HEADER HYDROLASE 05-MAY-09 3HBU TITLE PRTC METHIONINE MUTANTS: M226H DESY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED PROTEASE C; COMPND 3 CHAIN: P; COMPND 4 SYNONYM: PROC; COMPND 5 EC: 3.4.24.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE; COMPND 10 CHAIN: Z; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA CHRYSANTHEMI; SOURCE 3 ORGANISM_TAXID: 556; SOURCE 4 GENE: PRTC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC18 DERIVATIVE; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS MET-TURN, BETA ROLL, METALLOPROTEASE, METZINCIN, HYDROLASE, METAL- KEYWDS 2 BINDING, PROTEASE, SECRETED, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR A.E.OBERHOLZER,M.BUMANN,T.HEGE,S.RUSSO,U.BAUMANN REVDAT 7 06-SEP-23 3HBU 1 REMARK REVDAT 6 13-OCT-21 3HBU 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3HBU 1 SOURCE KEYWDS REMARK REVDAT 4 01-NOV-17 3HBU 1 REMARK REVDAT 3 16-NOV-11 3HBU 1 VERSN HETATM REVDAT 2 29-SEP-09 3HBU 1 JRNL REVDAT 1 21-JUL-09 3HBU 0 JRNL AUTH A.E.OBERHOLZER,M.BUMANN,T.HEGE,S.RUSSO,U.BAUMANN JRNL TITL METZINCIN'S CANONICAL METHIONINE IS RESPONSIBLE FOR THE JRNL TITL 2 STRUCTURAL INTEGRITY OF THE ZINC-BINDING SITE JRNL REF BIOL.CHEM. V. 390 875 2009 JRNL REFN ISSN 1431-6730 JRNL PMID 19558324 JRNL DOI 10.1515/BC.2009.100 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_54 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 72451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1710 - 4.3630 1.00 4920 168 0.1880 0.2040 REMARK 3 2 4.3630 - 3.4640 1.00 4782 139 0.1460 0.1540 REMARK 3 3 3.4640 - 3.0260 1.00 4684 165 0.1570 0.1680 REMARK 3 4 3.0260 - 2.7500 1.00 4670 149 0.1660 0.2020 REMARK 3 5 2.7500 - 2.5530 1.00 4678 144 0.1660 0.1950 REMARK 3 6 2.5530 - 2.4020 1.00 4692 148 0.1590 0.1870 REMARK 3 7 2.4020 - 2.2820 1.00 4654 124 0.1530 0.1750 REMARK 3 8 2.2820 - 2.1830 1.00 4668 148 0.1480 0.1500 REMARK 3 9 2.1830 - 2.0990 1.00 4684 132 0.1460 0.1680 REMARK 3 10 2.0990 - 2.0260 1.00 4656 144 0.1440 0.1990 REMARK 3 11 2.0260 - 1.9630 1.00 4622 141 0.1490 0.1900 REMARK 3 12 1.9630 - 1.9070 1.00 4668 128 0.1480 0.1790 REMARK 3 13 1.9070 - 1.8570 1.00 4609 147 0.1560 0.1880 REMARK 3 14 1.8570 - 1.8110 1.00 4669 121 0.1580 0.1970 REMARK 3 15 1.8110 - 1.7700 1.00 4657 140 0.1650 0.2110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 67.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59200 REMARK 3 B22 (A**2) : 1.59200 REMARK 3 B33 (A**2) : -3.18500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3636 REMARK 3 ANGLE : 1.628 4939 REMARK 3 CHIRALITY : 0.084 512 REMARK 3 PLANARITY : 0.005 666 REMARK 3 DIHEDRAL : 18.038 1204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: RESID 10:225 AND CHAIN P REMARK 3 ORIGIN FOR THE GROUP (A): 39.2425 50.3943 42.1367 REMARK 3 T TENSOR REMARK 3 T11: 0.0380 T22: 0.0690 REMARK 3 T33: 0.0749 T12: 0.0218 REMARK 3 T13: 0.0354 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.0931 L22: 0.2201 REMARK 3 L33: 0.5234 L12: 0.1996 REMARK 3 L13: -0.5041 L23: -0.1836 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: 0.0450 S13: 0.1882 REMARK 3 S21: 0.0027 S22: -0.0057 S23: 0.0732 REMARK 3 S31: -0.0842 S32: -0.0826 S33: -0.1035 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: RESID 226:400 AND CHAIN P REMARK 3 ORIGIN FOR THE GROUP (A): 50.4232 52.0516 21.9863 REMARK 3 T TENSOR REMARK 3 T11: -0.0259 T22: 0.0936 REMARK 3 T33: 0.0714 T12: -0.0046 REMARK 3 T13: 0.0071 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0593 L22: 0.4575 REMARK 3 L33: 1.3098 L12: 0.1848 REMARK 3 L13: -0.3074 L23: -0.3802 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0654 S13: 0.0543 REMARK 3 S21: 0.0137 S22: 0.0492 S23: 0.1642 REMARK 3 S31: -0.0275 S32: -0.2370 S33: -0.0446 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: RESID 401:495 AND CHAIN P REMARK 3 ORIGIN FOR THE GROUP (A): 61.9787 64.9922 -1.9793 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.1444 REMARK 3 T33: 0.0749 T12: -0.0209 REMARK 3 T13: -0.0361 T23: 0.0563 REMARK 3 L TENSOR REMARK 3 L11: 0.5602 L22: 0.6584 REMARK 3 L33: 0.2687 L12: -0.2254 REMARK 3 L13: 0.1895 L23: -0.4163 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: 0.2507 S13: 0.0648 REMARK 3 S21: -0.1013 S22: 0.0698 S23: -0.0128 REMARK 3 S31: -0.0408 S32: -0.0707 S33: 0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72602 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 53.7720 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1GO8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M NACL, 0.1 M PHOSPHATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.95433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.90867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.90867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.95433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH P 816 LIES ON A SPECIAL POSITION. REMARK 375 HOH P 906 LIES ON A SPECIAL POSITION. REMARK 375 HOH P 911 LIES ON A SPECIAL POSITION. REMARK 375 HOH P 929 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU P 189 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 HIS P 198 ZN ZN P 487 1.60 REMARK 500 O HOH P 908 O HOH P 914 2.09 REMARK 500 O GLN P 429 O HOH P 912 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN P 19 95.30 -67.81 REMARK 500 ASP P 208 75.46 -154.45 REMARK 500 ASN P 355 -163.65 -125.42 REMARK 500 SER P 396 69.28 -152.21 REMARK 500 ALA P 400 61.16 -155.89 REMARK 500 ILE P 411 -54.79 -128.10 REMARK 500 ASP P 430 5.37 -153.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 485 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH P 15 O REMARK 620 2 GLY P 382 O 82.6 REMARK 620 3 GLY P 384 O 168.8 107.4 REMARK 620 4 ASP P 386 OD2 96.1 78.1 81.4 REMARK 620 5 GLN P 408 OE1 99.4 89.9 86.0 159.1 REMARK 620 6 ASP P 412 OD1 84.5 165.9 85.0 97.7 97.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 488 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU P 180 OE2 REMARK 620 2 HIS P 241 ND1 92.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 486 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS P 188 NE2 REMARK 620 2 HIS P 192 NE2 78.3 REMARK 620 3 HIS P 198 NE2 78.0 67.8 REMARK 620 4 HOH Z 436 O 112.6 135.1 155.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 487 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS P 188 NE2 REMARK 620 2 HIS P 192 NE2 84.6 REMARK 620 3 HIS P 198 NE2 78.7 65.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 480 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG P 265 O REMARK 620 2 GLY P 267 O 95.4 REMARK 620 3 SER P 269 OG 86.0 79.5 REMARK 620 4 ASP P 297 OD1 81.5 156.2 123.5 REMARK 620 5 ASP P 297 OD2 91.6 151.3 73.2 52.5 REMARK 620 6 GLY P 299 O 86.6 80.5 157.9 75.8 127.8 REMARK 620 7 ASP P 302 OD2 169.9 86.6 84.6 100.6 82.1 103.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 481 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 300 O REMARK 620 2 ASP P 302 OD1 84.5 REMARK 620 3 THR P 339 O 167.4 95.4 REMARK 620 4 GLU P 341 OE1 86.2 136.1 85.2 REMARK 620 5 GLU P 341 OE2 84.1 84.2 83.4 52.1 REMARK 620 6 HOH P 902 O 102.2 75.2 89.9 148.5 157.7 REMARK 620 7 HOH P 903 O 86.8 145.6 99.9 76.1 127.9 74.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 482 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 346 O REMARK 620 2 GLY P 348 O 96.7 REMARK 620 3 ASP P 350 OD2 84.8 83.3 REMARK 620 4 GLY P 363 O 87.1 172.6 90.7 REMARK 620 5 ALA P 365 O 80.2 83.6 158.7 103.4 REMARK 620 6 ASP P 368 OD1 169.1 81.3 84.3 93.8 110.1 REMARK 620 7 ASP P 368 OD2 142.2 110.6 122.9 69.2 77.5 47.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 483 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN P 355 O REMARK 620 2 ALA P 357 O 88.3 REMARK 620 3 ASN P 359 OD1 84.6 83.0 REMARK 620 4 GLY P 372 O 87.8 171.9 89.6 REMARK 620 5 ALA P 374 O 84.1 88.9 166.2 97.8 REMARK 620 6 ASP P 377 OD1 164.1 82.6 81.4 99.5 108.6 REMARK 620 7 ASP P 377 OD2 148.3 118.5 113.5 67.5 80.1 46.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 484 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 364 O REMARK 620 2 GLY P 366 O 108.7 REMARK 620 3 ASP P 368 OD2 80.6 81.2 REMARK 620 4 GLY P 381 O 80.1 169.1 94.3 REMARK 620 5 ALA P 383 O 83.2 79.8 149.5 108.1 REMARK 620 6 ASP P 386 OD1 155.6 84.1 81.1 85.4 120.2 REMARK 620 7 ASP P 386 OD2 137.8 107.0 126.7 67.7 81.9 49.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 489 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 373 O REMARK 620 2 GLY P 375 O 109.9 REMARK 620 3 ASP P 377 OD2 88.8 89.0 REMARK 620 4 ASP P 395 O 85.1 89.6 172.8 REMARK 620 5 ASP P 402 OD1 162.0 88.0 89.3 97.7 REMARK 620 6 HOH P 904 O 77.8 171.8 88.2 94.1 84.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 490 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GO8 RELATED DB: PDB REMARK 900 M226L REMARK 900 RELATED ID: 1GO7 RELATED DB: PDB REMARK 900 EM198,226KC REMARK 900 RELATED ID: 3HB2 RELATED DB: PDB REMARK 900 M226I REMARK 900 RELATED ID: 1K7G RELATED DB: PDB REMARK 900 WILDTYPE REMARK 900 RELATED ID: 3HBV RELATED DB: PDB DBREF 3HBU P 18 479 UNP P16317 PRTC_ERWCH 18 479 DBREF 3HBU Z 1 4 PDB 3HBU 3HBU 1 4 SEQADV 3HBU HIS P 226 UNP P16317 MET 226 ENGINEERED MUTATION SEQRES 1 P 462 ALA ASN THR SER SER ALA TYR ASN SER VAL TYR ASP PHE SEQRES 2 P 462 LEU ARG TYR HIS ASP ARG GLY ASP GLY LEU THR VAL ASN SEQRES 3 P 462 GLY LYS THR SER TYR SER ILE ASP GLN ALA ALA ALA GLN SEQRES 4 P 462 ILE THR ARG GLU ASN VAL SER TRP ASN GLY THR ASN VAL SEQRES 5 P 462 PHE GLY LYS SER ALA ASN LEU THR PHE LYS PHE LEU GLN SEQRES 6 P 462 SER VAL SER SER ILE PRO SER GLY ASP THR GLY PHE VAL SEQRES 7 P 462 LYS PHE ASN ALA GLU GLN ILE GLU GLN ALA LYS LEU SER SEQRES 8 P 462 LEU GLN SER TRP SER ASP VAL ALA ASN LEU THR PHE THR SEQRES 9 P 462 GLU VAL THR GLY ASN LYS SER ALA ASN ILE THR PHE GLY SEQRES 10 P 462 ASN TYR THR ARG ASP ALA SER GLY ASN LEU ASP TYR GLY SEQRES 11 P 462 THR GLN ALA TYR ALA TYR TYR PRO GLY ASN TYR GLN GLY SEQRES 12 P 462 ALA GLY SER SER TRP TYR ASN TYR ASN GLN SER ASN ILE SEQRES 13 P 462 ARG ASN PRO GLY SER GLU GLU TYR GLY ARG GLN THR PHE SEQRES 14 P 462 THR HIS GLU ILE GLY HIS ALA LEU GLY LEU ALA HIS PRO SEQRES 15 P 462 GLY GLU TYR ASN ALA GLY GLU GLY ASP PRO SER TYR ASN SEQRES 16 P 462 ASP ALA VAL TYR ALA GLU ASP SER TYR GLN PHE SER ILE SEQRES 17 P 462 HIS SER TYR TRP GLY GLU ASN GLU THR GLY ALA ASP TYR SEQRES 18 P 462 ASN GLY HIS TYR GLY GLY ALA PRO MET ILE ASP ASP ILE SEQRES 19 P 462 ALA ALA ILE GLN ARG LEU TYR GLY ALA ASN MET THR THR SEQRES 20 P 462 ARG THR GLY ASP SER VAL TYR GLY PHE ASN SER ASN THR SEQRES 21 P 462 ASP ARG ASP PHE TYR THR ALA THR ASP SER SER LYS ALA SEQRES 22 P 462 LEU ILE PHE SER VAL TRP ASP ALA GLY GLY THR ASP THR SEQRES 23 P 462 PHE ASP PHE SER GLY TYR SER ASN ASN GLN ARG ILE ASN SEQRES 24 P 462 LEU ASN GLU GLY SER PHE SER ASP VAL GLY GLY LEU LYS SEQRES 25 P 462 GLY ASN VAL SER ILE ALA HIS GLY VAL THR ILE GLU ASN SEQRES 26 P 462 ALA ILE GLY GLY SER GLY ASN ASP ILE LEU VAL GLY ASN SEQRES 27 P 462 SER ALA ASP ASN ILE LEU GLN GLY GLY ALA GLY ASN ASP SEQRES 28 P 462 VAL LEU TYR GLY GLY ALA GLY ALA ASP THR LEU TYR GLY SEQRES 29 P 462 GLY ALA GLY ARG ASP THR PHE VAL TYR GLY SER GLY GLN SEQRES 30 P 462 ASP SER THR VAL ALA ALA TYR ASP TRP ILE ALA ASP PHE SEQRES 31 P 462 GLN LYS GLY ILE ASP LYS ILE ASP LEU SER ALA PHE ARG SEQRES 32 P 462 ASN GLU GLY GLN LEU SER PHE VAL GLN ASP GLN PHE THR SEQRES 33 P 462 GLY LYS GLY GLN GLU VAL MET LEU GLN TRP ASP ALA ALA SEQRES 34 P 462 ASN SER ILE THR ASN LEU TRP LEU HIS GLU ALA GLY HIS SEQRES 35 P 462 SER SER VAL ASP PHE LEU VAL ARG ILE VAL GLY GLN ALA SEQRES 36 P 462 ALA GLN SER ASP ILE ILE VAL SEQRES 1 Z 4 ALA LYS ALA ALA HET CA P 480 1 HET CA P 481 1 HET CA P 482 1 HET CA P 483 1 HET CA P 484 1 HET CA P 485 1 HET ZN P 486 1 HET ZN P 487 1 HET ZN P 488 1 HET CA P 489 1 HET CL P 1 1 HET CL P 490 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 3 CA 7(CA 2+) FORMUL 9 ZN 3(ZN 2+) FORMUL 13 CL 2(CL 1-) FORMUL 15 HOH *486(H2 O) HELIX 1 1 SER P 21 ARG P 32 1 12 HELIX 2 2 SER P 49 THR P 58 1 10 HELIX 3 3 ASN P 98 ASP P 114 1 17 HELIX 4 4 GLN P 170 ASN P 175 1 6 HELIX 5 5 GLU P 179 LEU P 194 1 16 HELIX 6 6 SER P 210 ALA P 214 5 5 HELIX 7 7 GLY P 230 GLY P 235 5 6 HELIX 8 8 MET P 247 GLY P 259 1 13 HELIX 9 9 ARG P 279 THR P 283 5 5 HELIX 10 10 SER P 392 SER P 396 5 5 HELIX 11 11 THR P 397 TYR P 401 5 5 HELIX 12 12 SER P 417 GLY P 423 5 7 HELIX 13 13 ALA P 473 SER P 475 5 3 SHEET 1 A 2 THR P 41 VAL P 42 0 SHEET 2 A 2 LYS P 45 THR P 46 -1 O LYS P 45 N VAL P 42 SHEET 1 B 2 VAL P 62 SER P 63 0 SHEET 2 B 2 GLY P 66 THR P 67 -1 O GLY P 66 N SER P 63 SHEET 1 C 6 LEU P 118 GLU P 122 0 SHEET 2 C 6 ALA P 74 PHE P 80 1 N LEU P 76 O THR P 119 SHEET 3 C 6 ILE P 131 TYR P 136 1 O ILE P 131 N THR P 77 SHEET 4 C 6 SER P 163 ASN P 167 1 O TYR P 166 N TYR P 136 SHEET 5 C 6 ALA P 150 TYR P 153 -1 N TYR P 151 O TRP P 165 SHEET 6 C 6 LYS Z 2 ALA Z 3 -1 O ALA Z 3 N ALA P 152 SHEET 1 D10 VAL P 270 GLY P 272 0 SHEET 2 D10 THR P 303 ASP P 305 1 O ASP P 305 N TYR P 271 SHEET 3 D10 ASN P 342 ILE P 344 1 O ILE P 344 N PHE P 304 SHEET 4 D10 ILE P 360 GLN P 362 1 O GLN P 362 N ALA P 343 SHEET 5 D10 THR P 378 TYR P 380 1 O TYR P 380 N LEU P 361 SHEET 6 D10 ASP P 402 ILE P 404 1 O TRP P 403 N LEU P 379 SHEET 7 D10 PHE P 464 VAL P 469 1 O ARG P 467 N ILE P 404 SHEET 8 D10 ILE P 449 HIS P 455 -1 N LEU P 452 O VAL P 466 SHEET 9 D10 GLU P 438 ASP P 444 -1 N GLN P 442 O ASN P 451 SHEET 10 D10 SER P 426 PHE P 427 1 N SER P 426 O VAL P 439 SHEET 1 E 3 PHE P 293 VAL P 295 0 SHEET 2 E 3 VAL P 332 ILE P 334 1 O SER P 333 N VAL P 295 SHEET 3 E 3 PHE P 322 SER P 323 -1 N SER P 323 O VAL P 332 SHEET 1 F 6 ARG P 314 ASN P 316 0 SHEET 2 F 6 ILE P 351 VAL P 353 1 O ILE P 351 N ILE P 315 SHEET 3 F 6 VAL P 369 TYR P 371 1 O VAL P 369 N LEU P 352 SHEET 4 F 6 THR P 387 VAL P 389 1 O VAL P 389 N LEU P 370 SHEET 5 F 6 LYS P 413 ASP P 415 1 O LYS P 413 N PHE P 388 SHEET 6 F 6 ILE P 477 ILE P 478 1 O ILE P 478 N ILE P 414 LINK O HOH P 15 CA CA P 485 1555 1555 2.44 LINK OE2 GLU P 180 ZN ZN P 488 1555 1555 2.14 LINK NE2AHIS P 188 ZN ZN P 486 1555 1555 2.11 LINK NE2BHIS P 188 ZN ZN P 487 1555 1555 2.01 LINK NE2 HIS P 192 ZN ZN P 486 1555 1555 2.19 LINK NE2 HIS P 192 ZN ZN P 487 1555 1555 2.19 LINK NE2 HIS P 198 ZN ZN P 486 1555 1555 1.99 LINK NE2 HIS P 198 ZN ZN P 487 1555 1555 2.12 LINK ND1 HIS P 241 ZN ZN P 488 1555 1555 2.35 LINK O ARG P 265 CA CA P 480 1555 1555 2.37 LINK O GLY P 267 CA CA P 480 1555 1555 2.39 LINK OG SER P 269 CA CA P 480 1555 1555 2.48 LINK OD1 ASP P 297 CA CA P 480 1555 1555 2.48 LINK OD2 ASP P 297 CA CA P 480 1555 1555 2.49 LINK O GLY P 299 CA CA P 480 1555 1555 2.32 LINK O GLY P 300 CA CA P 481 1555 1555 2.42 LINK OD2 ASP P 302 CA CA P 480 1555 1555 2.34 LINK OD1 ASP P 302 CA CA P 481 1555 1555 2.37 LINK O THR P 339 CA CA P 481 1555 1555 2.39 LINK OE1 GLU P 341 CA CA P 481 1555 1555 2.48 LINK OE2 GLU P 341 CA CA P 481 1555 1555 2.52 LINK O GLY P 346 CA CA P 482 1555 1555 2.40 LINK O GLY P 348 CA CA P 482 1555 1555 2.43 LINK OD2 ASP P 350 CA CA P 482 1555 1555 2.40 LINK O ASN P 355 CA CA P 483 1555 1555 2.34 LINK O ALA P 357 CA CA P 483 1555 1555 2.44 LINK OD1 ASN P 359 CA CA P 483 1555 1555 2.38 LINK O GLY P 363 CA CA P 482 1555 1555 2.35 LINK O GLY P 364 CA CA P 484 1555 1555 2.42 LINK O ALA P 365 CA CA P 482 1555 1555 2.39 LINK O GLY P 366 CA CA P 484 1555 1555 2.39 LINK OD1 ASP P 368 CA CA P 482 1555 1555 2.40 LINK OD2 ASP P 368 CA CA P 482 1555 1555 2.93 LINK OD2 ASP P 368 CA CA P 484 1555 1555 2.37 LINK O GLY P 372 CA CA P 483 1555 1555 2.36 LINK O GLY P 373 CA CA P 489 1555 1555 2.37 LINK O ALA P 374 CA CA P 483 1555 1555 2.35 LINK O GLY P 375 CA CA P 489 1555 1555 2.38 LINK OD1 ASP P 377 CA CA P 483 1555 1555 2.43 LINK OD2 ASP P 377 CA CA P 483 1555 1555 2.95 LINK OD2 ASP P 377 CA CA P 489 1555 1555 2.29 LINK O GLY P 381 CA CA P 484 1555 1555 2.39 LINK O GLY P 382 CA CA P 485 1555 1555 2.52 LINK O ALA P 383 CA CA P 484 1555 1555 2.42 LINK O GLY P 384 CA CA P 485 1555 1555 2.41 LINK OD1 ASP P 386 CA CA P 484 1555 1555 2.40 LINK OD2 ASP P 386 CA CA P 484 1555 1555 2.78 LINK OD2 ASP P 386 CA CA P 485 1555 1555 2.33 LINK O ASP P 395 CA CA P 489 1555 1555 2.31 LINK OD1 ASP P 402 CA CA P 489 1555 1555 2.47 LINK OE1 GLN P 408 CA CA P 485 1555 1555 2.45 LINK OD1 ASP P 412 CA CA P 485 1555 1555 2.51 LINK CA CA P 481 O HOH P 902 1555 1555 2.36 LINK CA CA P 481 O HOH P 903 1555 1555 2.46 LINK ZN ZN P 486 O HOH Z 436 1555 1555 2.19 LINK CA CA P 489 O HOH P 904 1555 1555 2.46 SITE 1 AC1 6 ARG P 265 GLY P 267 SER P 269 ASP P 297 SITE 2 AC1 6 GLY P 299 ASP P 302 SITE 1 AC2 6 GLY P 300 ASP P 302 THR P 339 GLU P 341 SITE 2 AC2 6 HOH P 902 HOH P 903 SITE 1 AC3 6 GLY P 346 GLY P 348 ASP P 350 GLY P 363 SITE 2 AC3 6 ALA P 365 ASP P 368 SITE 1 AC4 6 ASN P 355 ALA P 357 ASN P 359 GLY P 372 SITE 2 AC4 6 ALA P 374 ASP P 377 SITE 1 AC5 6 GLY P 364 GLY P 366 ASP P 368 GLY P 381 SITE 2 AC5 6 ALA P 383 ASP P 386 SITE 1 AC6 6 HOH P 15 GLY P 382 GLY P 384 ASP P 386 SITE 2 AC6 6 GLN P 408 ASP P 412 SITE 1 AC7 6 HIS P 188 HIS P 192 HIS P 198 ZN P 487 SITE 2 AC7 6 ALA Z 4 HOH Z 436 SITE 1 AC8 5 HIS P 188 HIS P 192 HIS P 198 HIS P 226 SITE 2 AC8 5 ZN P 486 SITE 1 AC9 3 GLU P 180 HIS P 241 HOH P 687 SITE 1 BC1 6 GLY P 373 GLY P 375 ASP P 377 ASP P 395 SITE 2 BC1 6 ASP P 402 HOH P 904 SITE 1 BC2 5 ASN P 355 SER P 356 ALA P 374 HOH P 781 SITE 2 BC2 5 HOH P 843 SITE 1 BC3 3 TYR P 146 ARG P 467 HOH P 956 CRYST1 102.112 102.112 122.863 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009793 0.005654 0.000000 0.00000 SCALE2 0.000000 0.011308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008139 0.00000