? A . n A 1 24 ALA 24 113 ? ? ? A . n A 1 25 GLY 25 114 ? ? ? A . n A 1 26 ALA 26 115 ? ? ? A . n A 1 27 ALA 27 116 ? ? ? A . n A 1 28 ALA 28 117 ? ? ? A . n A 1 29 ALA 29 118 ? ? ? A . n A 1 30 GLY 30 119 ? ? ? A . n A 1 31 ALA 31 120 120 ALA ALA A . n A 1 32 VAL 32 121 121 VAL VAL A . n A 1 33 VAL 33 122 122 VAL VAL A . n A 1 34 GLY 34 123 123 GLY GLY A . n A 1 35 GLY 35 124 124 GLY GLY A . n A 1 36 LEU 36 125 125 LEU LEU A . n A 1 37 GLY 37 126 126 GLY GLY A . n A 1 38 GLY 38 127 127 GLY GLY A . n A 1 39 TYR 39 128 128 TYR TYR A . n A 1 40 VAL 40 129 129 VAL VAL A . n A 1 41 LEU 41 130 130 LEU LEU A . n A 1 42 GLY 42 131 131 GLY GLY A . n A 1 43 SER 43 132 132 SER SER A . n A 1 44 ALA 44 133 133 ALA ALA A . n A 1 45 MET 45 134 134 MET MET A . n A 1 46 SER 46 135 135 SER SER A . n A 1 47 ARG 47 136 136 ARG ARG A . n A 1 48 PRO 48 137 137 PRO PRO A . n A 1 49 ILE 49 138 138 ILE ILE A . n A 1 50 ILE 50 139 139 ILE ILE A . n A 1 51 HIS 51 140 140 HIS HIS A . n A 1 52 PHE 52 141 141 PHE PHE A . n A 1 53 GLY 53 142 142 GLY GLY A . n A 1 54 SER 54 143 143 SER SER A . n A 1 55 ASP 55 144 144 ASP ASP A . n A 1 56 TYR 56 145 145 TYR TYR A . n A 1 57 GLU 57 146 146 GLU GLU A . n A 1 58 ASP 58 147 147 ASP ASP A . n A 1 59 ARG 59 148 148 ARG ARG A . n A 1 60 TYR 60 149 149 TYR TYR A . n A 1 61 TYR 61 150 150 TYR TYR A . n A 1 62 ARG 62 151 151 ARG ARG A . n A 1 63 GLU 63 152 152 GLU GLU A . n A 1 64 ASN 64 153 153 ASN ASN A . n A 1 65 MET 65 154 154 MET MET A . n A 1 66 HIS 66 155 155 HIS HIS A . n A 1 67 ARG 67 156 156 ARG ARG A . n A 1 68 TYR 68 157 157 TYR TYR A . n A 1 69 PRO 69 158 158 PRO PRO A . n A 1 70 ASN 70 159 159 ASN ASN A . n A 1 71 GLN 71 160 160 GLN GLN A . n A 1 72 VAL 72 161 161 VAL VAL A . n A 1 73 TYR 73 162 162 TYR TYR A . n A 1 74 TYR 74 163 163 TYR TYR A . n A 1 75 ARG 75 164 164 ARG ARG A . n A 1 76 PRO 76 165 165 PRO PRO A . n A 1 77 MET 77 166 166 MET MET A . n A 1 78 ASP 78 167 167 ASP ASP A . n A 1 79 GLU 79 168 168 GLU GLU A . n A 1 80 TYR 80 169 169 TYR TYR A . n A 1 81 SER 81 170 170 SER SER A . n A 1 82 ASN 82 171 171 ASN ASN A . n A 1 83 GLN 83 172 172 GLN GLN A . n A 1 84 ASN 84 173 173 ASN ASN A . n A 1 85 ASN 85 174 174 ASN ASN A . n A 1 86 PHE 86 175 175 PHE PHE A . n A 1 87 VAL 87 176 176 VAL VAL A . n A 1 88 HIS 88 177 177 HIS HIS A . n A 1 89 ASP 89 178 178 ASP ASP A . n A 1 90 CYS 90 179 179 CYS CYS A . n A 1 91 VAL 91 180 180 VAL VAL A . n A 1 92 ASN 92 181 181 ASN ASN A . n A 1 93 ILE 93 182 182 ILE ILE A . n A 1 94 THR 94 183 183 THR THR A . n A 1 95 ILE 95 184 184 ILE ILE A . n A 1 96 LYS 96 185 185 LYS LYS A . n A 1 97 GLN 97 186 186 GLN GLN A . n A 1 98 HIS 98 187 187 HIS HIS A . n A 1 99 THR 99 188 188 THR THR A . n A 1 100 VAL 100 189 189 VAL VAL A . n A 1 101 THR 101 190 190 THR THR A . n A 1 102 THR 102 191 191 THR THR A . n A 1 103 THR 103 192 192 THR THR A . n A 1 104 THR 104 193 193 THR THR A . n A 1 105 LYS 105 194 194 LYS LYS A . n A 1 106 GLY 106 195 195 GLY GLY A . n A 1 107 GLU 107 196 196 GLU GLU A . n A 1 108 ASN 108 197 197 ASN ASN A . n A 1 109 PHE 109 198 198 PHE PHE A . n A 1 110 THR 110 199 199 THR THR A . n A 1 111 GLU 111 200 200 GLU GLU A . n A 1 112 THR 112 201 201 THR THR A . n A 1 113 ASP 113 202 202 ASP ASP A . n A 1 114 VAL 114 203 203 VAL VAL A . n A 1 115 LYS 115 204 204 LYS LYS A . n A 1 116 MET 116 205 205 MET MET A . n A 1 117 MET 117 206 206 MET MET A . n A 1 118 GLU 118 207 207 GLU GLU A . n A 1 119 ARG 119 208 208 ARG ARG A . n A 1 120 VAL 120 209 209 VAL VAL A . n A 1 121 VAL 121 210 210 VAL VAL A . n A 1 122 GLU 122 211 211 GLU GLU A . n A 1 123 GLN 123 212 212 GLN GLN A . n A 1 124 MET 124 213 213 MET MET A . n A 1 125 CYS 125 214 214 CYS CYS A . n A 1 126 ILE 126 215 215 ILE ILE A . n A 1 127 THR 127 216 216 THR THR A . n A 1 128 GLN 128 217 217 GLN GLN A . n A 1 129 TYR 129 218 218 TYR TYR A . n A 1 130 GLU 130 219 219 GLU GLU A . n A 1 131 ARG 131 220 220 ARG ARG A . n A 1 132 GLU 132 221 221 GLU GLU A . n A 1 133 SER 133 222 222 SER SER A . n A 1 134 GLN 134 223 223 GLN GLN A . n A 1 135 ALA 135 224 224 ALA ALA A . n A 1 136 TYR 136 225 225 TYR TYR A . n A 1 137 TYR 137 226 ? ? ? A . n A 1 138 GLN 138 227 ? ? ? A . n A 1 139 ARG 139 228 ? ? ? A . n A 1 140 GLY 140 229 ? ? ? A . n A 1 141 SER 141 230 ? ? ? A . n A 1 142 SER 142 231 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 300 300 CD CD A . C 3 CL 1 301 301 CL CL A . D 4 HOH 1 302 302 HOH HOH A . D 4 HOH 2 303 303 HOH HOH A . D 4 HOH 3 304 304 HOH HOH A . D 4 HOH 4 305 305 HOH HOH A . D 4 HOH 5 306 306 HOH HOH A . D 4 HOH 6 307 307 HOH HOH A . D 4 HOH 7 308 308 HOH HOH A . D 4 HOH 8 309 309 HOH HOH A . D 4 HOH 9 310 310 HOH HOH A . D 4 HOH 10 311 311 HOH HOH A . D 4 HOH 11 312 312 HOH HOH A . D 4 HOH 12 313 313 HOH HOH A . D 4 HOH 13 314 314 HOH HOH A . D 4 HOH 14 315 315 HOH HOH A . D 4 HOH 15 316 316 HOH HOH A . D 4 HOH 16 317 317 HOH HOH A . D 4 HOH 17 318 318 HOH HOH A . D 4 HOH 18 319 319 HOH HOH A . D 4 HOH 19 320 320 HOH HOH A . D 4 HOH 20 321 321 HOH HOH A . D 4 HOH 21 322 322 HOH HOH A . D 4 HOH 22 323 323 HOH HOH A . D 4 HOH 23 324 324 HOH HOH A . D 4 HOH 24 325 325 HOH HOH A . D 4 HOH 25 326 326 HOH HOH A . D 4 HOH 26 327 327 HOH HOH A . D 4 HOH 27 328 328 HOH HOH A . D 4 HOH 28 329 329 HOH HOH A . D 4 HOH 29 330 330 HOH HOH A . D 4 HOH 30 331 331 HOH HOH A . D 4 HOH 31 332 332 HOH HOH A . D 4 HOH 32 333 333 HOH HOH A . D 4 HOH 33 334 334 HOH HOH A . D 4 HOH 34 335 335 HOH HOH A . D 4 HOH 35 336 336 HOH HOH A . D 4 HOH 36 337 337 HOH HOH A . D 4 HOH 37 338 338 HOH HOH A . D 4 HOH 38 339 339 HOH HOH A . D 4 HOH 39 340 340 HOH HOH A . D 4 HOH 40 341 341 HOH HOH A . D 4 HOH 41 342 342 HOH HOH A . D 4 HOH 42 343 343 HOH HOH A . D 4 HOH 43 344 344 HOH HOH A . D 4 HOH 44 345 345 HOH HOH A . D 4 HOH 45 346 346 HOH HOH A . D 4 HOH 46 347 347 HOH HOH A . D 4 HOH 47 348 348 HOH HOH A . D 4 HOH 48 349 349 HOH HOH A . D 4 HOH 49 350 350 HOH HOH A . D 4 HOH 50 351 351 HOH HOH A . D 4 HOH 51 352 352 HOH HOH A . D 4 HOH 52 353 353 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6660 ? 1 MORE -81 ? 1 'SSA (A^2)' 11180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 40.7360000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.5.0066 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 EPMR . ? ? ? ? phasing ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 167 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -56.99 _pdbx_validate_torsion.psi 1.27 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 90 ? A GLY 1 2 1 Y 1 A GLN 91 ? A GLN 2 3 1 Y 1 A GLY 92 ? A GLY 3 4 1 Y 1 A GLY 93 ? A GLY 4 5 1 Y 1 A GLY 94 ? A GLY 5 6 1 Y 1 A THR 95 ? A THR 6 7 1 Y 1 A HIS 96 ? A HIS 7 8 1 Y 1 A SER 97 ? A SER 8 9 1 Y 1 A GLN 98 ? A GLN 9 10 1 Y 1 A TRP 99 ? A TRP 10 11 1 Y 1 A ASN 100 ? A ASN 11 12 1 Y 1 A LYS 101 ? A LYS 12 13 1 Y 1 A PRO 102 ? A PRO 13 14 1 Y 1 A SER 103 ? A SER 14 15 1 Y 1 A LYS 104 ? A LYS 15 16 1 Y 1 A PRO 105 ? A PRO 16 17 1 Y 1 A LYS 106 ? A LYS 17 18 1 Y 1 A THR 107 ? A THR 18 19 1 Y 1 A ASN 108 ? A ASN 19 20 1 Y 1 A MET 109 ? A MET 20 21 1 Y 1 A LYS 110 ? A LYS 21 22 1 Y 1 A HIS 111 ? A HIS 22 23 1 Y 1 A MET 112 ? A MET 23 24 1 Y 1 A ALA 113 ? A ALA 24 25 1 Y 1 A GLY 114 ? A GLY 25 26 1 Y 1 A ALA 115 ? A ALA 26 27 1 Y 1 A ALA 116 ? A ALA 27 28 1 Y 1 A ALA 117 ? A ALA 28 29 1 Y 1 A ALA 118 ? A ALA 29 30 1 Y 1 A GLY 119 ? A GLY 30 31 1 Y 1 A TYR 226 ? A TYR 137 32 1 Y 1 A GLN 227 ? A GLN 138 33 1 Y 1 A ARG 228 ? A ARG 139 34 1 Y 1 A GLY 229 ? A GLY 140 35 1 Y 1 A SER 230 ? A SER 141 36 1 Y 1 A SER 231 ? A SER 142 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 'CHLORIDE ION' CL 4 water HOH #