HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-MAY-09 3HC1 TITLE CRYSTAL STRUCTURE OF HDOD DOMAIN PROTEIN WITH UNKNOWN FUNCTION TITLE 2 (NP_953345.1) FROM GEOBACTER SULFURREDUCENS AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED HDOD DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HD DOMAIN PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 35554; SOURCE 4 GENE: GSU2296, NP_953345.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_953345.1, HDOD DOMAIN PROTEIN WITH UNKNOWN FUNCTION, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3HC1 1 REMARK SEQADV LINK REVDAT 4 24-JUL-19 3HC1 1 REMARK LINK REVDAT 3 25-OCT-17 3HC1 1 REMARK REVDAT 2 13-JUL-11 3HC1 1 VERSN REVDAT 1 02-JUN-09 3HC1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HDOD DOMAIN PROTEIN WITH UNKNOWN JRNL TITL 2 FUNCTION (NP_953345.1) FROM GEOBACTER SULFURREDUCENS AT 1.90 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.49000 REMARK 3 B22 (A**2) : 1.04000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.555 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2432 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1618 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3317 ; 1.574 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3953 ; 1.060 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 5.217 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;31.629 ;23.551 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 401 ;14.375 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2715 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 504 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1512 ; 2.054 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 613 ; 0.595 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2451 ; 3.179 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 920 ; 5.441 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 858 ; 7.655 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2540 31.3479 21.8305 REMARK 3 T TENSOR REMARK 3 T11: 0.0093 T22: 0.0081 REMARK 3 T33: 0.0032 T12: -0.0011 REMARK 3 T13: 0.0029 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.0054 L22: 0.8397 REMARK 3 L33: 0.7802 L12: -0.0966 REMARK 3 L13: 0.0314 L23: 0.2026 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: 0.1005 S13: 0.0185 REMARK 3 S21: -0.0287 S22: 0.0084 S23: -0.0422 REMARK 3 S31: 0.0131 S32: 0.0421 S33: -0.0298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. GLYCEROL, POTASSIUM AND CHLORIDE MODELED ARE PRESENT IN REMARK 3 CRYSTALLIZATION/CRYO CONDITIONS. 5. THE PRESENCE OF FE IONS WERE REMARK 3 CONFIRMED BY ANOMALOUS DIFFERENCE FOURIERS AND X-RAY REMARK 3 FLUORESCENCE EXPERIMENTS. REMARK 4 REMARK 4 3HC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97932,0.97911 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.375 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : 0.76100 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M KTHIOCYANATE, 20.0000% PEG REMARK 280 -3350, NO BUFFER PH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.31550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE REMARK 300 STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 ILE A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 ARG A 34 CD NE CZ NH1 NH2 REMARK 470 GLN A 57 CG CD OE1 NE2 REMARK 470 GLN A 168 CG CD OE1 NE2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 LEU A 303 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 67 OG SER A 73 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 202 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 295 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 -143.03 68.27 REMARK 500 PHE A 247 -11.28 -150.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 306 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 121 NE2 REMARK 620 2 HIS A 151 NE2 88.0 REMARK 620 3 ASP A 152 OD2 88.6 82.2 REMARK 620 4 ASP A 237 OD1 83.8 97.2 172.4 REMARK 620 5 GLU A 248 OE1 86.8 169.1 88.1 91.8 REMARK 620 6 HOH A 318 O 169.0 96.9 101.8 85.8 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 152 OD1 REMARK 620 2 HIS A 192 NE2 89.3 REMARK 620 3 HIS A 216 NE2 92.2 97.1 REMARK 620 4 HIS A 217 NE2 171.5 85.0 82.3 REMARK 620 5 GLU A 248 OE2 94.2 89.8 170.7 92.0 REMARK 620 6 HOH A 318 O 94.8 175.5 84.9 91.3 87.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394418 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HC1 A 1 304 UNP Q74AQ6 Q74AQ6_GEOSL 1 304 SEQADV 3HC1 GLY A 0 UNP Q74AQ6 EXPRESSION TAG SEQRES 1 A 305 GLY MSE ASP ILE SER GLY ARG ASP VAL GLU THR ARG LEU SEQRES 2 A 305 THR LEU ALA ARG GLU PHE MSE SER GLY VAL ASP GLU LEU SEQRES 3 A 305 PRO THR VAL PRO ASP ILE VAL LEU ARG ILE ALA GLY LYS SEQRES 4 A 305 LEU ASN ASP PRO ASP VAL ALA ILE ASP GLU VAL ALA ASP SEQRES 5 A 305 LEU LEU LEU GLN ASP GLN VAL LEU THR ALA ARG VAL VAL SEQRES 6 A 305 HIS LEU ALA ASN SER PRO LEU TYR SER ALA ALA ARG PRO SEQRES 7 A 305 ILE SER SER ILE ARG ASP ALA VAL ILE TYR LEU GLY LEU SEQRES 8 A 305 ASP LEU LEU ARG GLU ALA ILE PHE THR CYS ALA ILE VAL SEQRES 9 A 305 ASP LEU PHE LYS THR GLY LYS GLY PRO LEU ASN ARG SER SEQRES 10 A 305 THR LEU TRP ALA HIS SER LEU GLY VAL ALA ARG ILE ALA SEQRES 11 A 305 LYS LEU ILE ALA GLU ARG THR GLY PHE LEU ASN PRO VAL SEQRES 12 A 305 ASN VAL TYR VAL ALA GLY LEU LEU HIS ASP VAL GLY GLU SEQRES 13 A 305 VAL PHE ILE ASN PHE PHE ARG GLY LYS GLU PHE SER GLN SEQRES 14 A 305 VAL VAL THR LEU VAL ASP GLU GLU LYS ILE THR PHE GLY SEQRES 15 A 305 GLN ALA GLU GLU ARG LEU PHE GLY THR SER HIS CYS GLU SEQRES 16 A 305 VAL GLY PHE ALA LEU ALA LYS ARG TRP SER LEU ASN GLU SEQRES 17 A 305 PHE ILE CYS ASP THR ILE LEU TYR HIS HIS ASP ILE GLU SEQRES 18 A 305 ALA VAL PRO TYR LYS GLN ALA ALA ILE VAL ALA MSE VAL SEQRES 19 A 305 ALA PHE ALA ASP GLU TYR CYS THR LEU ARG ARG LEU GLY SEQRES 20 A 305 PHE GLU GLY HIS LYS PRO VAL ASP SER VAL ARG THR LEU SEQRES 21 A 305 LEU GLU ASN HIS PRO SER TRP GLY VAL ILE ARG ARG SER SEQRES 22 A 305 LEU GLY GLY SER ASP PHE ASP GLU LYS LEU ILE VAL ALA SEQRES 23 A 305 GLU LEU ASP SER SER ILE VAL GLU ILE ARG ALA ALA VAL SEQRES 24 A 305 ASP GLU LEU PHE LEU LEU MODRES 3HC1 MSE A 19 MET SELENOMETHIONINE MODRES 3HC1 MSE A 232 MET SELENOMETHIONINE HET MSE A 19 8 HET MSE A 232 8 HET FE A 305 1 HET FE A 306 1 HET CL A 307 1 HET K A 308 1 HET GOL A 309 6 HET GOL A 310 6 HET GOL A 311 6 HET GOL A 312 6 HETNAM MSE SELENOMETHIONINE HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 FE 2(FE 3+) FORMUL 4 CL CL 1- FORMUL 5 K K 1+ FORMUL 6 GOL 4(C3 H8 O3) FORMUL 10 HOH *165(H2 O) HELIX 1 1 ASP A 7 GLY A 21 1 15 HELIX 2 2 PRO A 29 LEU A 39 1 11 HELIX 3 3 ALA A 45 LEU A 54 1 10 HELIX 4 4 ASP A 56 SER A 69 1 14 HELIX 5 5 SER A 69 ALA A 74 1 6 HELIX 6 6 SER A 80 THR A 108 1 29 HELIX 7 7 ASN A 114 THR A 136 1 23 HELIX 8 8 ASN A 140 LEU A 150 1 11 HELIX 9 9 ASP A 152 ARG A 162 1 11 HELIX 10 10 ARG A 162 LYS A 177 1 16 HELIX 11 11 THR A 179 GLY A 189 1 11 HELIX 12 12 SER A 191 TRP A 203 1 13 HELIX 13 13 ASN A 206 HIS A 216 1 11 HELIX 14 14 ASP A 218 VAL A 222 5 5 HELIX 15 15 ALA A 227 ARG A 243 1 17 HELIX 16 16 SER A 255 HIS A 263 1 9 HELIX 17 17 PRO A 264 LEU A 273 1 10 HELIX 18 18 ASP A 279 PHE A 302 1 24 LINK C PHE A 18 N MSE A 19 1555 1555 1.33 LINK C MSE A 19 N SER A 20 1555 1555 1.33 LINK C ALA A 231 N MSE A 232 1555 1555 1.35 LINK C MSE A 232 N VAL A 233 1555 1555 1.32 LINK NE2 HIS A 121 FE FE A 306 1555 1555 2.21 LINK NE2 HIS A 151 FE FE A 306 1555 1555 2.33 LINK OD1 ASP A 152 FE FE A 305 1555 1555 2.17 LINK OD2 ASP A 152 FE FE A 306 1555 1555 2.13 LINK NE2 HIS A 192 FE FE A 305 1555 1555 2.30 LINK NE2 HIS A 216 FE FE A 305 1555 1555 2.19 LINK NE2 HIS A 217 FE FE A 305 1555 1555 2.19 LINK OD1 ASP A 237 FE FE A 306 1555 1555 2.25 LINK OE2 GLU A 248 FE FE A 305 1555 1555 2.25 LINK OE1 GLU A 248 FE FE A 306 1555 1555 2.24 LINK FE FE A 305 O HOH A 318 1555 1555 1.89 LINK FE FE A 306 O HOH A 318 1555 1555 1.99 SITE 1 AC1 7 ASP A 152 HIS A 192 HIS A 216 HIS A 217 SITE 2 AC1 7 GLU A 248 FE A 306 HOH A 318 SITE 1 AC2 7 HIS A 121 HIS A 151 ASP A 152 ASP A 237 SITE 2 AC2 7 GLU A 248 FE A 305 HOH A 318 SITE 1 AC3 1 ARG A 16 SITE 1 AC4 5 ASP A 56 VAL A 58 LEU A 59 ARG A 62 SITE 2 AC4 5 ASP A 104 SITE 1 AC5 1 ARG A 62 SITE 1 AC6 6 LEU A 71 TYR A 72 LEU A 92 GLU A 95 SITE 2 AC6 6 LYS A 130 GLU A 134 SITE 1 AC7 9 PRO A 26 THR A 27 VAL A 28 PRO A 29 SITE 2 AC7 9 ASP A 104 LEU A 105 THR A 108 HOH A 325 SITE 3 AC7 9 HOH A 465 CRYST1 47.567 66.631 54.412 90.00 111.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021023 0.000000 0.008475 0.00000 SCALE2 0.000000 0.015008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019816 0.00000