HEADER HYDROLASE 06-MAY-09 3HD3 TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF CRUZAIN BOUND TO THE VINYL TITLE 2 SULFONE INHIBITOR SMDC-256047 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRUZIPAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CRUZAIN MATURE DOMAIN; COMPND 5 SYNONYM: CRUZAINE, MAJOR CYSTEINE PROTEINASE; COMPND 6 EC: 3.4.22.51; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: CRUZAIN; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAB KEYWDS CYSTEINE PROTEASE, AUTOCATALYTIC CLEAVAGE, DISULFIDE BOND, KEYWDS 2 GLYCOPROTEIN, HYDROLASE, PROTEASE, THIOL PROTEASE, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR I.D.KERR,M.DEBNATH,L.S.BRINEN REVDAT 5 06-NOV-24 3HD3 1 REMARK REVDAT 4 13-OCT-21 3HD3 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3HD3 1 VERSN REVDAT 2 27-OCT-09 3HD3 1 JRNL REVDAT 1 06-OCT-09 3HD3 0 JRNL AUTH C.BRYANT,I.D.KERR,M.DEBNATH,K.K.ANG,J.RATNAM,R.S.FERREIRA, JRNL AUTH 2 P.JAISHANKAR,D.ZHAO,M.R.ARKIN,J.H.MCKERROW,L.S.BRINEN, JRNL AUTH 3 A.R.RENSLO JRNL TITL NOVEL NON-PEPTIDIC VINYLSULFONES TARGETING THE S2 AND S3 JRNL TITL 2 SUBSITES OF PARASITE CYSTEINE PROTEASES. JRNL REF BIOORG.MED.CHEM.LETT. V. 19 6218 2009 JRNL REFN ISSN 0960-894X JRNL PMID 19773167 JRNL DOI 10.1016/J.BMCL.2009.08.098 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 36240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.1630 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 395 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 11.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 4.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3362 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2120 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4593 ; 1.588 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5176 ; 0.976 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 6.137 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;38.640 ;25.735 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;10.268 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.450 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3812 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2117 ; 0.864 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 889 ; 0.284 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3379 ; 1.355 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1245 ; 2.238 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1213 ; 3.515 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3830 -0.1060 3.5400 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0033 REMARK 3 T33: 0.0574 T12: -0.0013 REMARK 3 T13: -0.0134 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.8126 L22: 0.6087 REMARK 3 L33: 0.2547 L12: 0.3509 REMARK 3 L13: -0.0678 L23: -0.0412 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0327 S13: 0.0020 REMARK 3 S21: 0.0206 S22: -0.0203 S23: 0.0073 REMARK 3 S31: -0.0058 S32: 0.0098 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 215 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9050 -10.8190 33.1340 REMARK 3 T TENSOR REMARK 3 T11: 0.0027 T22: 0.0123 REMARK 3 T33: 0.0551 T12: -0.0009 REMARK 3 T13: -0.0063 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4248 L22: 0.8271 REMARK 3 L33: 1.1296 L12: 0.3889 REMARK 3 L13: 0.3737 L23: 0.5403 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.0222 S13: -0.0044 REMARK 3 S21: -0.0034 S22: 0.0405 S23: 0.0094 REMARK 3 S31: -0.0217 S32: 0.0899 S33: -0.0210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL (SI111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING). REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38177 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 72.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.13700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM HEPES PH 7.5, 2% PEG 400, REMARK 280 2.0M AMMONIUM SULFATE, 30% ETHANOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.24650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 22 CB CYS A 22 SG -0.108 REMARK 500 GLU A 117 CG GLU A 117 CD 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 22.61 -141.43 REMARK 500 THR A 185 167.90 70.38 REMARK 500 GLU B 158 -51.74 -126.97 REMARK 500 THR B 185 167.31 68.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 25B A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 25B B 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 218 DBREF 3HD3 A 1 215 UNP P25779 CYSP_TRYCR 123 337 DBREF 3HD3 B 1 215 UNP P25779 CYSP_TRYCR 123 337 SEQADV 3HD3 ALA A 49 UNP P25779 SER 171 ENGINEERED MUTATION SEQADV 3HD3 GLY A 172 UNP P25779 SER 294 ENGINEERED MUTATION SEQADV 3HD3 ALA B 49 UNP P25779 SER 171 ENGINEERED MUTATION SEQADV 3HD3 GLY B 172 UNP P25779 SER 294 ENGINEERED MUTATION SEQRES 1 A 215 ALA PRO ALA ALA VAL ASP TRP ARG ALA ARG GLY ALA VAL SEQRES 2 A 215 THR ALA VAL LYS ASP GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 A 215 ALA PHE SER ALA ILE GLY ASN VAL GLU CYS GLN TRP PHE SEQRES 4 A 215 LEU ALA GLY HIS PRO LEU THR ASN LEU ALA GLU GLN MET SEQRES 5 A 215 LEU VAL SER CYS ASP LYS THR ASP SER GLY CYS SER GLY SEQRES 6 A 215 GLY LEU MET ASN ASN ALA PHE GLU TRP ILE VAL GLN GLU SEQRES 7 A 215 ASN ASN GLY ALA VAL TYR THR GLU ASP SER TYR PRO TYR SEQRES 8 A 215 ALA SER GLY GLU GLY ILE SER PRO PRO CYS THR THR SER SEQRES 9 A 215 GLY HIS THR VAL GLY ALA THR ILE THR GLY HIS VAL GLU SEQRES 10 A 215 LEU PRO GLN ASP GLU ALA GLN ILE ALA ALA TRP LEU ALA SEQRES 11 A 215 VAL ASN GLY PRO VAL ALA VAL ALA VAL ASP ALA SER SER SEQRES 12 A 215 TRP MET THR TYR THR GLY GLY VAL MET THR SER CYS VAL SEQRES 13 A 215 SER GLU GLN LEU ASP HIS GLY VAL LEU LEU VAL GLY TYR SEQRES 14 A 215 ASN ASP GLY ALA ALA VAL PRO TYR TRP ILE ILE LYS ASN SEQRES 15 A 215 SER TRP THR THR GLN TRP GLY GLU GLU GLY TYR ILE ARG SEQRES 16 A 215 ILE ALA LYS GLY SER ASN GLN CYS LEU VAL LYS GLU GLU SEQRES 17 A 215 ALA SER SER ALA VAL VAL GLY SEQRES 1 B 215 ALA PRO ALA ALA VAL ASP TRP ARG ALA ARG GLY ALA VAL SEQRES 2 B 215 THR ALA VAL LYS ASP GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 B 215 ALA PHE SER ALA ILE GLY ASN VAL GLU CYS GLN TRP PHE SEQRES 4 B 215 LEU ALA GLY HIS PRO LEU THR ASN LEU ALA GLU GLN MET SEQRES 5 B 215 LEU VAL SER CYS ASP LYS THR ASP SER GLY CYS SER GLY SEQRES 6 B 215 GLY LEU MET ASN ASN ALA PHE GLU TRP ILE VAL GLN GLU SEQRES 7 B 215 ASN ASN GLY ALA VAL TYR THR GLU ASP SER TYR PRO TYR SEQRES 8 B 215 ALA SER GLY GLU GLY ILE SER PRO PRO CYS THR THR SER SEQRES 9 B 215 GLY HIS THR VAL GLY ALA THR ILE THR GLY HIS VAL GLU SEQRES 10 B 215 LEU PRO GLN ASP GLU ALA GLN ILE ALA ALA TRP LEU ALA SEQRES 11 B 215 VAL ASN GLY PRO VAL ALA VAL ALA VAL ASP ALA SER SER SEQRES 12 B 215 TRP MET THR TYR THR GLY GLY VAL MET THR SER CYS VAL SEQRES 13 B 215 SER GLU GLN LEU ASP HIS GLY VAL LEU LEU VAL GLY TYR SEQRES 14 B 215 ASN ASP GLY ALA ALA VAL PRO TYR TRP ILE ILE LYS ASN SEQRES 15 B 215 SER TRP THR THR GLN TRP GLY GLU GLU GLY TYR ILE ARG SEQRES 16 B 215 ILE ALA LYS GLY SER ASN GLN CYS LEU VAL LYS GLU GLU SEQRES 17 B 215 ALA SER SER ALA VAL VAL GLY HET 25B A 216 34 HET EDO A 217 4 HET EOH A 218 3 HET PEG A 219 7 HET SO4 A 220 5 HET 25B B 216 34 HET EDO B 217 4 HET PEG B 218 7 HETNAM 25B (1R,2R)-2-[(4-CHLOROPHENYL)CARBONYL]-N-{(1S)-1-[2- HETNAM 2 25B (PHENYLSULFONYL)ETHYL]PENTYL}CYCLOHEXANECARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM EOH ETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN 25B (1R,2R)-2-(4-CHLOROBENZOYL)-N-((S,E)-1- HETSYN 2 25B (PHENYLSULFONYL)HEPT-1-EN-3-YL)CYCLOHEXANECARBOXAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 25B 2(C27 H34 CL N O4 S) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 EOH C2 H6 O FORMUL 6 PEG 2(C4 H10 O3) FORMUL 7 SO4 O4 S 2- FORMUL 11 HOH *395(H2 O) HELIX 1 1 ARG A 8 GLY A 11 5 4 HELIX 2 2 SER A 24 ALA A 41 1 18 HELIX 3 3 ALA A 49 ASP A 57 1 9 HELIX 4 4 SER A 61 GLY A 65 5 5 HELIX 5 5 LEU A 67 ASN A 80 1 14 HELIX 6 6 ASP A 121 GLY A 133 1 13 HELIX 7 7 ASN A 201 VAL A 205 5 5 HELIX 8 8 ARG B 8 GLY B 11 5 4 HELIX 9 9 SER B 24 ALA B 41 1 18 HELIX 10 10 ALA B 49 ASP B 57 1 9 HELIX 11 11 SER B 61 GLY B 65 5 5 HELIX 12 12 LEU B 67 ASN B 79 1 13 HELIX 13 13 ALA B 92 GLY B 96 5 5 HELIX 14 14 ASP B 121 GLY B 133 1 13 HELIX 15 15 ASN B 201 VAL B 205 5 5 SHEET 1 A 5 ALA A 4 ASP A 6 0 SHEET 2 A 5 HIS A 162 ASN A 170 -1 O TYR A 169 N VAL A 5 SHEET 3 A 5 VAL A 135 VAL A 139 -1 N VAL A 135 O LEU A 166 SHEET 4 A 5 ALA A 209 VAL A 213 -1 O SER A 210 N ALA A 136 SHEET 5 A 5 GLY A 114 GLU A 117 -1 N VAL A 116 O SER A 211 SHEET 1 B 5 ALA A 4 ASP A 6 0 SHEET 2 B 5 HIS A 162 ASN A 170 -1 O TYR A 169 N VAL A 5 SHEET 3 B 5 TYR A 177 LYS A 181 -1 O ILE A 179 N VAL A 167 SHEET 4 B 5 TYR A 193 ALA A 197 -1 O ILE A 194 N ILE A 180 SHEET 5 B 5 VAL A 151 MET A 152 1 N MET A 152 O ARG A 195 SHEET 1 C 2 ALA A 82 TYR A 84 0 SHEET 2 C 2 VAL A 108 THR A 111 -1 O GLY A 109 N VAL A 83 SHEET 1 D 5 ALA B 4 ASP B 6 0 SHEET 2 D 5 HIS B 162 ASN B 170 -1 O TYR B 169 N VAL B 5 SHEET 3 D 5 VAL B 135 VAL B 139 -1 N VAL B 135 O LEU B 166 SHEET 4 D 5 ALA B 209 VAL B 213 -1 O SER B 210 N ALA B 136 SHEET 5 D 5 GLY B 114 GLU B 117 -1 N VAL B 116 O SER B 211 SHEET 1 E 5 ALA B 4 ASP B 6 0 SHEET 2 E 5 HIS B 162 ASN B 170 -1 O TYR B 169 N VAL B 5 SHEET 3 E 5 TYR B 177 LYS B 181 -1 O ILE B 179 N VAL B 167 SHEET 4 E 5 TYR B 193 ALA B 197 -1 O ILE B 196 N TRP B 178 SHEET 5 E 5 VAL B 151 MET B 152 1 N MET B 152 O ALA B 197 SHEET 1 F 2 ALA B 82 TYR B 84 0 SHEET 2 F 2 VAL B 108 THR B 111 -1 O GLY B 109 N VAL B 83 SSBOND 1 CYS A 22 CYS A 63 1555 1555 2.08 SSBOND 2 CYS A 56 CYS A 101 1555 1555 2.04 SSBOND 3 CYS A 155 CYS A 203 1555 1555 2.06 SSBOND 4 CYS B 22 CYS B 63 1555 1555 2.02 SSBOND 5 CYS B 56 CYS B 101 1555 1555 2.08 SSBOND 6 CYS B 155 CYS B 203 1555 1555 2.06 LINK SG CYS A 25 C10 25B A 216 1555 1555 1.87 LINK SG CYS B 25 C10 25B B 216 1555 1555 1.86 SITE 1 AC1 15 GLN A 19 GLY A 23 CYS A 25 TRP A 26 SITE 2 AC1 15 SER A 61 SER A 64 GLY A 65 GLY A 66 SITE 3 AC1 15 MET A 145 ASP A 161 HIS A 162 TRP A 184 SITE 4 AC1 15 PEG A 219 ALA B 3 HOH B 374 SITE 1 AC2 6 VAL A 54 SER A 55 LYS A 58 SER A 98 SITE 2 AC2 6 PRO A 99 HOH A 375 SITE 1 AC3 2 ASP A 18 GLY A 20 SITE 1 AC4 2 TRP A 184 25B A 216 SITE 1 AC5 6 CYS A 101 THR A 102 THR A 103 SER A 104 SITE 2 AC5 6 THR A 146 HOH A 291 SITE 1 AC6 15 ALA A 4 ARG A 10 GLN B 19 GLY B 23 SITE 2 AC6 15 CYS B 25 TRP B 26 SER B 64 GLY B 65 SITE 3 AC6 15 GLY B 66 LEU B 67 MET B 145 ASP B 161 SITE 4 AC6 15 HIS B 162 TRP B 184 PEG B 218 SITE 1 AC7 4 ASP B 18 GLY B 20 PEG B 218 HOH B 363 SITE 1 AC8 4 TRP B 184 25B B 216 EDO B 217 HOH B 334 CRYST1 44.687 72.493 60.930 90.00 89.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022378 0.000000 -0.000080 0.00000 SCALE2 0.000000 0.013794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016412 0.00000