HEADER HYDROLASE 07-MAY-09 3HDE TITLE CRYSTAL STRUCTURE OF FULL-LENGTH ENDOLYSIN R21 FROM PHAGE 21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P21; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE 21; SOURCE 4 ORGANISM_TAXID: 10711; SOURCE 5 GENE: R; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETR21 KEYWDS LYSOZYME-LIKE, ANTIMICROBIAL, BACTERIOLYTIC ENZYME, GLYCOSIDASE, KEYWDS 2 HYDROLASE, LATE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.SUN,A.AROCKIASAMY,E.MCKEE,E.CARONNA,J.C.SACCHETTINI REVDAT 3 01-NOV-17 3HDE 1 REMARK REVDAT 2 19-JAN-10 3HDE 1 JRNL REVDAT 1 03-NOV-09 3HDE 0 JRNL AUTH Q.SUN,G.F.KUTY,A.AROCKIASAMY,M.XU,R.YOUNG,J.C.SACCHETTINI JRNL TITL REGULATION OF A MURALYTIC ENZYME BY DYNAMIC MEMBRANE JRNL TITL 2 TOPOLOGY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 1192 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19881499 JRNL DOI 10.1038/NSMB.1681 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 50721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4180 - 8.9640 0.89 562 0 0.1880 0.0000 REMARK 3 2 8.9640 - 7.1250 0.97 566 0 0.1780 0.0000 REMARK 3 3 7.1250 - 6.2280 0.97 565 0 0.2050 0.0000 REMARK 3 4 6.2280 - 5.6600 0.97 549 0 0.2050 0.0000 REMARK 3 5 5.6600 - 5.2550 0.97 551 0 0.2040 0.0000 REMARK 3 6 5.2550 - 4.9450 0.97 548 0 0.1820 0.0000 REMARK 3 7 4.9450 - 4.6980 0.97 549 0 0.1910 0.0000 REMARK 3 8 4.6980 - 4.4940 0.97 541 0 0.1690 0.0000 REMARK 3 9 4.4940 - 4.3210 0.97 541 0 0.2000 0.0000 REMARK 3 10 4.3210 - 4.1720 0.97 546 0 0.1840 0.0000 REMARK 3 11 4.1720 - 4.0420 0.97 538 0 0.1730 0.0000 REMARK 3 12 4.0420 - 3.9260 0.97 530 0 0.1860 0.0000 REMARK 3 13 3.9260 - 3.8230 0.96 544 0 0.1830 0.0000 REMARK 3 14 3.8230 - 3.7300 0.96 523 0 0.1720 0.0000 REMARK 3 15 3.7300 - 3.6450 0.97 546 0 0.1870 0.0000 REMARK 3 16 3.6450 - 3.5670 0.97 533 0 0.1820 0.0000 REMARK 3 17 3.5670 - 3.4960 0.96 529 0 0.2050 0.0000 REMARK 3 18 3.4960 - 3.4300 0.96 545 0 0.2210 0.0000 REMARK 3 19 3.4300 - 3.3690 0.97 543 0 0.2100 0.0000 REMARK 3 20 3.3690 - 3.3120 0.95 517 0 0.2080 0.0000 REMARK 3 21 3.3120 - 3.2580 0.97 522 0 0.2210 0.0000 REMARK 3 22 3.2580 - 3.2080 0.97 548 0 0.2140 0.0000 REMARK 3 23 3.2080 - 3.1610 0.97 518 0 0.2250 0.0000 REMARK 3 24 3.1610 - 3.1160 0.96 539 0 0.2350 0.0000 REMARK 3 25 3.1160 - 3.0740 0.97 521 0 0.2170 0.0000 REMARK 3 26 3.0740 - 3.0340 0.96 540 0 0.2290 0.0000 REMARK 3 27 3.0340 - 2.9970 0.97 526 0 0.2260 0.0000 REMARK 3 28 2.9970 - 2.9610 0.96 512 0 0.2110 0.0000 REMARK 3 29 2.9610 - 2.9260 0.96 537 0 0.2120 0.0000 REMARK 3 30 2.9260 - 2.8930 0.96 517 0 0.2210 0.0000 REMARK 3 31 2.8930 - 2.8620 0.96 540 0 0.2340 0.0000 REMARK 3 32 2.8620 - 2.8320 0.96 531 0 0.2310 0.0000 REMARK 3 33 2.8320 - 2.8030 0.96 489 0 0.2260 0.0000 REMARK 3 34 2.8030 - 2.7750 0.95 540 0 0.2360 0.0000 REMARK 3 35 2.7750 - 2.7480 0.95 526 0 0.2280 0.0000 REMARK 3 36 2.7480 - 2.7230 0.95 503 0 0.2400 0.0000 REMARK 3 37 2.7230 - 2.6980 0.96 527 0 0.2140 0.0000 REMARK 3 38 2.6980 - 2.6740 0.97 532 0 0.2300 0.0000 REMARK 3 39 2.6740 - 2.6510 0.95 529 0 0.2360 0.0000 REMARK 3 40 2.6510 - 2.6290 0.95 509 0 0.2330 0.0000 REMARK 3 41 2.6290 - 2.6070 0.95 518 0 0.2370 0.0000 REMARK 3 42 2.6070 - 2.5860 0.95 530 0 0.2300 0.0000 REMARK 3 43 2.5860 - 2.5660 0.95 484 0 0.2190 0.0000 REMARK 3 44 2.5660 - 2.5460 0.95 542 0 0.2190 0.0000 REMARK 3 45 2.5460 - 2.5270 0.95 505 0 0.2340 0.0000 REMARK 3 46 2.5270 - 2.5090 0.96 516 0 0.2170 0.0000 REMARK 3 47 2.5090 - 2.4910 0.91 514 0 0.2250 0.0000 REMARK 3 48 2.4910 - 2.4740 0.94 509 0 0.2230 0.0000 REMARK 3 49 2.4740 - 2.4570 0.94 496 0 0.2370 0.0000 REMARK 3 50 2.4570 - 2.4400 0.94 499 0 0.2400 0.0000 REMARK 3 51 2.4400 - 2.4240 0.93 520 0 0.2380 0.0000 REMARK 3 52 2.4240 - 2.4090 0.93 509 0 0.2300 0.0000 REMARK 3 53 2.4090 - 2.3930 0.91 508 0 0.2310 0.0000 REMARK 3 54 2.3930 - 2.3780 0.95 506 0 0.2280 0.0000 REMARK 3 55 2.3780 - 2.3640 0.93 495 0 0.2270 0.0000 REMARK 3 56 2.3640 - 2.3500 0.94 536 0 0.2130 0.0000 REMARK 3 57 2.3500 - 2.3360 0.92 484 0 0.2210 0.0000 REMARK 3 58 2.3360 - 2.3220 0.91 489 0 0.2300 0.0000 REMARK 3 59 2.3220 - 2.3090 0.93 489 0 0.2160 0.0000 REMARK 3 60 2.3090 - 2.2960 0.92 530 0 0.2310 0.0000 REMARK 3 61 2.2960 - 2.2840 0.92 486 0 0.2250 0.0000 REMARK 3 62 2.2840 - 2.2720 0.93 494 0 0.2400 0.0000 REMARK 3 63 2.2720 - 2.2590 0.89 501 0 0.2250 0.0000 REMARK 3 64 2.2590 - 2.2480 0.90 475 0 0.2360 0.0000 REMARK 3 65 2.2480 - 2.2360 0.92 487 0 0.2150 0.0000 REMARK 3 66 2.2360 - 2.2250 0.90 499 0 0.2220 0.0000 REMARK 3 67 2.2250 - 2.2140 0.93 503 0 0.2430 0.0000 REMARK 3 68 2.2140 - 2.2030 0.90 485 0 0.2350 0.0000 REMARK 3 69 2.2030 - 2.1920 0.88 478 0 0.2370 0.0000 REMARK 3 70 2.1920 - 2.1810 0.89 482 0 0.2260 0.0000 REMARK 3 71 2.1810 - 2.1710 0.91 487 0 0.2410 0.0000 REMARK 3 72 2.1710 - 2.1610 0.89 470 0 0.2460 0.0000 REMARK 3 73 2.1610 - 2.1510 0.89 486 0 0.2310 0.0000 REMARK 3 74 2.1510 - 2.1410 0.88 501 0 0.2370 0.0000 REMARK 3 75 2.1410 - 2.1320 0.89 476 0 0.2340 0.0000 REMARK 3 76 2.1320 - 2.1220 0.88 443 0 0.2270 0.0000 REMARK 3 77 2.1220 - 2.1130 0.88 508 0 0.2380 0.0000 REMARK 3 78 2.1130 - 2.1040 0.88 458 0 0.2200 0.0000 REMARK 3 79 2.1040 - 2.0950 0.85 466 0 0.2210 0.0000 REMARK 3 80 2.0950 - 2.0860 0.87 482 0 0.2310 0.0000 REMARK 3 81 2.0860 - 2.0780 0.87 459 0 0.2290 0.0000 REMARK 3 82 2.0780 - 2.0690 0.86 462 0 0.2430 0.0000 REMARK 3 83 2.0690 - 2.0610 0.88 466 0 0.2280 0.0000 REMARK 3 84 2.0610 - 2.0530 0.89 483 0 0.2490 0.0000 REMARK 3 85 2.0530 - 2.0450 0.86 469 0 0.2370 0.0000 REMARK 3 86 2.0450 - 2.0370 0.84 449 0 0.2330 0.0000 REMARK 3 87 2.0370 - 2.0290 0.80 433 0 0.2710 0.0000 REMARK 3 88 2.0290 - 2.0210 0.84 461 0 0.2450 0.0000 REMARK 3 89 2.0210 - 2.0140 0.83 433 0 0.2590 0.0000 REMARK 3 90 2.0140 - 2.0060 0.83 446 0 0.2610 0.0000 REMARK 3 91 2.0060 - 1.9990 0.80 448 0 0.2300 0.0000 REMARK 3 92 1.9990 - 1.9920 0.80 427 0 0.2590 0.0000 REMARK 3 93 1.9920 - 1.9840 0.81 435 0 0.2540 0.0000 REMARK 3 94 1.9840 - 1.9770 0.80 449 0 0.2610 0.0000 REMARK 3 95 1.9770 - 1.9700 0.77 407 0 0.2630 0.0000 REMARK 3 96 1.9700 - 1.9640 0.74 389 0 0.2950 0.0000 REMARK 3 97 1.9640 - 1.9570 0.79 410 0 0.2670 0.0000 REMARK 3 98 1.9570 - 1.9500 0.74 425 0 0.2660 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 61.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.67300 REMARK 3 B22 (A**2) : 9.62600 REMARK 3 B33 (A**2) : 8.04700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : 0.700 NULL REMARK 3 CHIRALITY : 0.053 NULL REMARK 3 PLANARITY : 0.003 NULL REMARK 3 DIHEDRAL : 9.977 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR. ADJUSTABLE REMARK 200 FOCUSING MIRRORS IN K-B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.0787 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.035 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150MM SODIUM ACETATE, 2M SODIUM REMARK 280 FORMATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.12450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.40700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.12450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.40700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN C 165 REMARK 465 GLY D 142 REMARK 465 GLY D 143 REMARK 465 LYS D 144 REMARK 465 GLN D 145 REMARK 465 TRP D 146 REMARK 465 LYS D 147 REMARK 465 GLY D 148 REMARK 465 GLN D 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLN A 165 CG CD OE1 NE2 REMARK 470 MET B 61 CG SD CE REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 470 MET C 1 CG SD CE REMARK 470 ARG C 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 ASN D 31 CG OD1 ND2 REMARK 470 GLU D 35 CG CD OE1 OE2 REMARK 470 LYS D 129 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 84.28 -164.17 REMARK 500 CYS A 52 -136.11 58.26 REMARK 500 HIS A 53 48.35 -82.81 REMARK 500 TRP A 138 54.69 -109.35 REMARK 500 CYS B 52 -137.31 54.39 REMARK 500 TRP B 138 56.31 -97.12 REMARK 500 GLN B 164 38.36 -91.69 REMARK 500 ASN C 31 15.68 -143.73 REMARK 500 ASP C 32 73.88 -166.76 REMARK 500 ASP C 44 -168.90 -73.39 REMARK 500 CYS C 52 -136.12 56.51 REMARK 500 TRP C 138 55.15 -110.31 REMARK 500 PRO D 2 95.94 -59.59 REMARK 500 CYS D 52 -138.11 57.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY D 163 GLN D 164 -137.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HDF RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHORS RESIDUES PHE 105 AND VAL 106 ARE CORRECT REMARK 999 IN THE PDB FILE. DBREF 3HDE A 1 165 UNP P27359 LYS_BPP21 1 165 DBREF 3HDE B 1 165 UNP P27359 LYS_BPP21 1 165 DBREF 3HDE C 1 165 UNP P27359 LYS_BPP21 1 165 DBREF 3HDE D 1 165 UNP P27359 LYS_BPP21 1 165 SEQADV 3HDE PHE A 105 UNP P27359 LEU 105 SEE REMARK 999 SEQADV 3HDE VAL A 106 UNP P27359 LEU 106 SEE REMARK 999 SEQADV 3HDE PHE B 105 UNP P27359 LEU 105 SEE REMARK 999 SEQADV 3HDE VAL B 106 UNP P27359 LEU 106 SEE REMARK 999 SEQADV 3HDE PHE C 105 UNP P27359 LEU 105 SEE REMARK 999 SEQADV 3HDE VAL C 106 UNP P27359 LEU 106 SEE REMARK 999 SEQADV 3HDE PHE D 105 UNP P27359 LEU 105 SEE REMARK 999 SEQADV 3HDE VAL D 106 UNP P27359 LEU 106 SEE REMARK 999 SEQRES 1 A 165 MET PRO PRO SER LEU ARG LYS ALA VAL ALA ALA ALA ILE SEQRES 2 A 165 GLY GLY GLY ALA ILE ALA ILE ALA SER VAL LEU ILE THR SEQRES 3 A 165 GLY PRO SER GLY ASN ASP GLY LEU GLU GLY VAL SER TYR SEQRES 4 A 165 ILE PRO TYR LYS ASP ILE VAL GLY VAL TRP THR VAL CYS SEQRES 5 A 165 HIS GLY HIS THR GLY LYS ASP ILE MET LEU GLY LYS THR SEQRES 6 A 165 TYR THR LYS ALA GLU CYS LYS ALA LEU LEU ASN LYS ASP SEQRES 7 A 165 LEU ALA THR VAL ALA ARG GLN ILE ASN PRO TYR ILE LYS SEQRES 8 A 165 VAL ASP ILE PRO GLU THR MET ARG GLY ALA LEU TYR SER SEQRES 9 A 165 PHE VAL TYR ASN VAL GLY ALA GLY ASN PHE ARG THR SER SEQRES 10 A 165 THR LEU LEU ARG LYS ILE ASN GLN GLY ASP ILE LYS GLY SEQRES 11 A 165 ALA CYS ASP GLN LEU ARG ARG TRP THR TYR ALA GLY GLY SEQRES 12 A 165 LYS GLN TRP LYS GLY LEU MET THR ARG ARG GLU ILE GLU SEQRES 13 A 165 ARG GLU ILE CYS LEU TRP GLY GLN GLN SEQRES 1 B 165 MET PRO PRO SER LEU ARG LYS ALA VAL ALA ALA ALA ILE SEQRES 2 B 165 GLY GLY GLY ALA ILE ALA ILE ALA SER VAL LEU ILE THR SEQRES 3 B 165 GLY PRO SER GLY ASN ASP GLY LEU GLU GLY VAL SER TYR SEQRES 4 B 165 ILE PRO TYR LYS ASP ILE VAL GLY VAL TRP THR VAL CYS SEQRES 5 B 165 HIS GLY HIS THR GLY LYS ASP ILE MET LEU GLY LYS THR SEQRES 6 B 165 TYR THR LYS ALA GLU CYS LYS ALA LEU LEU ASN LYS ASP SEQRES 7 B 165 LEU ALA THR VAL ALA ARG GLN ILE ASN PRO TYR ILE LYS SEQRES 8 B 165 VAL ASP ILE PRO GLU THR MET ARG GLY ALA LEU TYR SER SEQRES 9 B 165 PHE VAL TYR ASN VAL GLY ALA GLY ASN PHE ARG THR SER SEQRES 10 B 165 THR LEU LEU ARG LYS ILE ASN GLN GLY ASP ILE LYS GLY SEQRES 11 B 165 ALA CYS ASP GLN LEU ARG ARG TRP THR TYR ALA GLY GLY SEQRES 12 B 165 LYS GLN TRP LYS GLY LEU MET THR ARG ARG GLU ILE GLU SEQRES 13 B 165 ARG GLU ILE CYS LEU TRP GLY GLN GLN SEQRES 1 C 165 MET PRO PRO SER LEU ARG LYS ALA VAL ALA ALA ALA ILE SEQRES 2 C 165 GLY GLY GLY ALA ILE ALA ILE ALA SER VAL LEU ILE THR SEQRES 3 C 165 GLY PRO SER GLY ASN ASP GLY LEU GLU GLY VAL SER TYR SEQRES 4 C 165 ILE PRO TYR LYS ASP ILE VAL GLY VAL TRP THR VAL CYS SEQRES 5 C 165 HIS GLY HIS THR GLY LYS ASP ILE MET LEU GLY LYS THR SEQRES 6 C 165 TYR THR LYS ALA GLU CYS LYS ALA LEU LEU ASN LYS ASP SEQRES 7 C 165 LEU ALA THR VAL ALA ARG GLN ILE ASN PRO TYR ILE LYS SEQRES 8 C 165 VAL ASP ILE PRO GLU THR MET ARG GLY ALA LEU TYR SER SEQRES 9 C 165 PHE VAL TYR ASN VAL GLY ALA GLY ASN PHE ARG THR SER SEQRES 10 C 165 THR LEU LEU ARG LYS ILE ASN GLN GLY ASP ILE LYS GLY SEQRES 11 C 165 ALA CYS ASP GLN LEU ARG ARG TRP THR TYR ALA GLY GLY SEQRES 12 C 165 LYS GLN TRP LYS GLY LEU MET THR ARG ARG GLU ILE GLU SEQRES 13 C 165 ARG GLU ILE CYS LEU TRP GLY GLN GLN SEQRES 1 D 165 MET PRO PRO SER LEU ARG LYS ALA VAL ALA ALA ALA ILE SEQRES 2 D 165 GLY GLY GLY ALA ILE ALA ILE ALA SER VAL LEU ILE THR SEQRES 3 D 165 GLY PRO SER GLY ASN ASP GLY LEU GLU GLY VAL SER TYR SEQRES 4 D 165 ILE PRO TYR LYS ASP ILE VAL GLY VAL TRP THR VAL CYS SEQRES 5 D 165 HIS GLY HIS THR GLY LYS ASP ILE MET LEU GLY LYS THR SEQRES 6 D 165 TYR THR LYS ALA GLU CYS LYS ALA LEU LEU ASN LYS ASP SEQRES 7 D 165 LEU ALA THR VAL ALA ARG GLN ILE ASN PRO TYR ILE LYS SEQRES 8 D 165 VAL ASP ILE PRO GLU THR MET ARG GLY ALA LEU TYR SER SEQRES 9 D 165 PHE VAL TYR ASN VAL GLY ALA GLY ASN PHE ARG THR SER SEQRES 10 D 165 THR LEU LEU ARG LYS ILE ASN GLN GLY ASP ILE LYS GLY SEQRES 11 D 165 ALA CYS ASP GLN LEU ARG ARG TRP THR TYR ALA GLY GLY SEQRES 12 D 165 LYS GLN TRP LYS GLY LEU MET THR ARG ARG GLU ILE GLU SEQRES 13 D 165 ARG GLU ILE CYS LEU TRP GLY GLN GLN FORMUL 5 HOH *365(H2 O) HELIX 1 1 PRO A 2 ILE A 13 1 12 HELIX 2 2 GLY A 15 GLY A 27 1 13 HELIX 3 3 THR A 67 ASN A 87 1 21 HELIX 4 4 PRO A 88 ILE A 90 5 3 HELIX 5 5 PRO A 95 GLY A 110 1 16 HELIX 6 6 GLY A 110 THR A 116 1 7 HELIX 7 7 SER A 117 GLN A 125 1 9 HELIX 8 8 ASP A 127 LEU A 135 1 9 HELIX 9 9 ARG A 136 TRP A 138 5 3 HELIX 10 10 TRP A 146 LEU A 161 1 16 HELIX 11 11 TRP A 162 GLN A 165 5 4 HELIX 12 12 PRO B 2 ILE B 13 1 12 HELIX 13 13 GLY B 15 GLY B 27 1 13 HELIX 14 14 THR B 67 ASN B 87 1 21 HELIX 15 15 PRO B 88 ILE B 90 5 3 HELIX 16 16 PRO B 95 GLY B 110 1 16 HELIX 17 17 GLY B 110 THR B 116 1 7 HELIX 18 18 SER B 117 GLN B 125 1 9 HELIX 19 19 ASP B 127 GLN B 134 1 8 HELIX 20 20 LEU B 135 TRP B 138 5 4 HELIX 21 21 TRP B 146 LEU B 161 1 16 HELIX 22 22 PRO C 2 ILE C 13 1 12 HELIX 23 23 GLY C 15 GLY C 27 1 13 HELIX 24 24 THR C 67 ASN C 87 1 21 HELIX 25 25 PRO C 95 GLY C 110 1 16 HELIX 26 26 GLY C 110 THR C 116 1 7 HELIX 27 27 SER C 117 GLN C 125 1 9 HELIX 28 28 ASP C 127 GLN C 134 1 8 HELIX 29 29 LEU C 135 TRP C 138 5 4 HELIX 30 30 TRP C 146 LEU C 161 1 16 HELIX 31 31 PRO D 2 ILE D 13 1 12 HELIX 32 32 GLY D 15 GLY D 27 1 13 HELIX 33 33 THR D 67 ASN D 87 1 21 HELIX 34 34 PRO D 88 ILE D 90 5 3 HELIX 35 35 PRO D 95 GLY D 110 1 16 HELIX 36 36 GLY D 110 THR D 116 1 7 HELIX 37 37 SER D 117 GLN D 125 1 9 HELIX 38 38 ASP D 127 GLN D 134 1 8 HELIX 39 39 LEU D 135 TRP D 138 5 4 HELIX 40 40 LEU D 149 TRP D 162 1 14 SHEET 1 A 2 SER A 38 LYS A 43 0 SHEET 2 A 2 TRP A 49 CYS A 52 -1 O THR A 50 N TYR A 42 SHEET 1 B 2 TYR A 140 ALA A 141 0 SHEET 2 B 2 LYS A 144 GLN A 145 -1 O LYS A 144 N ALA A 141 SHEET 1 C 2 SER B 38 LYS B 43 0 SHEET 2 C 2 TRP B 49 CYS B 52 -1 O THR B 50 N TYR B 42 SHEET 1 D 2 TYR B 140 ALA B 141 0 SHEET 2 D 2 LYS B 144 GLN B 145 -1 O LYS B 144 N ALA B 141 SHEET 1 E 3 SER C 38 LYS C 43 0 SHEET 2 E 3 TRP C 49 CYS C 52 -1 O CYS C 52 N SER C 38 SHEET 3 E 3 HIS C 55 THR C 56 -1 O HIS C 55 N VAL C 51 SHEET 1 F 2 TYR C 140 ALA C 141 0 SHEET 2 F 2 LYS C 144 GLN C 145 -1 O LYS C 144 N ALA C 141 SHEET 1 G 3 SER D 38 LYS D 43 0 SHEET 2 G 3 TRP D 49 CYS D 52 -1 O THR D 50 N TYR D 42 SHEET 3 G 3 HIS D 55 THR D 56 -1 O HIS D 55 N VAL D 51 SSBOND 1 CYS A 52 CYS A 71 1555 1555 2.05 SSBOND 2 CYS A 132 CYS A 160 1555 1555 2.06 SSBOND 3 CYS B 52 CYS B 71 1555 1555 2.04 SSBOND 4 CYS B 132 CYS B 160 1555 1555 2.01 SSBOND 5 CYS C 52 CYS C 71 1555 1555 2.05 SSBOND 6 CYS C 132 CYS C 160 1555 1555 2.07 SSBOND 7 CYS D 52 CYS D 71 1555 1555 2.02 SSBOND 8 CYS D 132 CYS D 160 1555 1555 1.99 CRYST1 78.249 94.814 97.650 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010241 0.00000