HEADER HYDROLASE 07-MAY-09 3HDB TITLE CRYSTAL STRUCTURE OF AAHIV, A METALLOPROTEINASE FROM VENOM OF TITLE 2 AGKISTRODON ACUTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AAHIV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZINC METALLOPROTEINASE; COMPND 5 EC: 3.4.24.-; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: KNL; COMPND 8 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGKISTRODON ACUTUS; SOURCE 3 ORGANISM_COMMON: HUNDRED-PACE SNAKE; SOURCE 4 ORGANISM_TAXID: 36307; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: AGKISTRODON ACUTUS; SOURCE 7 ORGANISM_COMMON: HUNDRED-PACE SNAKE; SOURCE 8 ORGANISM_TAXID: 36307 KEYWDS AAHIV, MDC-DOMAIN, DISINTEGRIN DOMAIN, CYSTEINE-RICH DOMAIN, KEYWDS 2 METALLOPROTEINASE, DISULFIDE BOND, GLYCOPROTEIN, HYDROLASE, METAL- KEYWDS 3 BINDING, METALLOPROTEASE, PROTEASE, SECRETED, TOXIN, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR Z.Q.ZHU,L.W.NIU,M.K.TENG REVDAT 5 09-OCT-24 3HDB 1 REMARK REVDAT 4 01-NOV-23 3HDB 1 HETSYN REVDAT 3 29-JUL-20 3HDB 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 13-JUL-11 3HDB 1 VERSN REVDAT 1 11-AUG-09 3HDB 0 JRNL AUTH Z.ZHU,Y.GAO,Z.ZHU,Y.YU,X.ZHANG,J.ZANG,M.TENG,L.NIU JRNL TITL STRUCTURAL BASIS OF THE AUTOLYSIS OF AAHIV SUGGESTS A NOVEL JRNL TITL 2 TARGET RECOGNIZING MODEL FOR ADAM/REPROLYSIN FAMILY PROTEINS JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 386 159 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19505434 JRNL DOI 10.1016/J.BBRC.2009.06.004 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 25459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3272 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : -0.99000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.293 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3466 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4681 ; 1.111 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 5.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;37.418 ;25.342 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 570 ;14.270 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.832 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2633 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1606 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2317 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 12 ; 0.146 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2166 ; 0.554 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3379 ; 0.900 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1486 ; 1.232 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1300 ; 1.903 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 609 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4920 38.6060 36.5010 REMARK 3 T TENSOR REMARK 3 T11: -0.0836 T22: -0.1032 REMARK 3 T33: -0.0611 T12: 0.0788 REMARK 3 T13: 0.0127 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 0.1425 L22: 0.9644 REMARK 3 L33: 1.1860 L12: -0.1308 REMARK 3 L13: 0.0599 L23: -0.4858 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: -0.0583 S13: 0.0717 REMARK 3 S21: 0.0264 S22: 0.1209 S23: -0.0679 REMARK 3 S31: 0.1262 S32: 0.0599 S33: -0.0030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 620 A 658 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9880 44.7730 32.6710 REMARK 3 T TENSOR REMARK 3 T11: -0.0584 T22: -0.0559 REMARK 3 T33: 0.0420 T12: 0.0423 REMARK 3 T13: 0.0357 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.0216 L22: 0.4594 REMARK 3 L33: 0.9232 L12: 0.0325 REMARK 3 L13: 0.1223 L23: -0.1227 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: -0.0387 S13: 0.0429 REMARK 3 S21: 0.0195 S22: 0.0468 S23: -0.0839 REMARK 3 S31: 0.0236 S32: 0.1004 S33: 0.0212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, THE STRUCTURE WAS REFINED ALSO WITH CNS REMARK 4 REMARK 4 3HDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG400, 80MM CALCIUM CHLORIDE, REMARK 280 0.1M HEPES SODIUM, PH7.5, EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.36050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.36050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.13900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.59500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.13900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.36050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.59500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.13900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.36050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.59500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.13900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.36050 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 308 -17.20 87.07 REMARK 500 CYS A 350 48.96 -145.62 REMARK 500 ASN A 385 72.00 49.44 REMARK 500 ASP A 579 92.13 -161.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 650 REMARK 610 2PE A 651 REMARK 610 2PE A 652 REMARK 610 2PE A 653 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 621 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 200 OE2 REMARK 620 2 ASP A 284 OD1 103.4 REMARK 620 3 ASP A 284 OD2 100.6 48.2 REMARK 620 4 CYS A 388 O 173.5 81.8 79.9 REMARK 620 5 ASN A 391 OD1 95.6 157.7 139.1 80.0 REMARK 620 6 HOH A 701 O 93.0 83.8 131.9 91.3 83.7 REMARK 620 7 HOH A 855 O 88.4 118.6 70.4 85.8 72.9 156.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 657 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 OD1 REMARK 620 2 PHE A 294 O 96.8 REMARK 620 3 GLY A 296 O 171.8 91.2 REMARK 620 4 HOH A 831 O 83.0 95.5 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 620 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 333 NE2 REMARK 620 2 HIS A 337 NE2 92.9 REMARK 620 3 HIS A 343 NE2 95.2 107.8 REMARK 620 4 LEU L 3 O 97.2 165.7 81.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 622 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 403 O REMARK 620 2 ASN A 406 OD1 69.8 REMARK 620 3 LEU A 408 O 154.6 84.9 REMARK 620 4 GLU A 410 OE2 84.3 84.7 91.1 REMARK 620 5 GLU A 413 OE1 134.0 155.9 71.4 99.5 REMARK 620 6 GLU A 413 OE2 81.5 151.3 123.7 91.8 52.7 REMARK 620 7 ASP A 416 OD1 87.3 83.8 92.6 167.6 92.9 96.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 623 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 467 OD1 REMARK 620 2 PRO A 468 O 85.2 REMARK 620 3 GLU A 470 OE1 153.0 94.9 REMARK 620 4 GLU A 470 OE2 152.5 75.9 50.7 REMARK 620 5 ASP A 482 OD1 105.1 169.5 76.9 93.7 REMARK 620 6 VAL A 483 O 79.7 95.2 127.0 82.2 84.8 REMARK 620 7 HOH A 742 O 77.6 85.3 75.4 119.8 98.8 157.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 656 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 558 O REMARK 620 2 PHE A 574 N 115.9 REMARK 620 3 GLY A 583 O 98.5 140.0 REMARK 620 N 1 2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. THIS SEQUENCE WILL BE DEPOSITED IN THE SEQUENCE DATABASE. DBREF 3HDB A 193 609 PDB 3HDB 3HDB 193 609 DBREF 3HDB L 1 3 PDB 3HDB 3HDB 1 3 SEQRES 1 A 417 TYR ASP PRO PHE LYS TYR VAL GLU THR VAL PHE VAL VAL SEQRES 2 A 417 ASP LYS ALA MET VAL THR LYS TYR ASN GLY ASP LEU ASP SEQRES 3 A 417 LYS ILE LYS THR LYS MET TYR GLU ALA ALA ASN ASN MET SEQRES 4 A 417 ASN GLU MET TYR ARG TYR MET PHE PHE ARG VAL VAL MET SEQRES 5 A 417 VAL GLY LEU ILE ILE TRP THR GLU GLU ASP LYS ILE THR SEQRES 6 A 417 VAL LYS PRO ASP VAL ASP TYR THR LEU ASN ALA PHE ALA SEQRES 7 A 417 GLU TRP ARG LYS THR TYR LEU LEU ALA GLU LYS LYS HIS SEQRES 8 A 417 ASP ASN ALA GLN LEU ILE THR GLY ILE ASP PHE ARG GLY SEQRES 9 A 417 SER ILE ILE GLY TYR ALA TYR ILE GLY SER MET CYS HIS SEQRES 10 A 417 PRO LYS ARG SER VAL GLY ILE ILE GLN ASP TYR SER PRO SEQRES 11 A 417 ILE ASN LEU VAL LEU ALA VAL ILE MET ALA HIS GLU MET SEQRES 12 A 417 GLY HIS ASN LEU GLY ILE HIS HIS ASP ASP GLY TYR CYS SEQRES 13 A 417 TYR CYS GLY GLY TYR PRO CYS ILE MET GLY PRO SER ILE SEQRES 14 A 417 SER PRO GLU PRO SER LYS PHE PHE SER ASN CYS SER TYR SEQRES 15 A 417 ILE GLN CYS TRP ASP PHE ILE MET ASN HIS ASN PRO GLU SEQRES 16 A 417 CYS ILE ASP ASN GLU PRO LEU GLY THR ASP ILE ILE SER SEQRES 17 A 417 PRO PRO LEU CYS GLY ASN GLU LEU LEU GLU VAL GLY GLU SEQRES 18 A 417 GLU CYS ASP CYS GLY THR PRO GLU ASN CYS GLN ASN PRO SEQRES 19 A 417 CYS CYS ASP ALA ALA THR CYS LYS LEU LYS SER GLY SER SEQRES 20 A 417 GLN CYS GLY HIS GLY LYS CYS CYS GLU GLN CYS LYS PHE SEQRES 21 A 417 ARG THR SER GLY THR GLU CYS ARG ALA SER MET SER GLU SEQRES 22 A 417 CYS ASP PRO ALA GLU HIS CYS THR GLY GLN SER SER GLU SEQRES 23 A 417 CYS PRO ALA ASP VAL PHE HIS LYS ASN GLY GLU PRO CYS SEQRES 24 A 417 LEU ASP ASN TYR GLY TYR CYS TYR ASN GLY ASN CYS PRO SEQRES 25 A 417 ILE MET TYR HIS GLN CYS TYR ALA LEU PHE GLY ALA ASP SEQRES 26 A 417 ILE TYR GLU ALA GLU ASP SER CYS PHE GLU SER ASN LYS SEQRES 27 A 417 LYS GLY ASN TYR TYR GLY TYR CYS ARG LYS GLU ASN GLY SEQRES 28 A 417 LYS LYS ILE PRO CYS ALA SER GLU ASP VAL LYS CYS GLY SEQRES 29 A 417 ARG LEU TYR CYS LYS ASP ASP SER PRO GLY GLN ASN ASN SEQRES 30 A 417 PRO CYS LYS MET PHE TYR SER ASN ASP ASP GLU HIS LYS SEQRES 31 A 417 GLY MET VAL LEU PRO GLY THR LYS CYS ALA ASP GLY LYS SEQRES 32 A 417 VAL CYS SER ASN GLY HIS CYS VAL ASP VAL THR THR ALA SEQRES 33 A 417 TYR SEQRES 1 L 3 LYS ASN LEU MODRES 3HDB ASN A 371 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET ZN A 620 1 HET CA A 621 1 HET CA A 622 1 HET CA A 623 1 HET 2PE A 650 13 HET 2PE A 651 13 HET 2PE A 652 13 HET 2PE A 653 10 HET CA A 654 1 HET CA A 655 1 HET CA A 656 1 HET CA A 657 1 HET CL A 658 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM 2PE NONAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 ZN ZN 2+ FORMUL 5 CA 7(CA 2+) FORMUL 8 2PE 4(C18 H38 O10) FORMUL 16 CL CL 1- FORMUL 17 HOH *241(H2 O) HELIX 1 1 ASP A 206 TYR A 213 1 8 HELIX 2 2 ASP A 216 TYR A 237 1 22 HELIX 3 3 ASP A 261 TYR A 276 1 16 HELIX 4 4 ILE A 323 LEU A 339 1 17 HELIX 5 5 SER A 370 ASN A 385 1 16 HELIX 6 6 PRO A 386 ASP A 390 5 5 HELIX 7 7 LEU A 394 ILE A 398 5 5 HELIX 8 8 ILE A 505 GLY A 515 1 11 HELIX 9 9 GLU A 522 LYS A 531 5 10 HELIX 10 10 ALA A 549 GLY A 556 5 8 HELIX 11 11 VAL A 605 TYR A 609 1 5 SHEET 1 A 5 PHE A 240 ILE A 249 0 SHEET 2 A 5 LYS A 197 VAL A 205 1 N THR A 201 O VAL A 243 SHEET 3 A 5 ASN A 285 THR A 290 1 O ILE A 289 N VAL A 204 SHEET 4 A 5 VAL A 314 GLN A 318 1 O ILE A 317 N LEU A 288 SHEET 5 A 5 GLY A 300 ALA A 302 -1 N TYR A 301 O ILE A 316 SHEET 1 B 2 CYS A 428 ASP A 429 0 SHEET 2 B 2 LYS A 434 LEU A 435 -1 O LYS A 434 N ASP A 429 SHEET 1 C 2 CYS A 447 GLU A 448 0 SHEET 2 C 2 LYS A 451 PHE A 452 -1 O LYS A 451 N GLU A 448 SHEET 1 D 2 GLU A 458 ARG A 460 0 SHEET 2 D 2 GLU A 470 HIS A 471 -1 O GLU A 470 N CYS A 459 SHEET 1 E 2 PRO A 490 CYS A 491 0 SHEET 2 E 2 GLY A 496 TYR A 497 -1 O GLY A 496 N CYS A 491 SHEET 1 F 3 TYR A 519 GLU A 520 0 SHEET 2 F 3 CYS A 560 ASP A 562 -1 O LYS A 561 N TYR A 519 SHEET 3 F 3 ASN A 569 LYS A 572 -1 O ASN A 569 N ASP A 562 SHEET 1 G 2 ARG A 539 GLU A 541 0 SHEET 2 G 2 LYS A 544 ILE A 546 -1 O ILE A 546 N ARG A 539 SHEET 1 H 3 LYS A 590 ALA A 592 0 SHEET 2 H 3 LYS A 595 SER A 598 -1 O LYS A 595 N CYS A 591 SHEET 3 H 3 HIS A 601 ASP A 604 -1 O VAL A 603 N VAL A 596 SSBOND 1 CYS A 308 CYS A 388 1555 1555 2.04 SSBOND 2 CYS A 348 CYS A 372 1555 1555 2.03 SSBOND 3 CYS A 350 CYS A 355 1555 1555 2.04 SSBOND 4 CYS A 404 CYS A 433 1555 1555 2.04 SSBOND 5 CYS A 415 CYS A 428 1555 1555 2.03 SSBOND 6 CYS A 417 CYS A 423 1555 1555 2.05 SSBOND 7 CYS A 427 CYS A 450 1555 1555 2.04 SSBOND 8 CYS A 441 CYS A 447 1555 1555 2.04 SSBOND 9 CYS A 446 CYS A 472 1555 1555 2.04 SSBOND 10 CYS A 459 CYS A 479 1555 1555 2.04 SSBOND 11 CYS A 466 CYS A 498 1555 1555 2.04 SSBOND 12 CYS A 491 CYS A 503 1555 1555 2.02 SSBOND 13 CYS A 510 CYS A 560 1555 1555 2.04 SSBOND 14 CYS A 525 CYS A 571 1555 1555 2.00 SSBOND 15 CYS A 538 CYS A 548 1555 1555 2.03 SSBOND 16 CYS A 555 CYS A 597 1555 1555 2.04 SSBOND 17 CYS A 591 CYS A 602 1555 1555 2.05 LINK ND2 ASN A 371 C1 NAG B 1 1555 1555 1.36 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK OE2 GLU A 200 CA CA A 621 1555 1555 2.39 LINK OD1 ASP A 284 CA CA A 621 1555 1555 2.50 LINK OD2 ASP A 284 CA CA A 621 1555 1555 2.82 LINK OD1 ASP A 293 CA CA A 657 1555 1555 2.67 LINK O PHE A 294 CA CA A 657 1555 1555 2.46 LINK O GLY A 296 CA CA A 657 1555 1555 2.61 LINK NE2 HIS A 333 ZN ZN A 620 1555 1555 2.25 LINK NE2 HIS A 337 ZN ZN A 620 1555 1555 2.13 LINK NE2 HIS A 343 ZN ZN A 620 1555 1555 2.01 LINK O CYS A 388 CA CA A 621 1555 1555 2.23 LINK OD1 ASN A 391 CA CA A 621 1555 1555 2.46 LINK O LEU A 403 CA CA A 622 1555 1555 2.49 LINK OD1 ASN A 406 CA CA A 622 1555 1555 2.54 LINK O LEU A 408 CA CA A 622 1555 1555 2.39 LINK OE2 GLU A 410 CA CA A 622 1555 1555 2.43 LINK OE1 GLU A 413 CA CA A 622 1555 1555 2.56 LINK OE2 GLU A 413 CA CA A 622 1555 1555 2.33 LINK OD1 ASP A 416 CA CA A 622 1555 1555 2.40 LINK OD1 ASP A 467 CA CA A 623 1555 1555 2.15 LINK O PRO A 468 CA CA A 623 1555 1555 2.32 LINK OE1 GLU A 470 CA CA A 623 1555 1555 2.63 LINK OE2 GLU A 470 CA CA A 623 1555 1555 2.50 LINK OD1 ASP A 482 CA CA A 623 1555 1555 2.24 LINK O VAL A 483 CA CA A 623 1555 1555 2.62 LINK N ASP A 523 CA CA A 655 1555 1555 2.98 LINK O LEU A 558 CA CA A 656 1555 1555 2.74 LINK N PHE A 574 CA CA A 656 1555 1555 2.76 LINK O GLY A 583 CA CA A 656 1555 1555 2.82 LINK ZN ZN A 620 O LEU L 3 1555 1555 2.28 LINK CA CA A 621 O HOH A 701 1555 1555 2.28 LINK CA CA A 621 O HOH A 855 1555 1555 2.17 LINK CA CA A 623 O HOH A 742 1555 1555 2.50 LINK CA CA A 657 O HOH A 831 1555 1555 2.45 CRYST1 111.190 122.278 94.721 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010557 0.00000