data_3HCZ # _entry.id 3HCZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3HCZ RCSB RCSB052982 WWPDB D_1000052982 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC61559.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HCZ _pdbx_database_status.recvd_initial_deposition_date 2009-05-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Marshall, N.' 2 'Cobb, G.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of a domain of possible thiol-disulfide isomerase from Cytophaga hutchinsonii ATCC 33406.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Marshall, N.' 2 primary 'Cobb, G.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3HCZ _cell.length_a 55.011 _cell.length_b 55.011 _cell.length_c 126.072 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HCZ _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Possible thiol-disulfide isomerase' 17620.074 1 ? ? 'residues 330-474' ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 4 water nat water 18.015 124 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAPLLLGKKAPNLY(MSE)TDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKD EEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKTK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAPLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWL KFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKTK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC61559.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 PRO n 1 5 LEU n 1 6 LEU n 1 7 LEU n 1 8 GLY n 1 9 LYS n 1 10 LYS n 1 11 ALA n 1 12 PRO n 1 13 ASN n 1 14 LEU n 1 15 TYR n 1 16 MSE n 1 17 THR n 1 18 ASP n 1 19 THR n 1 20 THR n 1 21 GLY n 1 22 THR n 1 23 TYR n 1 24 ARG n 1 25 TYR n 1 26 LEU n 1 27 TYR n 1 28 ASP n 1 29 VAL n 1 30 GLN n 1 31 ALA n 1 32 LYS n 1 33 TYR n 1 34 THR n 1 35 ILE n 1 36 LEU n 1 37 PHE n 1 38 PHE n 1 39 TRP n 1 40 ASP n 1 41 SER n 1 42 GLN n 1 43 CYS n 1 44 GLY n 1 45 HIS n 1 46 CYS n 1 47 GLN n 1 48 GLN n 1 49 GLU n 1 50 THR n 1 51 PRO n 1 52 LYS n 1 53 LEU n 1 54 TYR n 1 55 ASP n 1 56 TRP n 1 57 TRP n 1 58 LEU n 1 59 LYS n 1 60 ASN n 1 61 ARG n 1 62 ALA n 1 63 LYS n 1 64 GLY n 1 65 ILE n 1 66 GLN n 1 67 VAL n 1 68 TYR n 1 69 ALA n 1 70 ALA n 1 71 ASN n 1 72 ILE n 1 73 GLU n 1 74 ARG n 1 75 LYS n 1 76 ASP n 1 77 GLU n 1 78 GLU n 1 79 TRP n 1 80 LEU n 1 81 LYS n 1 82 PHE n 1 83 ILE n 1 84 ARG n 1 85 SER n 1 86 LYS n 1 87 LYS n 1 88 ILE n 1 89 GLY n 1 90 GLY n 1 91 TRP n 1 92 LEU n 1 93 ASN n 1 94 VAL n 1 95 ARG n 1 96 ASP n 1 97 SER n 1 98 LYS n 1 99 ASN n 1 100 HIS n 1 101 THR n 1 102 ASP n 1 103 PHE n 1 104 LYS n 1 105 ILE n 1 106 THR n 1 107 TYR n 1 108 ASP n 1 109 ILE n 1 110 TYR n 1 111 ALA n 1 112 THR n 1 113 PRO n 1 114 VAL n 1 115 LEU n 1 116 TYR n 1 117 VAL n 1 118 LEU n 1 119 ASP n 1 120 LYS n 1 121 ASN n 1 122 LYS n 1 123 VAL n 1 124 ILE n 1 125 ILE n 1 126 ALA n 1 127 LYS n 1 128 ARG n 1 129 ILE n 1 130 GLY n 1 131 TYR n 1 132 GLU n 1 133 ASN n 1 134 LEU n 1 135 ASP n 1 136 ASP n 1 137 PHE n 1 138 LEU n 1 139 VAL n 1 140 GLN n 1 141 TYR n 1 142 GLU n 1 143 LYS n 1 144 SER n 1 145 LEU n 1 146 LYS n 1 147 THR n 1 148 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CHU_0134, Cytophaga hutchinsonii' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 33406' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Cytophaga hutchinsonii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269798 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain pPK1037 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q11YT9_CYTH3 _struct_ref.pdbx_db_accession Q11YT9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFI RSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKTK ; _struct_ref.pdbx_align_begin 330 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HCZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 148 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q11YT9 _struct_ref_seq.db_align_beg 330 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 474 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 330 _struct_ref_seq.pdbx_auth_seq_align_end 474 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3HCZ SER A 1 ? UNP Q11YT9 ? ? 'expression tag' 327 1 1 3HCZ ASN A 2 ? UNP Q11YT9 ? ? 'expression tag' 328 2 1 3HCZ ALA A 3 ? UNP Q11YT9 ? ? 'expression tag' 329 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3HCZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.2 M Ammonium Sulfate, 0.1 M MES, 30% Peg 5000 MME, 3% 1,6-diaminohexane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-12-10 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97926 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97926 # _reflns.entry_id 3HCZ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 33.4 _reflns.d_resolution_high 1.88 _reflns.number_obs 16600 _reflns.number_all 16600 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 40.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.88 _reflns_shell.d_res_low 1.91 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.876 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 12.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 816 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3HCZ _refine.ls_number_reflns_obs 15660 _refine.ls_number_reflns_all 15660 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.39 _refine.ls_d_res_high 1.88 _refine.ls_percent_reflns_obs 99.48 _refine.ls_R_factor_obs 0.18076 _refine.ls_R_factor_all 0.18076 _refine.ls_R_factor_R_work 0.17880 _refine.ls_R_factor_R_free 0.21915 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 830 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 21.056 _refine.aniso_B[1][1] 0.22 _refine.aniso_B[2][2] 0.22 _refine.aniso_B[3][3] -0.44 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.129 _refine.pdbx_overall_ESU_R_Free 0.126 _refine.overall_SU_ML 0.086 _refine.overall_SU_B 6.498 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1236 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1388 _refine_hist.d_res_high 1.88 _refine_hist.d_res_low 33.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1331 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.509 1.968 ? 1810 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.416 5.000 ? 157 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44.043 24.062 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.266 15.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.708 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 190 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 984 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.881 1.500 ? 751 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.573 2.000 ? 1221 'X-RAY DIFFRACTION' ? r_scbond_it 2.438 3.000 ? 580 'X-RAY DIFFRACTION' ? r_scangle_it 3.906 4.500 ? 583 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.876 _refine_ls_shell.d_res_low 1.925 _refine_ls_shell.number_reflns_R_work 1090 _refine_ls_shell.R_factor_R_work 0.216 _refine_ls_shell.percent_reflns_obs 96.64 _refine_ls_shell.R_factor_R_free 0.258 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1150 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HCZ _struct.title 'The crystal structure of a domain of possible thiol-disulfide isomerase from Cytophaga hutchinsonii ATCC 33406.' _struct.pdbx_descriptor 'Possible thiol-disulfide isomerase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HCZ _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text ;APC61559.2, thiol-disulfide isomerase, Cytophaga hutchinsonii ATCC, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, Isomerase, unknown function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details 'Experimentally unknown. It is predicted that the domain is monomeric.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 25 ? VAL A 29 ? TYR A 351 VAL A 355 5 ? 5 HELX_P HELX_P2 2 ASP A 40 ? GLY A 44 ? ASP A 366 GLY A 370 5 ? 5 HELX_P HELX_P3 3 GLN A 48 ? ARG A 61 ? GLN A 374 ARG A 387 1 ? 14 HELX_P HELX_P4 4 ASP A 76 ? LYS A 87 ? ASP A 402 LYS A 413 1 ? 12 HELX_P HELX_P5 5 ASP A 102 ? ASP A 108 ? ASP A 428 ASP A 434 1 ? 7 HELX_P HELX_P6 6 GLY A 130 ? GLU A 132 ? GLY A 456 GLU A 458 5 ? 3 HELX_P HELX_P7 7 ASN A 133 ? LYS A 148 ? ASN A 459 LYS A 474 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 46 SG ? ? A CYS 372 A CYS 372 7_555 ? ? ? ? ? ? ? 2.657 ? covale1 covale ? ? A TYR 15 C ? ? ? 1_555 A MSE 16 N ? ? A TYR 341 A MSE 342 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale ? ? A MSE 16 C ? ? ? 1_555 A THR 17 N ? ? A MSE 342 A THR 343 1_555 ? ? ? ? ? ? ? 1.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 112 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 438 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 113 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 439 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.84 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 92 ? ARG A 95 ? LEU A 418 ARG A 421 A 2 ILE A 65 ? ASN A 71 ? ILE A 391 ASN A 397 A 3 TYR A 33 ? TRP A 39 ? TYR A 359 TRP A 365 A 4 VAL A 114 ? LEU A 118 ? VAL A 440 LEU A 444 A 5 ILE A 124 ? LYS A 127 ? ILE A 450 LYS A 453 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 94 ? O VAL A 420 N ASN A 71 ? N ASN A 397 A 2 3 O GLN A 66 ? O GLN A 392 N ILE A 35 ? N ILE A 361 A 3 4 N PHE A 38 ? N PHE A 364 O VAL A 114 ? O VAL A 440 A 4 5 N VAL A 117 ? N VAL A 443 O ILE A 125 ? O ILE A 451 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 2' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 3' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 4' AC5 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 5' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE FMT A 475' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HOH H . ? HOH A 11 . ? 1_555 ? 2 AC1 10 HOH H . ? HOH A 44 . ? 1_555 ? 3 AC1 10 HOH H . ? HOH A 81 . ? 1_555 ? 4 AC1 10 HOH H . ? HOH A 92 . ? 1_555 ? 5 AC1 10 HOH H . ? HOH A 122 . ? 1_555 ? 6 AC1 10 PRO A 12 ? PRO A 338 . ? 1_555 ? 7 AC1 10 ASN A 13 ? ASN A 339 . ? 1_555 ? 8 AC1 10 TYR A 23 ? TYR A 349 . ? 8_555 ? 9 AC1 10 TYR A 27 ? TYR A 353 . ? 1_555 ? 10 AC1 10 LYS A 98 ? LYS A 424 . ? 8_555 ? 11 AC2 3 LYS A 75 ? LYS A 401 . ? 1_555 ? 12 AC2 3 ASP A 76 ? ASP A 402 . ? 1_555 ? 13 AC2 3 GLU A 77 ? GLU A 403 . ? 1_555 ? 14 AC3 5 HOH H . ? HOH A 69 . ? 5_555 ? 15 AC3 5 HOH H . ? HOH A 83 . ? 5_555 ? 16 AC3 5 ARG A 24 ? ARG A 350 . ? 5_555 ? 17 AC3 5 GLN A 66 ? GLN A 392 . ? 5_555 ? 18 AC3 5 ARG A 128 ? ARG A 454 . ? 1_555 ? 19 AC4 5 HOH H . ? HOH A 117 . ? 1_555 ? 20 AC4 5 ALA A 31 ? ALA A 357 . ? 1_555 ? 21 AC4 5 LYS A 32 ? LYS A 358 . ? 1_555 ? 22 AC4 5 GLY A 64 ? GLY A 390 . ? 1_555 ? 23 AC4 5 TYR A 110 ? TYR A 436 . ? 5_545 ? 24 AC5 7 HOH H . ? HOH A 89 . ? 1_555 ? 25 AC5 7 HOH H . ? HOH A 108 . ? 1_555 ? 26 AC5 7 ARG A 74 ? ARG A 400 . ? 1_555 ? 27 AC5 7 THR A 101 ? THR A 427 . ? 1_555 ? 28 AC5 7 ASP A 102 ? ASP A 428 . ? 1_555 ? 29 AC5 7 PHE A 103 ? PHE A 429 . ? 1_555 ? 30 AC5 7 LYS A 104 ? LYS A 430 . ? 1_555 ? 31 AC6 1 HOH H . ? HOH A 42 . ? 1_555 ? # _database_PDB_matrix.entry_id 3HCZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HCZ _atom_sites.fract_transf_matrix[1][1] 0.018178 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018178 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007932 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 327 ? ? ? A . n A 1 2 ASN 2 328 328 ASN ASN A . n A 1 3 ALA 3 329 329 ALA ALA A . n A 1 4 PRO 4 330 330 PRO PRO A . n A 1 5 LEU 5 331 331 LEU LEU A . n A 1 6 LEU 6 332 332 LEU LEU A . n A 1 7 LEU 7 333 333 LEU LEU A . n A 1 8 GLY 8 334 334 GLY GLY A . n A 1 9 LYS 9 335 335 LYS LYS A . n A 1 10 LYS 10 336 336 LYS LYS A . n A 1 11 ALA 11 337 337 ALA ALA A . n A 1 12 PRO 12 338 338 PRO PRO A . n A 1 13 ASN 13 339 339 ASN ASN A . n A 1 14 LEU 14 340 340 LEU LEU A . n A 1 15 TYR 15 341 341 TYR TYR A . n A 1 16 MSE 16 342 342 MSE MSE A . n A 1 17 THR 17 343 343 THR THR A . n A 1 18 ASP 18 344 344 ASP ASP A . n A 1 19 THR 19 345 345 THR THR A . n A 1 20 THR 20 346 346 THR THR A . n A 1 21 GLY 21 347 347 GLY GLY A . n A 1 22 THR 22 348 348 THR THR A . n A 1 23 TYR 23 349 349 TYR TYR A . n A 1 24 ARG 24 350 350 ARG ARG A . n A 1 25 TYR 25 351 351 TYR TYR A . n A 1 26 LEU 26 352 352 LEU LEU A . n A 1 27 TYR 27 353 353 TYR TYR A . n A 1 28 ASP 28 354 354 ASP ASP A . n A 1 29 VAL 29 355 355 VAL VAL A . n A 1 30 GLN 30 356 356 GLN GLN A . n A 1 31 ALA 31 357 357 ALA ALA A . n A 1 32 LYS 32 358 358 LYS LYS A . n A 1 33 TYR 33 359 359 TYR TYR A . n A 1 34 THR 34 360 360 THR THR A . n A 1 35 ILE 35 361 361 ILE ILE A . n A 1 36 LEU 36 362 362 LEU LEU A . n A 1 37 PHE 37 363 363 PHE PHE A . n A 1 38 PHE 38 364 364 PHE PHE A . n A 1 39 TRP 39 365 365 TRP TRP A . n A 1 40 ASP 40 366 366 ASP ASP A . n A 1 41 SER 41 367 367 SER SER A . n A 1 42 GLN 42 368 368 GLN GLN A . n A 1 43 CYS 43 369 369 CYS CYS A . n A 1 44 GLY 44 370 370 GLY GLY A . n A 1 45 HIS 45 371 371 HIS HIS A . n A 1 46 CYS 46 372 372 CYS CYS A . n A 1 47 GLN 47 373 373 GLN GLN A . n A 1 48 GLN 48 374 374 GLN GLN A . n A 1 49 GLU 49 375 375 GLU GLU A . n A 1 50 THR 50 376 376 THR THR A . n A 1 51 PRO 51 377 377 PRO PRO A . n A 1 52 LYS 52 378 378 LYS LYS A . n A 1 53 LEU 53 379 379 LEU LEU A . n A 1 54 TYR 54 380 380 TYR TYR A . n A 1 55 ASP 55 381 381 ASP ASP A . n A 1 56 TRP 56 382 382 TRP TRP A . n A 1 57 TRP 57 383 383 TRP TRP A . n A 1 58 LEU 58 384 384 LEU LEU A . n A 1 59 LYS 59 385 385 LYS LYS A . n A 1 60 ASN 60 386 386 ASN ASN A . n A 1 61 ARG 61 387 387 ARG ARG A . n A 1 62 ALA 62 388 388 ALA ALA A . n A 1 63 LYS 63 389 389 LYS LYS A . n A 1 64 GLY 64 390 390 GLY GLY A . n A 1 65 ILE 65 391 391 ILE ILE A . n A 1 66 GLN 66 392 392 GLN GLN A . n A 1 67 VAL 67 393 393 VAL VAL A . n A 1 68 TYR 68 394 394 TYR TYR A . n A 1 69 ALA 69 395 395 ALA ALA A . n A 1 70 ALA 70 396 396 ALA ALA A . n A 1 71 ASN 71 397 397 ASN ASN A . n A 1 72 ILE 72 398 398 ILE ILE A . n A 1 73 GLU 73 399 399 GLU GLU A . n A 1 74 ARG 74 400 400 ARG ARG A . n A 1 75 LYS 75 401 401 LYS LYS A . n A 1 76 ASP 76 402 402 ASP ASP A . n A 1 77 GLU 77 403 403 GLU GLU A . n A 1 78 GLU 78 404 404 GLU GLU A . n A 1 79 TRP 79 405 405 TRP TRP A . n A 1 80 LEU 80 406 406 LEU LEU A . n A 1 81 LYS 81 407 407 LYS LYS A . n A 1 82 PHE 82 408 408 PHE PHE A . n A 1 83 ILE 83 409 409 ILE ILE A . n A 1 84 ARG 84 410 410 ARG ARG A . n A 1 85 SER 85 411 411 SER SER A . n A 1 86 LYS 86 412 412 LYS LYS A . n A 1 87 LYS 87 413 413 LYS LYS A . n A 1 88 ILE 88 414 414 ILE ILE A . n A 1 89 GLY 89 415 415 GLY GLY A . n A 1 90 GLY 90 416 416 GLY GLY A . n A 1 91 TRP 91 417 417 TRP TRP A . n A 1 92 LEU 92 418 418 LEU LEU A . n A 1 93 ASN 93 419 419 ASN ASN A . n A 1 94 VAL 94 420 420 VAL VAL A . n A 1 95 ARG 95 421 421 ARG ARG A . n A 1 96 ASP 96 422 422 ASP ASP A . n A 1 97 SER 97 423 423 SER SER A . n A 1 98 LYS 98 424 424 LYS LYS A . n A 1 99 ASN 99 425 425 ASN ASN A . n A 1 100 HIS 100 426 426 HIS HIS A . n A 1 101 THR 101 427 427 THR THR A . n A 1 102 ASP 102 428 428 ASP ASP A . n A 1 103 PHE 103 429 429 PHE PHE A . n A 1 104 LYS 104 430 430 LYS LYS A . n A 1 105 ILE 105 431 431 ILE ILE A . n A 1 106 THR 106 432 432 THR THR A . n A 1 107 TYR 107 433 433 TYR TYR A . n A 1 108 ASP 108 434 434 ASP ASP A . n A 1 109 ILE 109 435 435 ILE ILE A . n A 1 110 TYR 110 436 436 TYR TYR A . n A 1 111 ALA 111 437 437 ALA ALA A . n A 1 112 THR 112 438 438 THR THR A . n A 1 113 PRO 113 439 439 PRO PRO A . n A 1 114 VAL 114 440 440 VAL VAL A . n A 1 115 LEU 115 441 441 LEU LEU A . n A 1 116 TYR 116 442 442 TYR TYR A . n A 1 117 VAL 117 443 443 VAL VAL A . n A 1 118 LEU 118 444 444 LEU LEU A . n A 1 119 ASP 119 445 445 ASP ASP A . n A 1 120 LYS 120 446 446 LYS LYS A . n A 1 121 ASN 121 447 447 ASN ASN A . n A 1 122 LYS 122 448 448 LYS LYS A . n A 1 123 VAL 123 449 449 VAL VAL A . n A 1 124 ILE 124 450 450 ILE ILE A . n A 1 125 ILE 125 451 451 ILE ILE A . n A 1 126 ALA 126 452 452 ALA ALA A . n A 1 127 LYS 127 453 453 LYS LYS A . n A 1 128 ARG 128 454 454 ARG ARG A . n A 1 129 ILE 129 455 455 ILE ILE A . n A 1 130 GLY 130 456 456 GLY GLY A . n A 1 131 TYR 131 457 457 TYR TYR A . n A 1 132 GLU 132 458 458 GLU GLU A . n A 1 133 ASN 133 459 459 ASN ASN A . n A 1 134 LEU 134 460 460 LEU LEU A . n A 1 135 ASP 135 461 461 ASP ASP A . n A 1 136 ASP 136 462 462 ASP ASP A . n A 1 137 PHE 137 463 463 PHE PHE A . n A 1 138 LEU 138 464 464 LEU LEU A . n A 1 139 VAL 139 465 465 VAL VAL A . n A 1 140 GLN 140 466 466 GLN GLN A . n A 1 141 TYR 141 467 467 TYR TYR A . n A 1 142 GLU 142 468 468 GLU GLU A . n A 1 143 LYS 143 469 469 LYS LYS A . n A 1 144 SER 144 470 470 SER SER A . n A 1 145 LEU 145 471 471 LEU LEU A . n A 1 146 LYS 146 472 472 LYS LYS A . n A 1 147 THR 147 473 473 THR THR A . n A 1 148 LYS 148 474 474 LYS LYS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 16 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 342 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2850 ? 2 MORE -134 ? 2 'SSA (A^2)' 15720 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 63.0360000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.7280 _pdbx_refine_tls.origin_y -4.8780 _pdbx_refine_tls.origin_z 15.2150 _pdbx_refine_tls.T[1][1] 0.0549 _pdbx_refine_tls.T[2][2] 0.0337 _pdbx_refine_tls.T[3][3] 0.1655 _pdbx_refine_tls.T[1][2] 0.0381 _pdbx_refine_tls.T[1][3] -0.0050 _pdbx_refine_tls.T[2][3] 0.0113 _pdbx_refine_tls.L[1][1] 2.2029 _pdbx_refine_tls.L[2][2] 2.9573 _pdbx_refine_tls.L[3][3] 2.2510 _pdbx_refine_tls.L[1][2] 1.4389 _pdbx_refine_tls.L[1][3] -0.0937 _pdbx_refine_tls.L[2][3] -0.2937 _pdbx_refine_tls.S[1][1] 0.0087 _pdbx_refine_tls.S[1][2] 0.0727 _pdbx_refine_tls.S[1][3] 0.1175 _pdbx_refine_tls.S[2][1] -0.1291 _pdbx_refine_tls.S[2][2] 0.0074 _pdbx_refine_tls.S[2][3] 0.0617 _pdbx_refine_tls.S[3][1] -0.0634 _pdbx_refine_tls.S[3][2] 0.0038 _pdbx_refine_tls.S[3][3] -0.0161 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 328 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 473 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELXD phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP 'model building' . ? 5 WARP 'model building' . ? 6 HKL-3000 phasing . ? 7 REFMAC refinement 5.5.0054 ? 8 HKL-3000 'data reduction' . ? 9 HKL-3000 'data scaling' . ? 10 DM phasing . ? 11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 341 ? ? -106.31 55.85 2 1 TYR A 436 ? ? -110.59 -94.28 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 327 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'FORMIC ACID' FMT 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 2 2 SO4 SO4 A . D 2 SO4 1 3 3 SO4 SO4 A . E 2 SO4 1 4 4 SO4 SO4 A . F 2 SO4 1 5 5 SO4 SO4 A . G 3 FMT 1 475 1 FMT FMT A . H 4 HOH 1 6 6 HOH HOH A . H 4 HOH 2 7 7 HOH HOH A . H 4 HOH 3 8 8 HOH HOH A . H 4 HOH 4 9 9 HOH HOH A . H 4 HOH 5 10 10 HOH HOH A . H 4 HOH 6 11 11 HOH HOH A . H 4 HOH 7 12 12 HOH HOH A . H 4 HOH 8 13 13 HOH HOH A . H 4 HOH 9 14 14 HOH HOH A . H 4 HOH 10 15 15 HOH HOH A . H 4 HOH 11 16 16 HOH HOH A . H 4 HOH 12 17 17 HOH HOH A . H 4 HOH 13 18 18 HOH HOH A . H 4 HOH 14 19 19 HOH HOH A . H 4 HOH 15 20 20 HOH HOH A . H 4 HOH 16 21 21 HOH HOH A . H 4 HOH 17 22 22 HOH HOH A . H 4 HOH 18 23 23 HOH HOH A . H 4 HOH 19 24 24 HOH HOH A . H 4 HOH 20 25 25 HOH HOH A . H 4 HOH 21 26 26 HOH HOH A . H 4 HOH 22 27 27 HOH HOH A . H 4 HOH 23 28 28 HOH HOH A . H 4 HOH 24 29 29 HOH HOH A . H 4 HOH 25 30 30 HOH HOH A . H 4 HOH 26 31 31 HOH HOH A . H 4 HOH 27 32 32 HOH HOH A . H 4 HOH 28 33 33 HOH HOH A . H 4 HOH 29 34 34 HOH HOH A . H 4 HOH 30 35 35 HOH HOH A . H 4 HOH 31 36 36 HOH HOH A . H 4 HOH 32 37 37 HOH HOH A . H 4 HOH 33 38 38 HOH HOH A . H 4 HOH 34 39 39 HOH HOH A . H 4 HOH 35 40 40 HOH HOH A . H 4 HOH 36 41 41 HOH HOH A . H 4 HOH 37 42 42 HOH HOH A . H 4 HOH 38 43 43 HOH HOH A . H 4 HOH 39 44 44 HOH HOH A . H 4 HOH 40 45 45 HOH HOH A . H 4 HOH 41 46 46 HOH HOH A . H 4 HOH 42 47 47 HOH HOH A . H 4 HOH 43 48 48 HOH HOH A . H 4 HOH 44 49 49 HOH HOH A . H 4 HOH 45 50 50 HOH HOH A . H 4 HOH 46 51 51 HOH HOH A . H 4 HOH 47 52 52 HOH HOH A . H 4 HOH 48 53 53 HOH HOH A . H 4 HOH 49 54 54 HOH HOH A . H 4 HOH 50 55 55 HOH HOH A . H 4 HOH 51 56 56 HOH HOH A . H 4 HOH 52 57 57 HOH HOH A . H 4 HOH 53 58 58 HOH HOH A . H 4 HOH 54 59 59 HOH HOH A . H 4 HOH 55 60 60 HOH HOH A . H 4 HOH 56 61 61 HOH HOH A . H 4 HOH 57 62 62 HOH HOH A . H 4 HOH 58 63 63 HOH HOH A . H 4 HOH 59 64 64 HOH HOH A . H 4 HOH 60 65 65 HOH HOH A . H 4 HOH 61 66 66 HOH HOH A . H 4 HOH 62 67 67 HOH HOH A . H 4 HOH 63 68 68 HOH HOH A . H 4 HOH 64 69 69 HOH HOH A . H 4 HOH 65 70 70 HOH HOH A . H 4 HOH 66 71 71 HOH HOH A . H 4 HOH 67 72 72 HOH HOH A . H 4 HOH 68 73 73 HOH HOH A . H 4 HOH 69 74 74 HOH HOH A . H 4 HOH 70 75 75 HOH HOH A . H 4 HOH 71 76 76 HOH HOH A . H 4 HOH 72 77 77 HOH HOH A . H 4 HOH 73 78 78 HOH HOH A . H 4 HOH 74 79 79 HOH HOH A . H 4 HOH 75 80 80 HOH HOH A . H 4 HOH 76 81 81 HOH HOH A . H 4 HOH 77 82 82 HOH HOH A . H 4 HOH 78 83 83 HOH HOH A . H 4 HOH 79 84 84 HOH HOH A . H 4 HOH 80 85 85 HOH HOH A . H 4 HOH 81 86 86 HOH HOH A . H 4 HOH 82 87 87 HOH HOH A . H 4 HOH 83 88 88 HOH HOH A . H 4 HOH 84 89 89 HOH HOH A . H 4 HOH 85 90 90 HOH HOH A . H 4 HOH 86 91 91 HOH HOH A . H 4 HOH 87 92 92 HOH HOH A . H 4 HOH 88 93 93 HOH HOH A . H 4 HOH 89 94 94 HOH HOH A . H 4 HOH 90 95 95 HOH HOH A . H 4 HOH 91 96 96 HOH HOH A . H 4 HOH 92 97 97 HOH HOH A . H 4 HOH 93 98 98 HOH HOH A . H 4 HOH 94 99 99 HOH HOH A . H 4 HOH 95 100 100 HOH HOH A . H 4 HOH 96 101 101 HOH HOH A . H 4 HOH 97 102 102 HOH HOH A . H 4 HOH 98 103 103 HOH HOH A . H 4 HOH 99 104 104 HOH HOH A . H 4 HOH 100 105 105 HOH HOH A . H 4 HOH 101 106 106 HOH HOH A . H 4 HOH 102 107 107 HOH HOH A . H 4 HOH 103 108 108 HOH HOH A . H 4 HOH 104 109 109 HOH HOH A . H 4 HOH 105 110 110 HOH HOH A . H 4 HOH 106 111 111 HOH HOH A . H 4 HOH 107 112 112 HOH HOH A . H 4 HOH 108 113 113 HOH HOH A . H 4 HOH 109 114 114 HOH HOH A . H 4 HOH 110 115 115 HOH HOH A . H 4 HOH 111 116 116 HOH HOH A . H 4 HOH 112 117 117 HOH HOH A . H 4 HOH 113 118 118 HOH HOH A . H 4 HOH 114 119 119 HOH HOH A . H 4 HOH 115 120 120 HOH HOH A . H 4 HOH 116 121 121 HOH HOH A . H 4 HOH 117 122 122 HOH HOH A . H 4 HOH 118 123 123 HOH HOH A . H 4 HOH 119 124 124 HOH HOH A . H 4 HOH 120 476 1 HOH HOH A . H 4 HOH 121 477 2 HOH HOH A . H 4 HOH 122 478 3 HOH HOH A . H 4 HOH 123 479 4 HOH HOH A . H 4 HOH 124 480 5 HOH HOH A . #