HEADER HYDROLASE 07-MAY-09 3HDF TITLE CRYSTAL STRUCTURE OF TRUNCATED ENDOLYSIN R21 FROM PHAGE 21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 27-165; COMPND 5 SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P21; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE 21; SOURCE 4 ORGANISM_TAXID: 10711; SOURCE 5 GENE: R; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LYSOZYME-LIKE, ANTIMICROBIAL, BACTERIOLYTIC ENZYME, GLYCOSIDASE, KEYWDS 2 HYDROLASE, LATE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.SUN,J.C.SACCHETTINI REVDAT 4 01-NOV-17 3HDF 1 REMARK REVDAT 3 13-JUL-11 3HDF 1 VERSN REVDAT 2 19-JAN-10 3HDF 1 JRNL REVDAT 1 03-NOV-09 3HDF 0 JRNL AUTH Q.SUN,G.F.KUTY,A.AROCKIASAMY,M.XU,R.YOUNG,J.C.SACCHETTINI JRNL TITL REGULATION OF A MURALYTIC ENZYME BY DYNAMIC MEMBRANE JRNL TITL 2 TOPOLOGY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 1192 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19881499 JRNL DOI 10.1038/NSMB.1681 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8010 - 6.9210 0.91 562 0 0.2530 0.0000 REMARK 3 2 6.9210 - 5.5000 0.96 541 0 0.2530 0.0000 REMARK 3 3 5.5000 - 4.8070 0.96 533 0 0.1940 0.0000 REMARK 3 4 4.8070 - 4.3690 0.93 507 0 0.1860 0.0000 REMARK 3 5 4.3690 - 4.0560 0.94 509 0 0.1640 0.0000 REMARK 3 6 4.0560 - 3.8170 0.93 506 0 0.1550 0.0000 REMARK 3 7 3.8170 - 3.6260 0.95 516 0 0.1480 0.0000 REMARK 3 8 3.6260 - 3.4680 0.96 502 0 0.1650 0.0000 REMARK 3 9 3.4680 - 3.3350 0.96 535 0 0.1770 0.0000 REMARK 3 10 3.3350 - 3.2200 0.94 489 0 0.1930 0.0000 REMARK 3 11 3.2200 - 3.1190 0.95 510 0 0.1760 0.0000 REMARK 3 12 3.1190 - 3.0300 0.95 500 0 0.1990 0.0000 REMARK 3 13 3.0300 - 2.9510 0.95 512 0 0.1990 0.0000 REMARK 3 14 2.9510 - 2.8790 0.96 513 0 0.1920 0.0000 REMARK 3 15 2.8790 - 2.8130 0.94 476 0 0.2080 0.0000 REMARK 3 16 2.8130 - 2.7530 0.93 520 0 0.2130 0.0000 REMARK 3 17 2.7530 - 2.6980 0.94 483 0 0.2170 0.0000 REMARK 3 18 2.6980 - 2.6470 0.96 506 0 0.1970 0.0000 REMARK 3 19 2.6470 - 2.6000 0.96 508 0 0.2130 0.0000 REMARK 3 20 2.6000 - 2.5560 0.95 510 0 0.1960 0.0000 REMARK 3 21 2.5560 - 2.5150 0.96 488 0 0.2000 0.0000 REMARK 3 22 2.5150 - 2.4760 0.95 504 0 0.1920 0.0000 REMARK 3 23 2.4760 - 2.4400 0.95 500 0 0.1870 0.0000 REMARK 3 24 2.4400 - 2.4050 0.94 494 0 0.1970 0.0000 REMARK 3 25 2.4050 - 2.3730 0.96 488 0 0.1910 0.0000 REMARK 3 26 2.3730 - 2.3420 0.95 525 0 0.1920 0.0000 REMARK 3 27 2.3420 - 2.3130 0.94 484 0 0.1920 0.0000 REMARK 3 28 2.3130 - 2.2850 0.96 496 0 0.1830 0.0000 REMARK 3 29 2.2850 - 2.2580 0.95 497 0 0.1880 0.0000 REMARK 3 30 2.2580 - 2.2330 0.96 501 0 0.1860 0.0000 REMARK 3 31 2.2330 - 2.2090 0.94 501 0 0.1960 0.0000 REMARK 3 32 2.2090 - 2.1850 0.94 486 0 0.1810 0.0000 REMARK 3 33 2.1850 - 2.1630 0.95 490 0 0.1740 0.0000 REMARK 3 34 2.1630 - 2.1420 0.95 483 0 0.2000 0.0000 REMARK 3 35 2.1420 - 2.1210 0.93 497 0 0.1900 0.0000 REMARK 3 36 2.1210 - 2.1010 0.96 508 0 0.2000 0.0000 REMARK 3 37 2.1010 - 2.0820 0.94 468 0 0.1890 0.0000 REMARK 3 38 2.0820 - 2.0640 0.95 497 0 0.1950 0.0000 REMARK 3 39 2.0640 - 2.0460 0.94 491 0 0.1850 0.0000 REMARK 3 40 2.0460 - 2.0290 0.94 502 0 0.1900 0.0000 REMARK 3 41 2.0290 - 2.0120 0.95 465 0 0.1990 0.0000 REMARK 3 42 2.0120 - 1.9960 0.95 512 0 0.1950 0.0000 REMARK 3 43 1.9960 - 1.9810 0.95 495 0 0.2010 0.0000 REMARK 3 44 1.9810 - 1.9650 0.94 479 0 0.1900 0.0000 REMARK 3 45 1.9650 - 1.9510 0.96 484 0 0.2060 0.0000 REMARK 3 46 1.9510 - 1.9360 0.94 524 0 0.2020 0.0000 REMARK 3 47 1.9360 - 1.9230 0.95 485 0 0.2020 0.0000 REMARK 3 48 1.9230 - 1.9090 0.94 479 0 0.2070 0.0000 REMARK 3 49 1.9090 - 1.8960 0.95 477 0 0.2110 0.0000 REMARK 3 50 1.8960 - 1.8830 0.95 487 0 0.2220 0.0000 REMARK 3 51 1.8830 - 1.8710 0.96 498 0 0.2210 0.0000 REMARK 3 52 1.8710 - 1.8590 0.95 525 0 0.2230 0.0000 REMARK 3 53 1.8590 - 1.8470 0.96 476 0 0.2280 0.0000 REMARK 3 54 1.8470 - 1.8360 0.96 498 0 0.2040 0.0000 REMARK 3 55 1.8360 - 1.8250 0.96 497 0 0.2210 0.0000 REMARK 3 56 1.8250 - 1.8140 0.93 480 0 0.2250 0.0000 REMARK 3 57 1.8140 - 1.8030 0.95 484 0 0.2100 0.0000 REMARK 3 58 1.8030 - 1.7930 0.96 491 0 0.2430 0.0000 REMARK 3 59 1.7930 - 1.7820 0.94 484 0 0.2240 0.0000 REMARK 3 60 1.7820 - 1.7720 0.96 516 0 0.2270 0.0000 REMARK 3 61 1.7720 - 1.7630 0.94 503 0 0.2440 0.0000 REMARK 3 62 1.7630 - 1.7530 0.95 471 0 0.2280 0.0000 REMARK 3 63 1.7530 - 1.7440 0.96 475 0 0.2410 0.0000 REMARK 3 64 1.7440 - 1.7350 0.95 487 0 0.2280 0.0000 REMARK 3 65 1.7350 - 1.7260 0.95 497 0 0.2460 0.0000 REMARK 3 66 1.7260 - 1.7170 0.96 517 0 0.2510 0.0000 REMARK 3 67 1.7170 - 1.7080 0.95 485 0 0.2540 0.0000 REMARK 3 68 1.7080 - 1.7000 0.94 486 0 0.2470 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 63.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.42300 REMARK 3 B22 (A**2) : 0.34400 REMARK 3 B33 (A**2) : -4.82100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 NULL REMARK 3 ANGLE : 0.647 NULL REMARK 3 CHIRALITY : 0.049 NULL REMARK 3 PLANARITY : 0.003 NULL REMARK 3 DIHEDRAL : 8.369 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR. ADJUSTABLE REMARK 200 FOCUSING MIRRORS IN K-B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.1630 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PROPANE, 2.5M SODIUM REMARK 280 NITRATE, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.09500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.83650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.09500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.83650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 ASN A 31 REMARK 465 GLN A 165 REMARK 465 MET B 26 REMARK 465 GLY B 27 REMARK 465 PRO B 28 REMARK 465 SER B 29 REMARK 465 GLY B 30 REMARK 465 ASN B 31 REMARK 465 GLN B 164 REMARK 465 GLN B 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 ASP B 32 CG OD1 OD2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 LYS B 144 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 52 -133.99 61.81 REMARK 500 CYS B 52 -131.09 60.69 REMARK 500 TRP B 146 119.45 -164.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HDE RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHORS RESIDUES PHE 105 AND VAL 106 ARE CORRECT REMARK 999 IN THE PDB FILE. DBREF 3HDF A 27 165 UNP P27359 LYS_BPP21 27 165 DBREF 3HDF B 27 165 UNP P27359 LYS_BPP21 27 165 SEQADV 3HDF MET A 26 UNP P27359 INITIATING METHIONINE SEQADV 3HDF PHE A 105 UNP P27359 LEU 105 SEE REMARK 999 SEQADV 3HDF VAL A 106 UNP P27359 LEU 106 SEE REMARK 999 SEQADV 3HDF MET B 26 UNP P27359 INITIATING METHIONINE SEQADV 3HDF PHE B 105 UNP P27359 LEU 105 SEE REMARK 999 SEQADV 3HDF VAL B 106 UNP P27359 LEU 106 SEE REMARK 999 SEQRES 1 A 140 MET GLY PRO SER GLY ASN ASP GLY LEU GLU GLY VAL SER SEQRES 2 A 140 TYR ILE PRO TYR LYS ASP ILE VAL GLY VAL TRP THR VAL SEQRES 3 A 140 CYS HIS GLY HIS THR GLY LYS ASP ILE MET LEU GLY LYS SEQRES 4 A 140 THR TYR THR LYS ALA GLU CYS LYS ALA LEU LEU ASN LYS SEQRES 5 A 140 ASP LEU ALA THR VAL ALA ARG GLN ILE ASN PRO TYR ILE SEQRES 6 A 140 LYS VAL ASP ILE PRO GLU THR MET ARG GLY ALA LEU TYR SEQRES 7 A 140 SER PHE VAL TYR ASN VAL GLY ALA GLY ASN PHE ARG THR SEQRES 8 A 140 SER THR LEU LEU ARG LYS ILE ASN GLN GLY ASP ILE LYS SEQRES 9 A 140 GLY ALA CYS ASP GLN LEU ARG ARG TRP THR TYR ALA GLY SEQRES 10 A 140 GLY LYS GLN TRP LYS GLY LEU MET THR ARG ARG GLU ILE SEQRES 11 A 140 GLU ARG GLU ILE CYS LEU TRP GLY GLN GLN SEQRES 1 B 140 MET GLY PRO SER GLY ASN ASP GLY LEU GLU GLY VAL SER SEQRES 2 B 140 TYR ILE PRO TYR LYS ASP ILE VAL GLY VAL TRP THR VAL SEQRES 3 B 140 CYS HIS GLY HIS THR GLY LYS ASP ILE MET LEU GLY LYS SEQRES 4 B 140 THR TYR THR LYS ALA GLU CYS LYS ALA LEU LEU ASN LYS SEQRES 5 B 140 ASP LEU ALA THR VAL ALA ARG GLN ILE ASN PRO TYR ILE SEQRES 6 B 140 LYS VAL ASP ILE PRO GLU THR MET ARG GLY ALA LEU TYR SEQRES 7 B 140 SER PHE VAL TYR ASN VAL GLY ALA GLY ASN PHE ARG THR SEQRES 8 B 140 SER THR LEU LEU ARG LYS ILE ASN GLN GLY ASP ILE LYS SEQRES 9 B 140 GLY ALA CYS ASP GLN LEU ARG ARG TRP THR TYR ALA GLY SEQRES 10 B 140 GLY LYS GLN TRP LYS GLY LEU MET THR ARG ARG GLU ILE SEQRES 11 B 140 GLU ARG GLU ILE CYS LEU TRP GLY GLN GLN HET NO3 A1210 4 HET GOL A1001 6 HET GOL A1002 6 HET GOL A1003 6 HET GOL A1004 6 HET GOL A1006 6 HET GOL A1007 6 HET NO3 B1202 4 HET NO3 B1201 4 HET NO3 B1203 4 HET NO3 B1205 4 HET NO3 B1206 4 HET NO3 B1207 4 HET NO3 B1208 4 HET NO3 B1209 4 HET NO3 B1211 4 HETNAM NO3 NITRATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NO3 10(N O3 1-) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 19 HOH *310(H2 O) HELIX 1 1 THR A 67 ASN A 87 1 21 HELIX 2 2 PRO A 88 ILE A 90 5 3 HELIX 3 3 PRO A 95 GLY A 110 1 16 HELIX 4 4 ASN A 113 GLY A 126 1 14 HELIX 5 5 ASP A 127 ARG A 137 1 11 HELIX 6 6 THR A 151 GLN A 164 1 14 HELIX 7 7 THR B 67 ASN B 87 1 21 HELIX 8 8 PRO B 88 ILE B 90 5 3 HELIX 9 9 PRO B 95 GLY B 110 1 16 HELIX 10 10 ASN B 113 GLN B 125 1 13 HELIX 11 11 ASP B 127 ALA B 141 1 15 HELIX 12 12 THR B 151 LEU B 161 1 11 SHEET 1 A 2 SER A 38 LYS A 43 0 SHEET 2 A 2 TRP A 49 CYS A 52 -1 O THR A 50 N TYR A 42 SHEET 1 B 3 SER B 38 LYS B 43 0 SHEET 2 B 3 TRP B 49 CYS B 52 -1 O THR B 50 N TYR B 42 SHEET 3 B 3 HIS B 55 THR B 56 -1 O HIS B 55 N VAL B 51 SSBOND 1 CYS A 52 CYS A 71 1555 1555 2.03 SSBOND 2 CYS A 132 CYS A 160 1555 1555 2.02 SSBOND 3 CYS B 52 CYS B 71 1555 1555 2.02 SSBOND 4 CYS B 132 CYS B 160 1555 1555 2.02 SITE 1 AC1 4 LYS A 68 ALA A 69 LYS A 72 ARG B 121 SITE 1 AC2 9 PRO A 41 TYR A 42 HOH A1221 HOH A1235 SITE 2 AC2 9 HOH A1256 ILE B 40 PRO B 41 HOH B1230 SITE 3 AC2 9 HOH B1289 SITE 1 AC3 5 ILE A 86 TYR A 89 ALA A 111 SER A 117 SITE 2 AC3 5 HOH A1444 SITE 1 AC4 10 PHE A 114 HOH A1239 HOH A1339 HOH A1673 SITE 2 AC4 10 LEU B 75 LEU B 79 SER B 104 GLY B 148 SITE 3 AC4 10 LEU B 149 MET B 150 SITE 1 AC5 7 LYS A 122 GLN A 134 ARG A 137 HOH A1225 SITE 2 AC5 7 ALA B 73 ASN B 76 HOH B1231 SITE 1 AC6 7 PHE A 105 ARG A 115 GLN A 134 TRP A 138 SITE 2 AC6 7 ARG A 152 HOH A1302 ASN B 76 SITE 1 AC7 6 HOH A1310 HOH A1327 HIS B 53 TRP B 146 SITE 2 AC7 6 LYS B 147 GLY B 148 SITE 1 AC8 8 LEU A 79 SER A 104 GLY A 148 LEU A 149 SITE 2 AC8 8 MET A 150 HOH A1284 PHE B 114 HOH B1278 SITE 1 AC9 4 SER B 38 TYR B 39 ILE B 40 HOH B1289 SITE 1 BC1 3 GLY B 57 LYS B 58 ILE B 60 SITE 1 BC2 7 LEU A 34 VAL A 37 TYR A 39 HIS A 53 SITE 2 BC2 7 LYS A 68 CYS A 71 LYS A 72 SITE 1 BC3 6 LEU B 34 TYR B 39 HIS B 53 LYS B 68 SITE 2 BC3 6 CYS B 71 LYS B 72 SITE 1 BC4 7 ASN A 76 PHE B 105 ARG B 115 GLN B 134 SITE 2 BC4 7 LEU B 135 TRP B 138 ARG B 152 SITE 1 BC5 5 SER A 38 TYR A 39 ILE A 40 HOH A1256 SITE 2 BC5 5 HOH B1643 SITE 1 BC6 4 ARG A 121 LYS B 68 ALA B 69 LYS B 72 SITE 1 BC7 3 GLY A 57 LYS A 58 ILE A 60 CRYST1 64.190 109.673 45.015 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015579 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022215 0.00000