HEADER ISOMERASE 04-MAY-09 3HBA TITLE CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOSUGAR ISOMERASE (SDEN_2705) TITLE 2 FROM SHEWANELLA DENITRIFICANS OS217 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHOSUGAR ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING); COMPND 5 EC: 2.6.1.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA DENITRIFICANS OS217; SOURCE 3 ORGANISM_TAXID: 318161; SOURCE 4 GENE: SDEN_2705, YP_563707.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3HBA 1 REMARK SEQADV REVDAT 5 24-JUL-19 3HBA 1 REMARK LINK REVDAT 4 01-NOV-17 3HBA 1 REMARK REVDAT 3 13-JUL-11 3HBA 1 VERSN REVDAT 2 23-MAR-11 3HBA 1 HEADER TITLE KEYWDS REVDAT 1 19-MAY-09 3HBA 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOSUGAR ISOMERASE JRNL TITL 2 (YP_563707.1) FROM SHEWANELLA DENITRIFICANS OS-217 AT 2.00 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 49992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2540 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 438 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.145 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4810 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3116 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6564 ; 1.526 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7708 ; 0.981 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 649 ; 4.524 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;35.101 ;24.749 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 799 ;12.701 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;11.595 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 803 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5384 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 889 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3154 ; 1.863 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1270 ; 0.528 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5077 ; 3.053 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1656 ; 5.306 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1473 ; 7.420 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 322 6 REMARK 3 1 B 3 B 322 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 3653 ; 0.390 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 3653 ; 2.620 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 71.3303 85.4087 19.4984 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0145 REMARK 3 T33: 0.0293 T12: 0.0080 REMARK 3 T13: -0.0072 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.0611 L22: 0.8800 REMARK 3 L33: 0.7673 L12: 0.1246 REMARK 3 L13: -0.0264 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.0142 S13: -0.0178 REMARK 3 S21: -0.0323 S22: -0.0172 S23: 0.1456 REMARK 3 S31: 0.0422 S32: -0.0722 S33: 0.0118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 323 REMARK 3 ORIGIN FOR THE GROUP (A): 81.9872 89.9154 46.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.0289 T22: 0.0136 REMARK 3 T33: 0.0267 T12: -0.0032 REMARK 3 T13: -0.0009 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.6340 L22: 0.6139 REMARK 3 L33: 0.9538 L12: -0.0358 REMARK 3 L13: 0.1670 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0852 S13: -0.0375 REMARK 3 S21: 0.0225 S22: 0.0259 S23: 0.1214 REMARK 3 S31: 0.0487 S32: -0.0041 S33: -0.0235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.CITRATE REMARK 3 (CIT) AND GLYCEROL (GOL) FROM THE CRYSTALLIZATION AND REMARK 3 CRYOPROTECTION CONDITIONS RESPECTIVELY HAVE BEEN MODELED IN THE REMARK 3 SOLVENT STRUCTURE. REMARK 4 REMARK 4 3HBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.64 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97961,0.97944 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.136 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5000% POLYETHYLENE GLYCOL 6000, REMARK 280 0.1M CITRIC ACID PH 4.64, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.28950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.74850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.72250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.74850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.28950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.72250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 HIS A 243 REMARK 465 GLY A 244 REMARK 465 PRO A 245 REMARK 465 VAL A 246 REMARK 465 THR A 247 REMARK 465 LEU A 248 REMARK 465 VAL A 249 REMARK 465 GLU A 250 REMARK 465 LYS A 251 REMARK 465 LYS A 252 REMARK 465 LEU A 253 REMARK 465 PRO A 323 REMARK 465 ALA A 324 REMARK 465 GLY A 325 REMARK 465 LEU A 326 REMARK 465 LYS A 327 REMARK 465 LYS A 328 REMARK 465 VAL A 329 REMARK 465 THR A 330 REMARK 465 GLN A 331 REMARK 465 THR A 332 REMARK 465 LEU A 333 REMARK 465 GLY B 0 REMARK 465 HIS B 243 REMARK 465 GLY B 244 REMARK 465 PRO B 245 REMARK 465 VAL B 246 REMARK 465 THR B 247 REMARK 465 LEU B 248 REMARK 465 VAL B 249 REMARK 465 GLU B 250 REMARK 465 LYS B 251 REMARK 465 LYS B 252 REMARK 465 LEU B 253 REMARK 465 ALA B 324 REMARK 465 GLY B 325 REMARK 465 LEU B 326 REMARK 465 LYS B 327 REMARK 465 LYS B 328 REMARK 465 VAL B 329 REMARK 465 THR B 330 REMARK 465 GLN B 331 REMARK 465 THR B 332 REMARK 465 LEU B 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 40 CE NZ REMARK 470 ARG A 49 NE CZ NH1 NH2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLU A 176 CD OE1 OE2 REMARK 470 GLN A 183 CD OE1 NE2 REMARK 470 ASP A 202 CB CG OD1 OD2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 LYS A 276 CE NZ REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 322 CD CE NZ REMARK 470 GLU B 38 OE1 OE2 REMARK 470 GLU B 144 CD OE1 OE2 REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 LYS B 204 CD CE NZ REMARK 470 ARG B 278 CD NE CZ NH1 NH2 REMARK 470 LYS B 322 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 40 70.75 62.42 REMARK 500 ARG A 49 36.41 -99.59 REMARK 500 THR A 151 -77.24 -135.85 REMARK 500 ASP A 202 8.38 81.46 REMARK 500 PHE A 241 32.17 -69.72 REMARK 500 ASP A 262 -159.44 -129.40 REMARK 500 ASP B 53 125.29 -34.73 REMARK 500 ALA B 115 4.00 -63.10 REMARK 500 THR B 151 -79.13 -126.87 REMARK 500 LYS B 322 69.24 -151.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391339 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HBA A 1 333 UNP Q12KP2 Q12KP2_SHEDO 1 333 DBREF 3HBA B 1 333 UNP Q12KP2 Q12KP2_SHEDO 1 333 SEQADV 3HBA GLY A 0 UNP Q12KP2 EXPRESSION TAG SEQADV 3HBA GLY B 0 UNP Q12KP2 EXPRESSION TAG SEQRES 1 A 334 GLY MSE THR THR ASN THR ILE MSE GLU GLN GLU ALA ARG SEQRES 2 A 334 THR ALA PRO GLN LYS ILE ALA GLU GLN LEU LEU ALA ASN SEQRES 3 A 334 ASP ALA ILE THR GLU SER LEU GLY SER VAL LEU ARG GLU SEQRES 4 A 334 PHE LYS PRO LYS PHE VAL MSE ILE VAL GLY ARG GLY SER SEQRES 5 A 334 SER ASP HIS ALA GLY VAL PHE ALA LYS TYR LEU PHE GLU SEQRES 6 A 334 ILE GLU ALA SER ILE PRO THR PHE ALA ALA ALA PRO SER SEQRES 7 A 334 VAL ALA SER VAL TYR GLY LYS THR LEU LYS LEU ALA GLY SEQRES 8 A 334 GLY LEU VAL ILE VAL ILE SER GLN SER GLY ARG SER PRO SEQRES 9 A 334 ASP ILE LEU ALA GLN ALA ARG MSE ALA LYS ASN ALA GLY SEQRES 10 A 334 ALA PHE CYS VAL ALA LEU VAL ASN ASP GLU THR ALA PRO SEQRES 11 A 334 ILE LYS ASP ILE VAL ASP VAL VAL ILE PRO LEU ARG ALA SEQRES 12 A 334 GLY GLU GLU LYS ALA VAL ALA ALA THR LYS SER TYR LEU SEQRES 13 A 334 ALA THR LEU SER ALA LEU LEU GLN VAL ALA ALA LYS TRP SEQRES 14 A 334 THR GLN ASN GLU SER LEU VAL GLU ALA VAL ASN SER LEU SEQRES 15 A 334 PRO GLN ALA LEU GLN ALA ALA VAL ASP ALA GLU PRO GLN SEQRES 16 A 334 LEU ARG ALA GLY SER LEU THR ASP VAL LYS ASN LEU VAL SEQRES 17 A 334 VAL LEU GLY ARG GLY PHE GLY TYR ALA VAL SER LYS GLU SEQRES 18 A 334 ILE ALA LEU LYS LEU LYS GLU VAL CYS ALA ILE HIS ALA SEQRES 19 A 334 GLU ALA PHE SER SER ALA GLU PHE LEU HIS GLY PRO VAL SEQRES 20 A 334 THR LEU VAL GLU LYS LYS LEU SER ILE LEU ASP VAL CYS SEQRES 21 A 334 ILE ARG ASP GLU SER TYR GLY SER HIS VAL GLU GLN ILE SEQRES 22 A 334 ALA ASN VAL LYS GLN ARG GLY ALA ASN LEU ILE HIS LEU SEQRES 23 A 334 HIS GLN THR SER ALA ASP ILE HIS PRO ARG ILE ALA PRO SEQRES 24 A 334 LEU ALA LEU LEU GLN ARG PHE TYR ILE ASP VAL ALA ALA SEQRES 25 A 334 VAL ALA ILE ALA LEU GLY ILE ASN PRO ASP LYS PRO ALA SEQRES 26 A 334 GLY LEU LYS LYS VAL THR GLN THR LEU SEQRES 1 B 334 GLY MSE THR THR ASN THR ILE MSE GLU GLN GLU ALA ARG SEQRES 2 B 334 THR ALA PRO GLN LYS ILE ALA GLU GLN LEU LEU ALA ASN SEQRES 3 B 334 ASP ALA ILE THR GLU SER LEU GLY SER VAL LEU ARG GLU SEQRES 4 B 334 PHE LYS PRO LYS PHE VAL MSE ILE VAL GLY ARG GLY SER SEQRES 5 B 334 SER ASP HIS ALA GLY VAL PHE ALA LYS TYR LEU PHE GLU SEQRES 6 B 334 ILE GLU ALA SER ILE PRO THR PHE ALA ALA ALA PRO SER SEQRES 7 B 334 VAL ALA SER VAL TYR GLY LYS THR LEU LYS LEU ALA GLY SEQRES 8 B 334 GLY LEU VAL ILE VAL ILE SER GLN SER GLY ARG SER PRO SEQRES 9 B 334 ASP ILE LEU ALA GLN ALA ARG MSE ALA LYS ASN ALA GLY SEQRES 10 B 334 ALA PHE CYS VAL ALA LEU VAL ASN ASP GLU THR ALA PRO SEQRES 11 B 334 ILE LYS ASP ILE VAL ASP VAL VAL ILE PRO LEU ARG ALA SEQRES 12 B 334 GLY GLU GLU LYS ALA VAL ALA ALA THR LYS SER TYR LEU SEQRES 13 B 334 ALA THR LEU SER ALA LEU LEU GLN VAL ALA ALA LYS TRP SEQRES 14 B 334 THR GLN ASN GLU SER LEU VAL GLU ALA VAL ASN SER LEU SEQRES 15 B 334 PRO GLN ALA LEU GLN ALA ALA VAL ASP ALA GLU PRO GLN SEQRES 16 B 334 LEU ARG ALA GLY SER LEU THR ASP VAL LYS ASN LEU VAL SEQRES 17 B 334 VAL LEU GLY ARG GLY PHE GLY TYR ALA VAL SER LYS GLU SEQRES 18 B 334 ILE ALA LEU LYS LEU LYS GLU VAL CYS ALA ILE HIS ALA SEQRES 19 B 334 GLU ALA PHE SER SER ALA GLU PHE LEU HIS GLY PRO VAL SEQRES 20 B 334 THR LEU VAL GLU LYS LYS LEU SER ILE LEU ASP VAL CYS SEQRES 21 B 334 ILE ARG ASP GLU SER TYR GLY SER HIS VAL GLU GLN ILE SEQRES 22 B 334 ALA ASN VAL LYS GLN ARG GLY ALA ASN LEU ILE HIS LEU SEQRES 23 B 334 HIS GLN THR SER ALA ASP ILE HIS PRO ARG ILE ALA PRO SEQRES 24 B 334 LEU ALA LEU LEU GLN ARG PHE TYR ILE ASP VAL ALA ALA SEQRES 25 B 334 VAL ALA ILE ALA LEU GLY ILE ASN PRO ASP LYS PRO ALA SEQRES 26 B 334 GLY LEU LYS LYS VAL THR GLN THR LEU MODRES 3HBA MSE A 1 MET SELENOMETHIONINE MODRES 3HBA MSE A 7 MET SELENOMETHIONINE MODRES 3HBA MSE A 45 MET SELENOMETHIONINE MODRES 3HBA MSE A 111 MET SELENOMETHIONINE MODRES 3HBA MSE B 1 MET SELENOMETHIONINE MODRES 3HBA MSE B 7 MET SELENOMETHIONINE MODRES 3HBA MSE B 45 MET SELENOMETHIONINE MODRES 3HBA MSE B 111 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 7 8 HET MSE A 45 8 HET MSE A 111 8 HET MSE B 1 8 HET MSE B 7 8 HET MSE B 45 8 HET MSE B 111 16 HET CIT A 334 13 HET GOL A 335 6 HET CIT B 334 13 HETNAM MSE SELENOMETHIONINE HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CIT 2(C6 H8 O7) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *438(H2 O) HELIX 1 1 THR A 5 LYS A 40 1 36 HELIX 2 2 ARG A 49 SER A 52 5 4 HELIX 3 3 ASP A 53 SER A 68 1 16 HELIX 4 4 ALA A 75 VAL A 81 1 7 HELIX 5 5 SER A 102 ALA A 115 1 14 HELIX 6 6 ALA A 128 ILE A 133 5 6 HELIX 7 7 THR A 151 GLN A 170 1 20 HELIX 8 8 ASN A 171 ALA A 191 1 21 HELIX 9 9 ARG A 196 LEU A 200 5 5 HELIX 10 10 GLY A 212 ALA A 230 1 19 HELIX 11 11 SER A 264 ARG A 278 1 15 HELIX 12 12 ILE A 296 LEU A 316 1 21 HELIX 13 13 THR B 5 LYS B 40 1 36 HELIX 14 14 ASP B 53 SER B 68 1 16 HELIX 15 15 ALA B 75 VAL B 81 1 7 HELIX 16 16 SER B 102 ALA B 115 1 14 HELIX 17 17 ALA B 128 ILE B 133 5 6 HELIX 18 18 THR B 151 GLN B 170 1 20 HELIX 19 19 ASN B 171 SER B 180 1 10 HELIX 20 20 SER B 180 ALA B 191 1 12 HELIX 21 21 GLY B 212 ALA B 230 1 19 HELIX 22 22 SER B 264 ARG B 278 1 15 HELIX 23 23 ILE B 296 LEU B 316 1 21 SHEET 1 A 5 THR A 71 ALA A 73 0 SHEET 2 A 5 VAL A 44 VAL A 47 1 N ILE A 46 O PHE A 72 SHEET 3 A 5 LEU A 92 SER A 97 1 O ILE A 96 N VAL A 47 SHEET 4 A 5 PHE A 118 VAL A 123 1 O LEU A 122 N VAL A 95 SHEET 5 A 5 VAL A 136 PRO A 139 1 O ILE A 138 N ALA A 121 SHEET 1 B 4 HIS A 232 SER A 237 0 SHEET 2 B 4 ASN A 205 GLY A 210 1 N VAL A 208 O GLU A 234 SHEET 3 B 4 ILE A 255 CYS A 259 1 O LEU A 256 N VAL A 207 SHEET 4 B 4 LEU A 282 HIS A 286 1 O LEU A 285 N ASP A 257 SHEET 1 C 5 THR B 71 ALA B 73 0 SHEET 2 C 5 VAL B 44 VAL B 47 1 N ILE B 46 O PHE B 72 SHEET 3 C 5 LEU B 92 SER B 97 1 O ILE B 96 N VAL B 47 SHEET 4 C 5 PHE B 118 VAL B 123 1 O VAL B 120 N VAL B 95 SHEET 5 C 5 VAL B 136 PRO B 139 1 O ILE B 138 N ALA B 121 SHEET 1 D 4 HIS B 232 SER B 237 0 SHEET 2 D 4 ASN B 205 GLY B 210 1 N VAL B 208 O GLU B 234 SHEET 3 D 4 ILE B 255 VAL B 258 1 O LEU B 256 N VAL B 207 SHEET 4 D 4 LEU B 282 LEU B 285 1 O ILE B 283 N ASP B 257 LINK C AMSE A 1 N THR A 2 1555 1555 1.34 LINK C BMSE A 1 N THR A 2 1555 1555 1.33 LINK C ILE A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N GLU A 8 1555 1555 1.33 LINK C VAL A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N ILE A 46 1555 1555 1.33 LINK C ARG A 110 N MSE A 111 1555 1555 1.34 LINK C MSE A 111 N ALA A 112 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.31 LINK C ILE B 6 N MSE B 7 1555 1555 1.32 LINK C MSE B 7 N GLU B 8 1555 1555 1.33 LINK C VAL B 44 N MSE B 45 1555 1555 1.33 LINK C MSE B 45 N ILE B 46 1555 1555 1.33 LINK C ARG B 110 N AMSE B 111 1555 1555 1.33 LINK C ARG B 110 N BMSE B 111 1555 1555 1.34 LINK C AMSE B 111 N ALA B 112 1555 1555 1.34 LINK C BMSE B 111 N ALA B 112 1555 1555 1.34 SITE 1 AC1 12 TYR A 61 ARG A 211 GLY A 212 TYR A 215 SITE 2 AC1 12 SER A 237 GLU A 240 HOH A 394 HOH A 418 SITE 3 AC1 12 SER B 51 SER B 52 PRO B 76 SER B 77 SITE 1 AC2 3 PRO A 15 GLN A 16 GLN A 186 SITE 1 AC3 15 SER A 51 ALA A 75 PRO A 76 SER A 77 SITE 2 AC3 15 TYR B 61 ARG B 211 GLY B 212 TYR B 215 SITE 3 AC3 15 SER B 237 ALA B 239 GLU B 240 HOH B 378 SITE 4 AC3 15 HOH B 450 HOH B 466 HOH B 540 CRYST1 74.579 89.445 109.497 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013409 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009133 0.00000 HETATM 1 N AMSE A 1 44.231 84.108 15.194 0.40 25.40 N HETATM 2 N BMSE A 1 45.402 81.863 15.851 0.60 22.28 N HETATM 3 CA AMSE A 1 45.374 83.159 15.315 0.40 23.67 C HETATM 4 CA BMSE A 1 45.330 83.259 15.331 0.60 21.92 C HETATM 5 C AMSE A 1 46.662 83.815 14.809 0.40 22.25 C HETATM 6 C BMSE A 1 46.658 83.709 14.723 0.60 21.45 C HETATM 7 O AMSE A 1 47.728 83.641 15.417 0.40 23.11 O HETATM 8 O BMSE A 1 47.739 83.266 15.151 0.60 23.92 O HETATM 9 CB AMSE A 1 45.093 81.862 14.542 0.40 25.31 C HETATM 10 CB BMSE A 1 44.982 84.239 16.458 0.60 22.59 C HETATM 11 CG AMSE A 1 45.659 80.635 15.217 0.40 26.41 C HETATM 12 CG BMSE A 1 43.886 85.262 16.119 0.60 27.55 C HETATM 13 SE AMSE A 1 45.951 79.136 14.024 0.30 31.53 SE HETATM 14 SE BMSE A 1 44.332 87.083 16.659 0.45 45.85 SE HETATM 15 CE AMSE A 1 44.190 79.071 13.170 0.40 25.30 C HETATM 16 CE BMSE A 1 45.457 86.749 18.254 0.60 19.47 C