HEADER VIRAL PROTEIN 06-MAY-09 3HD4 TITLE MHV NUCLEOCAPSID PROTEIN NTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 60-197); COMPND 5 SYNONYM: NUCLEOCAPSID PROTEIN, PROTEIN N, NC; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE HEPATITIS VIRUS; SOURCE 3 ORGANISM_COMMON: MHV-A59; SOURCE 4 ORGANISM_TAXID: 11142; SOURCE 5 STRAIN: A59; SOURCE 6 GENE: N, 7A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS KEYWDS BETA PLATFORM BETA HAIRPIN, GOLGI APPARATUS, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 2 RIBONUCLEOPROTEIN, RNA-BINDING, TRANSCRIPTION, TRANSCRIPTION KEYWDS 3 REGULATION, VIRAL NUCLEOPROTEIN, VIRION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.P.GIEDROC,S.C.KEANE,C.E.DANN III REVDAT 3 21-FEB-24 3HD4 1 SEQADV SHEET REVDAT 2 13-JUL-11 3HD4 1 VERSN REVDAT 1 17-NOV-09 3HD4 0 JRNL AUTH N.E.GROSSOEHME,L.LI,S.C.KEANE,P.LIU,C.E.DANN III, JRNL AUTH 2 J.L.LEIBOWITZ,D.P.GIEDROC JRNL TITL CORONAVIRUS N PROTEIN N-TERMINAL DOMAIN (NTD) SPECIFICALLY JRNL TITL 2 BINDS THE TRANSCRIPTIONAL REGULATORY SEQUENCE (TRS) AND JRNL TITL 3 MELTS TRS-CTRS RNA DUPLEXES. JRNL REF J.MOL.BIOL. V. 394 544 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19782089 JRNL DOI 10.1016/J.JMB.2009.09.040 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.2750 - 3.4910 1.00 1491 149 0.1600 0.1940 REMARK 3 2 3.4910 - 2.7730 1.00 1403 131 0.1770 0.2030 REMARK 3 3 2.7730 - 2.4220 1.00 1369 144 0.1860 0.2350 REMARK 3 4 2.4220 - 2.2010 1.00 1399 123 0.1790 0.2360 REMARK 3 5 2.2010 - 2.0440 1.00 1356 140 0.1770 0.2220 REMARK 3 6 2.0440 - 1.9230 1.00 1345 139 0.1940 0.2440 REMARK 3 7 1.9230 - 1.8270 0.99 1379 122 0.2090 0.2520 REMARK 3 8 1.8270 - 1.7470 0.97 1313 130 0.2190 0.2780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 41.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.50900 REMARK 3 B22 (A**2) : 0.19800 REMARK 3 B33 (A**2) : -1.70700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1084 REMARK 3 ANGLE : 1.087 1474 REMARK 3 CHIRALITY : 0.076 139 REMARK 3 PLANARITY : 0.005 197 REMARK 3 DIHEDRAL : 15.992 374 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 64:70) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8741 -9.8314 12.0772 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.2088 REMARK 3 T33: 0.2035 T12: -0.0256 REMARK 3 T13: 0.0222 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: -0.8872 L22: -0.1701 REMARK 3 L33: 1.5692 L12: 1.5633 REMARK 3 L13: 0.5919 L23: -0.6636 REMARK 3 S TENSOR REMARK 3 S11: 0.1916 S12: 0.0262 S13: 0.1273 REMARK 3 S21: 0.0308 S22: -0.0352 S23: 0.1981 REMARK 3 S31: 0.1465 S32: -0.1642 S33: -0.1372 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 71:99) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2641 -3.3105 7.1865 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1542 REMARK 3 T33: 0.1993 T12: -0.0203 REMARK 3 T13: -0.0175 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.3646 L22: 0.1712 REMARK 3 L33: 0.5664 L12: -0.3842 REMARK 3 L13: -0.7523 L23: 0.0794 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.0138 S13: 0.0930 REMARK 3 S21: -0.0152 S22: 0.0755 S23: -0.0567 REMARK 3 S31: -0.1145 S32: 0.2044 S33: -0.0731 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 100:108) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7999 -1.1406 11.7004 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1679 REMARK 3 T33: 0.1665 T12: 0.0160 REMARK 3 T13: 0.0121 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.4828 L22: 1.0385 REMARK 3 L33: 4.9410 L12: 0.6411 REMARK 3 L13: -1.0972 L23: -0.1429 REMARK 3 S TENSOR REMARK 3 S11: 0.0741 S12: -0.2088 S13: -0.0487 REMARK 3 S21: 0.1097 S22: -0.0818 S23: 0.0507 REMARK 3 S31: -0.2542 S32: 0.5525 S33: 0.0703 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 109:118) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5885 -8.5529 33.6061 REMARK 3 T TENSOR REMARK 3 T11: 0.5189 T22: 0.5860 REMARK 3 T33: 0.4998 T12: 0.0223 REMARK 3 T13: 0.0305 T23: 0.1854 REMARK 3 L TENSOR REMARK 3 L11: 6.9432 L22: 5.2366 REMARK 3 L33: -0.9327 L12: -0.7022 REMARK 3 L13: 3.0151 L23: 7.9660 REMARK 3 S TENSOR REMARK 3 S11: -0.2511 S12: -1.5400 S13: 0.2854 REMARK 3 S21: -0.1273 S22: -0.1344 S23: -0.5151 REMARK 3 S31: -0.9890 S32: -0.0705 S33: 0.0275 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 119:127) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7248 -4.8593 23.5146 REMARK 3 T TENSOR REMARK 3 T11: 0.2556 T22: 0.3572 REMARK 3 T33: 0.1699 T12: 0.0099 REMARK 3 T13: 0.0368 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4847 L22: -0.6922 REMARK 3 L33: 1.2440 L12: 0.1006 REMARK 3 L13: -0.4743 L23: 1.8755 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.5523 S13: -0.0498 REMARK 3 S21: 0.2067 S22: 0.1678 S23: 0.1967 REMARK 3 S31: 0.4727 S32: 0.1605 S33: -0.2129 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 128:160) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8685 2.7917 5.4754 REMARK 3 T TENSOR REMARK 3 T11: 0.1520 T22: 0.1626 REMARK 3 T33: 0.1770 T12: 0.0225 REMARK 3 T13: 0.0025 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.4696 L22: 1.6290 REMARK 3 L33: 1.5935 L12: -0.4577 REMARK 3 L13: 1.0367 L23: -0.0930 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.0205 S13: 0.0763 REMARK 3 S21: -0.0408 S22: -0.0101 S23: 0.1499 REMARK 3 S31: -0.1726 S32: -0.1007 S33: 0.0352 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 161:172) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4927 -10.6117 6.5000 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.2027 REMARK 3 T33: 0.2309 T12: -0.0097 REMARK 3 T13: -0.0059 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.1883 L22: 1.9142 REMARK 3 L33: 0.9467 L12: 0.8344 REMARK 3 L13: 0.0890 L23: -1.5679 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.0195 S13: 0.0970 REMARK 3 S21: -0.0606 S22: 0.2894 S23: 0.4317 REMARK 3 S31: 0.0016 S32: -0.4500 S33: -0.2165 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 173:178) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8402 -15.5466 7.8835 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.1954 REMARK 3 T33: 0.1807 T12: 0.0183 REMARK 3 T13: 0.0082 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 5.8846 L22: 1.6635 REMARK 3 L33: 0.7822 L12: 0.9708 REMARK 3 L13: -2.0331 L23: -0.6504 REMARK 3 S TENSOR REMARK 3 S11: -0.3291 S12: -0.6502 S13: -0.4843 REMARK 3 S21: -0.4247 S22: 0.0478 S23: -0.0321 REMARK 3 S31: 0.1791 S32: 0.1312 S33: 0.2134 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 179:185) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3269 -6.3638 2.3489 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.1781 REMARK 3 T33: 0.1803 T12: -0.0355 REMARK 3 T13: 0.0092 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: -0.0415 L22: 0.0486 REMARK 3 L33: 1.4723 L12: 0.3289 REMARK 3 L13: 0.4431 L23: 0.4425 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: -0.1151 S13: -0.1755 REMARK 3 S21: -0.0047 S22: -0.1501 S23: -0.1844 REMARK 3 S31: 0.0256 S32: 0.0210 S33: 0.0728 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 186:194) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3312 -7.8675 13.6427 REMARK 3 T TENSOR REMARK 3 T11: 0.1904 T22: 0.2767 REMARK 3 T33: 0.2016 T12: 0.0410 REMARK 3 T13: -0.0114 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.5306 L22: -1.7439 REMARK 3 L33: 5.4771 L12: -4.3339 REMARK 3 L13: -0.8806 L23: 1.3225 REMARK 3 S TENSOR REMARK 3 S11: -0.1631 S12: 0.0758 S13: -0.2395 REMARK 3 S21: -0.0135 S22: 0.1301 S23: -0.3512 REMARK 3 S31: 0.5150 S32: 0.5068 S33: -0.0481 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 113.0 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 22.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 1000, 50MM CAPSO, PH 9.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.08000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.85300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.43200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.85300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.08000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.43200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 59 REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 VAL A 62 REMARK 465 VAL A 63 REMARK 465 GLY A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 113 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 3HD4 A 60 197 UNP P03416 NCAP_CVMA5 60 197 SEQADV 3HD4 MET A 59 UNP P03416 INITIATING METHIONINE SEQRES 1 A 139 MET GLY SER VAL VAL PRO HIS TYR SER TRP PHE SER GLY SEQRES 2 A 139 ILE THR GLN PHE GLN LYS GLY LYS GLU PHE GLN PHE ALA SEQRES 3 A 139 GLU GLY GLN GLY VAL PRO ILE ALA ASN GLY ILE PRO ALA SEQRES 4 A 139 SER GLU GLN LYS GLY TYR TRP TYR ARG HIS ASN ARG ARG SEQRES 5 A 139 SER PHE LYS THR PRO ASP GLY GLN GLN LYS GLN LEU LEU SEQRES 6 A 139 PRO ARG TRP TYR PHE TYR TYR LEU GLY THR GLY PRO HIS SEQRES 7 A 139 ALA GLY ALA SER TYR GLY ASP SER ILE GLU GLY VAL PHE SEQRES 8 A 139 TRP VAL ALA ASN SER GLN ALA ASP THR ASN THR ARG SER SEQRES 9 A 139 ASP ILE VAL GLU ARG ASP PRO SER SER HIS GLU ALA ILE SEQRES 10 A 139 PRO THR ARG PHE ALA PRO GLY THR VAL LEU PRO GLN GLY SEQRES 11 A 139 PHE TYR VAL GLU GLY SER GLY ARG SER FORMUL 2 HOH *121(H2 O) HELIX 1 1 PRO A 96 GLU A 99 5 4 SHEET 1 A 5 VAL A 148 ALA A 152 0 SHEET 2 A 5 LYS A 101 HIS A 107 -1 N TRP A 104 O PHE A 149 SHEET 3 A 5 ARG A 125 TYR A 130 -1 O ARG A 125 N HIS A 107 SHEET 4 A 5 ILE A 72 GLN A 74 -1 N ILE A 72 O TRP A 126 SHEET 5 A 5 PHE A 189 VAL A 191 -1 O TYR A 190 N THR A 73 SHEET 1 B 1 GLN A 119 GLN A 121 0 CRYST1 34.160 46.864 71.706 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029274 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013946 0.00000