HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 07-MAY-09 3HDJ TITLE THE CRYSTAL STRUCTURE OF PROBABLE ORNITHINE CYCLODEAMINASE FROM TITLE 2 BORDETELLA PERTUSSIS TOHAMA I COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ORNITHINE CYCLODEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 STRAIN: TOHAMA I; SOURCE 5 GENE: BORDETELLA PERTUSSIS, BP0354; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS APC62486, ORNITHINE CYCLODEAMINASE, BORDETELLA PERTUSSIS TOHAMA I, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,A.SATHER,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 13-JUL-11 3HDJ 1 VERSN REVDAT 1 19-MAY-09 3HDJ 0 JRNL AUTH K.TAN,A.SATHER,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF PROBABLE ORNITHINE CYCLODEAMINASE JRNL TITL 2 FROM BORDETELLA PERTUSSIS TOHAMA I JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 69889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4978 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 500 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4848 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6620 ; 1.488 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 5.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;30.944 ;21.980 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 771 ;15.883 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;19.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3733 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3168 ; 0.867 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5047 ; 1.505 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1680 ; 2.583 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1547 ; 4.177 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8980 13.0380 13.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.0930 REMARK 3 T33: 0.0503 T12: -0.0171 REMARK 3 T13: 0.0196 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.2722 L22: 0.3097 REMARK 3 L33: 1.7724 L12: 0.0430 REMARK 3 L13: 0.4015 L23: 0.3120 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.0186 S13: -0.0510 REMARK 3 S21: 0.0457 S22: -0.0685 S23: 0.0716 REMARK 3 S31: 0.1119 S32: -0.3250 S33: 0.0580 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 310 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5120 11.1540 38.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.0264 REMARK 3 T33: 0.0370 T12: 0.0090 REMARK 3 T13: 0.0222 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.7326 L22: 0.4909 REMARK 3 L33: 1.2217 L12: -0.1657 REMARK 3 L13: 0.2835 L23: -0.2984 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: 0.0028 S13: -0.0943 REMARK 3 S21: -0.0647 S22: -0.0709 S23: -0.0595 REMARK 3 S31: 0.0769 S32: 0.1640 S33: 0.0364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB053000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73662 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/ARP/WARP/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M NACL, 0.1M IMIDAZOLE, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.46150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAINS A AND B ARE PREDICTED TO REMARK 300 FORM A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 150 114.96 -167.40 REMARK 500 GLU A 236 -75.79 -43.39 REMARK 500 MSE B 1 147.57 -32.33 REMARK 500 TRP B 234 115.02 -162.71 REMARK 500 ASP B 251 -35.21 -34.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 340 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH B 569 DISTANCE = 5.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62486 RELATED DB: TARGETDB DBREF 3HDJ A 1 310 UNP Q7VSP8 Q7VSP8_BORPE 1 310 DBREF 3HDJ B 1 310 UNP Q7VSP8 Q7VSP8_BORPE 1 310 SEQADV 3HDJ SER A -2 UNP Q7VSP8 EXPRESSION TAG SEQADV 3HDJ ASN A -1 UNP Q7VSP8 EXPRESSION TAG SEQADV 3HDJ ALA A 0 UNP Q7VSP8 EXPRESSION TAG SEQADV 3HDJ SER B -2 UNP Q7VSP8 EXPRESSION TAG SEQADV 3HDJ ASN B -1 UNP Q7VSP8 EXPRESSION TAG SEQADV 3HDJ ALA B 0 UNP Q7VSP8 EXPRESSION TAG SEQRES 1 A 313 SER ASN ALA MSE LEU HIS ILE ASP ASP ALA MSE ILE GLU SEQRES 2 A 313 ASP ALA VAL THR PRO GLN ALA ALA GLN GLU VAL LEU HIS SEQRES 3 A 313 ALA ALA PHE LEU ASP PHE GLY ARG GLY SER ALA ALA MSE SEQRES 4 A 313 GLN ARG ARG VAL ARG THR GLU ALA GLY GLY VAL LYS LEU SEQRES 5 A 313 SER THR LEU GLY ALA VAL ILE PRO GLY GLN GLY VAL ALA SEQRES 6 A 313 GLY ALA LYS VAL TYR THR THR ILE LYS GLY GLN PHE GLN SEQRES 7 A 313 PHE VAL ILE LEU LEU PHE SER ALA ALA ASP GLY ARG PRO SEQRES 8 A 313 LEU ALA THR CYS ASP ALA GLY THR LEU THR ARG LYS ARG SEQRES 9 A 313 THR ALA ALA CYS THR VAL LEU ALA ALA GLY ALA LEU ALA SEQRES 10 A 313 ARG PRO ARG SER SER VAL LEU GLY LEU PHE GLY ALA GLY SEQRES 11 A 313 THR GLN GLY ALA GLU HIS ALA ALA GLN LEU SER ALA ARG SEQRES 12 A 313 PHE ALA LEU GLU ALA ILE LEU VAL HIS ASP PRO TYR ALA SEQRES 13 A 313 SER PRO GLU ILE LEU GLU ARG ILE GLY ARG ARG CYS GLY SEQRES 14 A 313 VAL PRO ALA ARG MSE ALA ALA PRO ALA ASP ILE ALA ALA SEQRES 15 A 313 GLN ALA ASP ILE VAL VAL THR ALA THR ARG SER THR THR SEQRES 16 A 313 PRO LEU PHE ALA GLY GLN ALA LEU ARG ALA GLY ALA PHE SEQRES 17 A 313 VAL GLY ALA ILE GLY SER SER LEU PRO HIS THR ARG GLU SEQRES 18 A 313 LEU ASP ASP GLU ALA LEU ARG ARG ALA ARG ALA VAL VAL SEQRES 19 A 313 VAL GLU TRP ARG GLU GLN THR LEU SER GLU ALA GLY ASP SEQRES 20 A 313 LEU VAL LEU ALA ALA PRO ASP THR GLY LEU ASP ALA LYS SEQRES 21 A 313 VAL VAL GLU LEU ALA ASP VAL LEU ALA GLY ARG ALA ALA SEQRES 22 A 313 ALA ARG GLN ALA ASP GLU ASP ILE VAL ILE TYR LYS SER SEQRES 23 A 313 VAL GLY VAL GLY LEU GLU ASP VAL ALA LEU ALA GLY TYR SEQRES 24 A 313 ALA TYR ARG ARG LEU ALA ALA GLN ARG GLY TRP PRO ALA SEQRES 25 A 313 PRO SEQRES 1 B 313 SER ASN ALA MSE LEU HIS ILE ASP ASP ALA MSE ILE GLU SEQRES 2 B 313 ASP ALA VAL THR PRO GLN ALA ALA GLN GLU VAL LEU HIS SEQRES 3 B 313 ALA ALA PHE LEU ASP PHE GLY ARG GLY SER ALA ALA MSE SEQRES 4 B 313 GLN ARG ARG VAL ARG THR GLU ALA GLY GLY VAL LYS LEU SEQRES 5 B 313 SER THR LEU GLY ALA VAL ILE PRO GLY GLN GLY VAL ALA SEQRES 6 B 313 GLY ALA LYS VAL TYR THR THR ILE LYS GLY GLN PHE GLN SEQRES 7 B 313 PHE VAL ILE LEU LEU PHE SER ALA ALA ASP GLY ARG PRO SEQRES 8 B 313 LEU ALA THR CYS ASP ALA GLY THR LEU THR ARG LYS ARG SEQRES 9 B 313 THR ALA ALA CYS THR VAL LEU ALA ALA GLY ALA LEU ALA SEQRES 10 B 313 ARG PRO ARG SER SER VAL LEU GLY LEU PHE GLY ALA GLY SEQRES 11 B 313 THR GLN GLY ALA GLU HIS ALA ALA GLN LEU SER ALA ARG SEQRES 12 B 313 PHE ALA LEU GLU ALA ILE LEU VAL HIS ASP PRO TYR ALA SEQRES 13 B 313 SER PRO GLU ILE LEU GLU ARG ILE GLY ARG ARG CYS GLY SEQRES 14 B 313 VAL PRO ALA ARG MSE ALA ALA PRO ALA ASP ILE ALA ALA SEQRES 15 B 313 GLN ALA ASP ILE VAL VAL THR ALA THR ARG SER THR THR SEQRES 16 B 313 PRO LEU PHE ALA GLY GLN ALA LEU ARG ALA GLY ALA PHE SEQRES 17 B 313 VAL GLY ALA ILE GLY SER SER LEU PRO HIS THR ARG GLU SEQRES 18 B 313 LEU ASP ASP GLU ALA LEU ARG ARG ALA ARG ALA VAL VAL SEQRES 19 B 313 VAL GLU TRP ARG GLU GLN THR LEU SER GLU ALA GLY ASP SEQRES 20 B 313 LEU VAL LEU ALA ALA PRO ASP THR GLY LEU ASP ALA LYS SEQRES 21 B 313 VAL VAL GLU LEU ALA ASP VAL LEU ALA GLY ARG ALA ALA SEQRES 22 B 313 ALA ARG GLN ALA ASP GLU ASP ILE VAL ILE TYR LYS SER SEQRES 23 B 313 VAL GLY VAL GLY LEU GLU ASP VAL ALA LEU ALA GLY TYR SEQRES 24 B 313 ALA TYR ARG ARG LEU ALA ALA GLN ARG GLY TRP PRO ALA SEQRES 25 B 313 PRO MODRES 3HDJ MSE A 1 MET SELENOMETHIONINE MODRES 3HDJ MSE A 8 MET SELENOMETHIONINE MODRES 3HDJ MSE A 36 MET SELENOMETHIONINE MODRES 3HDJ MSE A 171 MET SELENOMETHIONINE MODRES 3HDJ MSE B 1 MET SELENOMETHIONINE MODRES 3HDJ MSE B 8 MET SELENOMETHIONINE MODRES 3HDJ MSE B 36 MET SELENOMETHIONINE MODRES 3HDJ MSE B 171 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 8 8 HET MSE A 36 8 HET MSE A 171 8 HET MSE B 1 8 HET MSE B 8 8 HET MSE B 36 8 HET MSE B 171 8 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HET CL A 314 1 HET GOL A 315 6 HET GOL A 316 6 HET IMD A 317 5 HET CL B 311 1 HET CL B 312 1 HET CL B 313 1 HET IMD B 314 5 HET IMD B 315 5 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM IMD IMIDAZOLE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CL 7(CL 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 IMD 3(C3 H5 N2 1+) FORMUL 15 HOH *500(H2 O) HELIX 1 1 ASP A 5 VAL A 13 1 9 HELIX 2 2 THR A 14 ARG A 31 1 18 HELIX 3 3 PRO A 57 GLN A 59 5 3 HELIX 4 4 ALA A 94 ALA A 114 1 21 HELIX 5 5 GLY A 127 PHE A 141 1 15 HELIX 6 6 SER A 154 GLY A 166 1 13 HELIX 7 7 ALA A 173 ALA A 181 1 9 HELIX 8 8 ALA A 196 LEU A 200 5 5 HELIX 9 9 ASP A 220 ALA A 227 1 8 HELIX 10 10 TRP A 234 ALA A 242 1 9 HELIX 11 11 ALA A 242 ALA A 248 1 7 HELIX 12 12 ALA A 249 THR A 252 5 4 HELIX 13 13 GLY A 253 LYS A 257 1 5 HELIX 14 14 LEU A 261 ALA A 266 1 6 HELIX 15 15 VAL A 286 GLY A 306 1 21 HELIX 16 16 ASP B 5 VAL B 13 1 9 HELIX 17 17 THR B 14 ARG B 31 1 18 HELIX 18 18 PRO B 57 GLN B 59 5 3 HELIX 19 19 ALA B 94 ALA B 114 1 21 HELIX 20 20 GLY B 127 PHE B 141 1 15 HELIX 21 21 SER B 154 GLY B 166 1 13 HELIX 22 22 ALA B 173 ALA B 181 1 9 HELIX 23 23 ALA B 196 LEU B 200 5 5 HELIX 24 24 ASP B 220 ALA B 227 1 8 HELIX 25 25 TRP B 234 ALA B 242 1 9 HELIX 26 26 ALA B 242 LEU B 247 1 6 HELIX 27 27 ALA B 249 THR B 252 5 4 HELIX 28 28 GLY B 253 LYS B 257 1 5 HELIX 29 29 LEU B 261 ALA B 266 1 6 HELIX 30 30 VAL B 286 GLY B 306 1 21 SHEET 1 A 6 LEU A 2 ILE A 4 0 SHEET 2 A 6 PRO A 88 CYS A 92 1 O THR A 91 N ILE A 4 SHEET 3 A 6 GLN A 73 SER A 82 -1 N LEU A 80 O LEU A 89 SHEET 4 A 6 VAL A 61 ILE A 70 -1 N ALA A 62 O PHE A 81 SHEET 5 A 6 VAL A 47 ILE A 56 -1 N ILE A 56 O VAL A 61 SHEET 6 A 6 ALA A 35 ALA A 44 -1 N THR A 42 O LEU A 49 SHEET 1 B 8 ALA A 169 MSE A 171 0 SHEET 2 B 8 ALA A 145 HIS A 149 1 N VAL A 148 O ARG A 170 SHEET 3 B 8 VAL A 120 PHE A 124 1 N LEU A 121 O LEU A 147 SHEET 4 B 8 ILE A 183 THR A 186 1 O ILE A 183 N GLY A 122 SHEET 5 B 8 PHE A 205 ALA A 208 1 O GLY A 207 N VAL A 184 SHEET 6 B 8 VAL A 279 LYS A 282 1 O TYR A 281 N VAL A 206 SHEET 7 B 8 ALA A 229 VAL A 232 1 N VAL A 231 O ILE A 280 SHEET 8 B 8 VAL A 258 GLU A 260 1 O VAL A 259 N VAL A 232 SHEET 1 C 6 HIS B 3 ILE B 4 0 SHEET 2 C 6 PRO B 88 ASP B 93 1 O ASP B 93 N ILE B 4 SHEET 3 C 6 GLN B 73 SER B 82 -1 N LEU B 80 O LEU B 89 SHEET 4 C 6 VAL B 61 ILE B 70 -1 N ALA B 62 O PHE B 81 SHEET 5 C 6 VAL B 47 ILE B 56 -1 N ILE B 56 O VAL B 61 SHEET 6 C 6 ALA B 35 ALA B 44 -1 N THR B 42 O LEU B 49 SHEET 1 D 8 ALA B 169 MSE B 171 0 SHEET 2 D 8 ALA B 145 HIS B 149 1 N VAL B 148 O ARG B 170 SHEET 3 D 8 VAL B 120 PHE B 124 1 N LEU B 121 O LEU B 147 SHEET 4 D 8 ILE B 183 THR B 186 1 O ILE B 183 N GLY B 122 SHEET 5 D 8 PHE B 205 ALA B 208 1 O GLY B 207 N VAL B 184 SHEET 6 D 8 VAL B 279 LYS B 282 1 O TYR B 281 N VAL B 206 SHEET 7 D 8 ALA B 229 VAL B 232 1 N VAL B 231 O ILE B 280 SHEET 8 D 8 VAL B 258 GLU B 260 1 O VAL B 259 N VAL B 232 LINK C ALA A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C ALA A 7 N MSE A 8 1555 1555 1.32 LINK C MSE A 8 N ILE A 9 1555 1555 1.33 LINK C ALA A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N GLN A 37 1555 1555 1.33 LINK C ARG A 170 N MSE A 171 1555 1555 1.34 LINK C MSE A 171 N ALA A 172 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.35 LINK C MSE B 1 N LEU B 2 1555 1555 1.34 LINK C ALA B 7 N MSE B 8 1555 1555 1.33 LINK C MSE B 8 N ILE B 9 1555 1555 1.33 LINK C ALA B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N GLN B 37 1555 1555 1.33 LINK C ARG B 170 N MSE B 171 1555 1555 1.33 LINK C MSE B 171 N ALA B 172 1555 1555 1.33 SITE 1 AC1 3 ALA A 270 ALA A 271 HOH A 406 SITE 1 AC2 4 GLN A 37 ARG A 38 HOH A 524 HOH B 388 SITE 1 AC3 2 PRO A 116 ARG A 117 SITE 1 AC4 3 GLU A 218 LEU A 219 ASP A 244 SITE 1 AC5 5 ARG A 235 ASP A 255 VAL A 258 GLU A 260 SITE 2 AC5 5 HOH A 525 SITE 1 AC6 8 ILE A 209 SER A 211 SER A 212 ALA A 242 SITE 2 AC6 8 LYS A 282 SER A 283 VAL A 284 HOH A 491 SITE 1 AC7 3 ALA A 24 GLN A 59 ARG A 299 SITE 1 AC8 3 ARG B 39 LYS B 65 ARG B 101 SITE 1 AC9 3 ALA B 35 MSE B 36 HOH B 324 SITE 1 BC1 4 ARG B 115 PRO B 116 ARG B 117 HOH B 418 SITE 1 BC2 3 ALA B 270 ARG B 272 GLN B 273 SITE 1 BC3 4 PRO A 214 THR A 216 ALA B 173 HOH B 495 CRYST1 63.405 50.923 106.999 90.00 100.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015772 0.000000 0.003060 0.00000 SCALE2 0.000000 0.019637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009520 0.00000