HEADER HYDROLASE 07-MAY-09 3HDU TITLE CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE (SYN_01977) FROM TITLE 2 SYNTROPHUS ACIDITROPHICUS SB AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOESTERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTROPHUS ACIDITROPHICUS SB; SOURCE 3 ORGANISM_TAXID: 56780; SOURCE 4 GENE: SYNAS_18640, SYN_01977, YP_461911.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE THIOESTERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3HDU 1 SEQADV REVDAT 5 24-JUL-19 3HDU 1 REMARK LINK REVDAT 4 01-NOV-17 3HDU 1 REMARK REVDAT 3 13-JUL-11 3HDU 1 VERSN REVDAT 2 28-JUL-10 3HDU 1 HEADER TITLE KEYWDS REVDAT 1 02-JUN-09 3HDU 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE THIOESTERASE (YP_461911.1) JRNL TITL 2 FROM SYNTROPHUS ACIDITROPHICUS SB AT 2.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 60.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23000 REMARK 3 B22 (A**2) : -2.23000 REMARK 3 B33 (A**2) : 4.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.635 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3493 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2344 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4719 ; 1.415 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5766 ; 1.211 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 2.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;29.122 ;24.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 637 ;11.051 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ; 8.167 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3907 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 678 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 605 ; 0.131 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2156 ; 0.119 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1613 ; 0.136 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1752 ; 0.066 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.054 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.068 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.061 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2374 ; 0.504 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 936 ; 0.079 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3621 ; 0.854 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 0.353 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1090 ; 0.547 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 9 A 110 5 REMARK 3 1 B 9 B 110 5 REMARK 3 1 C 9 C 110 5 REMARK 3 2 A 111 A 156 6 REMARK 3 2 B 111 B 156 6 REMARK 3 2 C 111 C 156 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 588 ; 0.150 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 588 ; 0.120 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 588 ; 0.170 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1147 ; 0.280 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 1147 ; 0.230 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 1147 ; 0.320 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 588 ; 0.220 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 588 ; 0.200 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 588 ; 0.220 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1147 ; 0.660 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1147 ; 0.480 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 1147 ; 0.650 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 107.4526 79.5737 40.6502 REMARK 3 T TENSOR REMARK 3 T11: -0.2180 T22: -0.1178 REMARK 3 T33: -0.1357 T12: 0.0273 REMARK 3 T13: -0.0777 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 3.9485 L22: 3.7394 REMARK 3 L33: 4.1829 L12: 0.1355 REMARK 3 L13: 0.5222 L23: -0.9847 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.2990 S13: -0.3334 REMARK 3 S21: 0.3489 S22: -0.0309 S23: -0.7175 REMARK 3 S31: 0.0568 S32: 0.3965 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): 101.5738 84.5936 19.5080 REMARK 3 T TENSOR REMARK 3 T11: -0.1566 T22: -0.0243 REMARK 3 T33: -0.1629 T12: 0.0386 REMARK 3 T13: 0.0361 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 2.4612 L22: 4.8539 REMARK 3 L33: 4.9004 L12: -0.0955 REMARK 3 L13: 0.5086 L23: -1.1377 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: 0.6167 S13: -0.1499 REMARK 3 S21: -0.7778 S22: -0.0774 S23: -0.6091 REMARK 3 S31: -0.0338 S32: 0.1914 S33: 0.0185 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 156 REMARK 3 ORIGIN FOR THE GROUP (A): 69.9389 76.0391 24.6742 REMARK 3 T TENSOR REMARK 3 T11: -0.1905 T22: -0.1218 REMARK 3 T33: 0.0595 T12: -0.0196 REMARK 3 T13: -0.1245 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 2.6574 L22: 3.7446 REMARK 3 L33: 8.0383 L12: -0.6797 REMARK 3 L13: -0.1743 L23: 0.8914 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: 0.4156 S13: -0.3642 REMARK 3 S21: -0.4108 S22: -0.1792 S23: 0.8151 REMARK 3 S31: 0.2614 S32: -0.9802 S33: 0.1073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 4 REMARK 4 3HDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97964,0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17799 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.591 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80600 REMARK 200 R SYM FOR SHELL (I) : 0.80600 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0000% MPD, 0.1M CITRATE PH 5.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.80100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.58250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.58250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.70150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.58250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.58250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.90050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.58250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.58250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.70150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.58250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.58250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.90050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.80100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 HEXAMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.60200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 ASN B 3 REMARK 465 PHE B 4 REMARK 465 SER B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 465 GLU B 8 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 PRO C 2 REMARK 465 ASN C 3 REMARK 465 PHE C 4 REMARK 465 SER C 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CD CE NZ REMARK 470 GLU A 21 CD OE1 OE2 REMARK 470 LYS A 32 CD CE NZ REMARK 470 MSE A 90 SE CE REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ARG A 99 CZ NH1 NH2 REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 PHE B 12 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 13 OG REMARK 470 GLU B 21 CD OE1 OE2 REMARK 470 ASN B 26 CG OD1 ND2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 MSE B 90 CG SE CE REMARK 470 ARG B 99 NE CZ NH1 NH2 REMARK 470 LEU B 114 CG CD1 CD2 REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 135 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 17 CG CD OE1 OE2 REMARK 470 GLU C 21 CD OE1 OE2 REMARK 470 LYS C 22 CG CD CE NZ REMARK 470 PHE C 25 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN C 26 CG OD1 ND2 REMARK 470 LYS C 27 CG CD CE NZ REMARK 470 ILE C 28 CG1 CG2 CD1 REMARK 470 LYS C 32 CD CE NZ REMARK 470 ARG C 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 50 CG CD OE1 OE2 REMARK 470 ILE C 52 CG1 CG2 CD1 REMARK 470 LEU C 114 CG CD1 CD2 REMARK 470 ARG C 116 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 126 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 135 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 114 35.73 37.48 REMARK 500 ASN B 26 -31.94 -38.76 REMARK 500 LEU B 114 37.06 38.73 REMARK 500 ASN C 26 -35.11 -39.98 REMARK 500 ILE C 56 50.44 -116.16 REMARK 500 LEU C 110 -60.91 -93.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379820 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HDU A 1 156 UNP Q2LUI2 Q2LUI2_SYNAS 1 156 DBREF 3HDU B 1 156 UNP Q2LUI2 Q2LUI2_SYNAS 1 156 DBREF 3HDU C 1 156 UNP Q2LUI2 Q2LUI2_SYNAS 1 156 SEQADV 3HDU GLY A 0 UNP Q2LUI2 EXPRESSION TAG SEQADV 3HDU GLY B 0 UNP Q2LUI2 EXPRESSION TAG SEQADV 3HDU GLY C 0 UNP Q2LUI2 EXPRESSION TAG SEQRES 1 A 157 GLY MSE PRO ASN PHE SER LYS ASN GLU GLU VAL LEU PHE SEQRES 2 A 157 SER ALA VAL ASN GLU ILE PHE GLU GLU LYS ILE PRO PHE SEQRES 3 A 157 ASN LYS ILE ILE GLY LEU LYS VAL ARG PHE ILE SER PRO SEQRES 4 A 157 GLU GLN VAL LYS LEU SER PHE GLU MSE ARG ASP GLU LEU SEQRES 5 A 157 ILE GLY ASN ALA ILE ARG ARG MSE LEU TYR GLY GLY VAL SEQRES 6 A 157 ILE SER SER ALA ILE ASP MSE THR ALA GLY LEU ALA ALA SEQRES 7 A 157 PHE MSE GLY PHE GLN GLU LYS MSE SER GLY LYS PRO MSE SEQRES 8 A 157 GLU GLU LYS LEU ALA MSE ILE GLY ARG LEU SER THR MSE SEQRES 9 A 157 SER LEU HIS VAL GLU TYR LEU ARG PRO GLY LEU GLY ARG SEQRES 10 A 157 GLU PHE VAL CYS THR GLY TYR ASN VAL ARG THR GLY ASN SEQRES 11 A 157 LYS VAL ALA VAL ILE ARG THR GLU LEU MSE ASN ASP GLN SEQRES 12 A 157 ASP GLU LEU ILE ALA VAL GLY SER VAL SER TYR ILE LEU SEQRES 13 A 157 VAL SEQRES 1 B 157 GLY MSE PRO ASN PHE SER LYS ASN GLU GLU VAL LEU PHE SEQRES 2 B 157 SER ALA VAL ASN GLU ILE PHE GLU GLU LYS ILE PRO PHE SEQRES 3 B 157 ASN LYS ILE ILE GLY LEU LYS VAL ARG PHE ILE SER PRO SEQRES 4 B 157 GLU GLN VAL LYS LEU SER PHE GLU MSE ARG ASP GLU LEU SEQRES 5 B 157 ILE GLY ASN ALA ILE ARG ARG MSE LEU TYR GLY GLY VAL SEQRES 6 B 157 ILE SER SER ALA ILE ASP MSE THR ALA GLY LEU ALA ALA SEQRES 7 B 157 PHE MSE GLY PHE GLN GLU LYS MSE SER GLY LYS PRO MSE SEQRES 8 B 157 GLU GLU LYS LEU ALA MSE ILE GLY ARG LEU SER THR MSE SEQRES 9 B 157 SER LEU HIS VAL GLU TYR LEU ARG PRO GLY LEU GLY ARG SEQRES 10 B 157 GLU PHE VAL CYS THR GLY TYR ASN VAL ARG THR GLY ASN SEQRES 11 B 157 LYS VAL ALA VAL ILE ARG THR GLU LEU MSE ASN ASP GLN SEQRES 12 B 157 ASP GLU LEU ILE ALA VAL GLY SER VAL SER TYR ILE LEU SEQRES 13 B 157 VAL SEQRES 1 C 157 GLY MSE PRO ASN PHE SER LYS ASN GLU GLU VAL LEU PHE SEQRES 2 C 157 SER ALA VAL ASN GLU ILE PHE GLU GLU LYS ILE PRO PHE SEQRES 3 C 157 ASN LYS ILE ILE GLY LEU LYS VAL ARG PHE ILE SER PRO SEQRES 4 C 157 GLU GLN VAL LYS LEU SER PHE GLU MSE ARG ASP GLU LEU SEQRES 5 C 157 ILE GLY ASN ALA ILE ARG ARG MSE LEU TYR GLY GLY VAL SEQRES 6 C 157 ILE SER SER ALA ILE ASP MSE THR ALA GLY LEU ALA ALA SEQRES 7 C 157 PHE MSE GLY PHE GLN GLU LYS MSE SER GLY LYS PRO MSE SEQRES 8 C 157 GLU GLU LYS LEU ALA MSE ILE GLY ARG LEU SER THR MSE SEQRES 9 C 157 SER LEU HIS VAL GLU TYR LEU ARG PRO GLY LEU GLY ARG SEQRES 10 C 157 GLU PHE VAL CYS THR GLY TYR ASN VAL ARG THR GLY ASN SEQRES 11 C 157 LYS VAL ALA VAL ILE ARG THR GLU LEU MSE ASN ASP GLN SEQRES 12 C 157 ASP GLU LEU ILE ALA VAL GLY SER VAL SER TYR ILE LEU SEQRES 13 C 157 VAL MODRES 3HDU MSE A 47 MET SELENOMETHIONINE MODRES 3HDU MSE A 59 MET SELENOMETHIONINE MODRES 3HDU MSE A 71 MET SELENOMETHIONINE MODRES 3HDU MSE A 79 MET SELENOMETHIONINE MODRES 3HDU MSE A 85 MET SELENOMETHIONINE MODRES 3HDU MSE A 90 MET SELENOMETHIONINE MODRES 3HDU MSE A 96 MET SELENOMETHIONINE MODRES 3HDU MSE A 103 MET SELENOMETHIONINE MODRES 3HDU MSE A 139 MET SELENOMETHIONINE MODRES 3HDU MSE B 47 MET SELENOMETHIONINE MODRES 3HDU MSE B 59 MET SELENOMETHIONINE MODRES 3HDU MSE B 71 MET SELENOMETHIONINE MODRES 3HDU MSE B 79 MET SELENOMETHIONINE MODRES 3HDU MSE B 85 MET SELENOMETHIONINE MODRES 3HDU MSE B 90 MET SELENOMETHIONINE MODRES 3HDU MSE B 96 MET SELENOMETHIONINE MODRES 3HDU MSE B 103 MET SELENOMETHIONINE MODRES 3HDU MSE B 139 MET SELENOMETHIONINE MODRES 3HDU MSE C 47 MET SELENOMETHIONINE MODRES 3HDU MSE C 59 MET SELENOMETHIONINE MODRES 3HDU MSE C 71 MET SELENOMETHIONINE MODRES 3HDU MSE C 79 MET SELENOMETHIONINE MODRES 3HDU MSE C 85 MET SELENOMETHIONINE MODRES 3HDU MSE C 90 MET SELENOMETHIONINE MODRES 3HDU MSE C 96 MET SELENOMETHIONINE MODRES 3HDU MSE C 103 MET SELENOMETHIONINE MODRES 3HDU MSE C 139 MET SELENOMETHIONINE HET MSE A 47 8 HET MSE A 59 8 HET MSE A 71 8 HET MSE A 79 8 HET MSE A 85 8 HET MSE A 90 6 HET MSE A 96 8 HET MSE A 103 8 HET MSE A 139 13 HET MSE B 47 8 HET MSE B 59 8 HET MSE B 71 8 HET MSE B 79 8 HET MSE B 85 8 HET MSE B 90 5 HET MSE B 96 8 HET MSE B 103 8 HET MSE B 139 13 HET MSE C 47 8 HET MSE C 59 8 HET MSE C 71 8 HET MSE C 79 8 HET MSE C 85 8 HET MSE C 90 13 HET MSE C 96 8 HET MSE C 103 8 HET MSE C 139 13 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 27(C5 H11 N O2 SE) HELIX 1 1 SER A 5 GLU A 21 1 17 HELIX 2 2 ILE A 23 LYS A 27 5 5 HELIX 3 3 ILE A 56 MSE A 85 1 30 HELIX 4 4 PRO A 89 ILE A 97 1 9 HELIX 5 5 GLU B 9 GLU B 21 1 13 HELIX 6 6 ILE B 23 LYS B 27 5 5 HELIX 7 7 ILE B 56 MSE B 85 1 30 HELIX 8 8 PRO B 89 ILE B 97 1 9 HELIX 9 9 LYS C 6 GLU C 20 1 15 HELIX 10 10 ILE C 23 LYS C 27 5 5 HELIX 11 11 ILE C 56 MSE C 85 1 30 HELIX 12 12 PRO C 89 ILE C 97 1 9 SHEET 1 A12 ILE A 29 ILE A 36 0 SHEET 2 A12 GLN A 40 MSE A 47 -1 O SER A 44 N LYS A 32 SHEET 3 A12 GLU A 117 THR A 127 -1 O PHE A 118 N PHE A 45 SHEET 4 A12 VAL A 131 ASN A 140 -1 O ARG A 135 N TYR A 123 SHEET 5 A12 LEU A 145 LEU A 155 -1 O VAL A 151 N ILE A 134 SHEET 6 A12 LEU A 100 TYR A 109 -1 N MSE A 103 O SER A 152 SHEET 7 A12 LEU B 100 TYR B 109 -1 O VAL B 107 N LEU A 105 SHEET 8 A12 LEU B 145 LEU B 155 -1 O SER B 152 N MSE B 103 SHEET 9 A12 VAL B 131 ASN B 140 -1 N ILE B 134 O VAL B 151 SHEET 10 A12 GLU B 117 THR B 127 -1 N TYR B 123 O ARG B 135 SHEET 11 A12 GLN B 40 MSE B 47 -1 N VAL B 41 O GLY B 122 SHEET 12 A12 ILE B 29 ILE B 36 -1 N GLY B 30 O GLU B 46 SHEET 1 B 6 ILE C 29 ILE C 36 0 SHEET 2 B 6 GLN C 40 MSE C 47 -1 O GLU C 46 N GLY C 30 SHEET 3 B 6 GLU C 117 THR C 127 -1 O PHE C 118 N PHE C 45 SHEET 4 B 6 VAL C 131 ASN C 140 -1 O ARG C 135 N TYR C 123 SHEET 5 B 6 LEU C 145 LEU C 155 -1 O GLY C 149 N THR C 136 SHEET 6 B 6 LEU C 100 TYR C 109 -1 N MSE C 103 O SER C 152 LINK C GLU A 46 N MSE A 47 1555 1555 1.34 LINK C MSE A 47 N ARG A 48 1555 1555 1.33 LINK C ARG A 58 N MSE A 59 1555 1555 1.34 LINK C MSE A 59 N LEU A 60 1555 1555 1.34 LINK C ASP A 70 N MSE A 71 1555 1555 1.34 LINK C MSE A 71 N THR A 72 1555 1555 1.34 LINK C PHE A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N GLY A 80 1555 1555 1.33 LINK C LYS A 84 N MSE A 85 1555 1555 1.34 LINK C MSE A 85 N SER A 86 1555 1555 1.33 LINK C PRO A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N GLU A 91 1555 1555 1.34 LINK C ALA A 95 N MSE A 96 1555 1555 1.34 LINK C MSE A 96 N ILE A 97 1555 1555 1.34 LINK C THR A 102 N MSE A 103 1555 1555 1.33 LINK C MSE A 103 N SER A 104 1555 1555 1.34 LINK C LEU A 138 N MSE A 139 1555 1555 1.34 LINK C MSE A 139 N ASN A 140 1555 1555 1.34 LINK C GLU B 46 N MSE B 47 1555 1555 1.34 LINK C MSE B 47 N ARG B 48 1555 1555 1.33 LINK C ARG B 58 N MSE B 59 1555 1555 1.33 LINK C MSE B 59 N LEU B 60 1555 1555 1.34 LINK C ASP B 70 N MSE B 71 1555 1555 1.33 LINK C MSE B 71 N THR B 72 1555 1555 1.34 LINK C PHE B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N GLY B 80 1555 1555 1.34 LINK C LYS B 84 N MSE B 85 1555 1555 1.34 LINK C MSE B 85 N SER B 86 1555 1555 1.33 LINK C PRO B 89 N MSE B 90 1555 1555 1.34 LINK C MSE B 90 N GLU B 91 1555 1555 1.34 LINK C ALA B 95 N MSE B 96 1555 1555 1.34 LINK C MSE B 96 N ILE B 97 1555 1555 1.34 LINK C THR B 102 N MSE B 103 1555 1555 1.33 LINK C MSE B 103 N SER B 104 1555 1555 1.33 LINK C LEU B 138 N MSE B 139 1555 1555 1.34 LINK C MSE B 139 N ASN B 140 1555 1555 1.34 LINK C GLU C 46 N MSE C 47 1555 1555 1.34 LINK C MSE C 47 N ARG C 48 1555 1555 1.34 LINK C ARG C 58 N MSE C 59 1555 1555 1.33 LINK C MSE C 59 N LEU C 60 1555 1555 1.34 LINK C ASP C 70 N MSE C 71 1555 1555 1.34 LINK C MSE C 71 N THR C 72 1555 1555 1.34 LINK C PHE C 78 N MSE C 79 1555 1555 1.34 LINK C MSE C 79 N GLY C 80 1555 1555 1.33 LINK C LYS C 84 N MSE C 85 1555 1555 1.34 LINK C MSE C 85 N SER C 86 1555 1555 1.33 LINK C PRO C 89 N MSE C 90 1555 1555 1.34 LINK C MSE C 90 N GLU C 91 1555 1555 1.34 LINK C ALA C 95 N MSE C 96 1555 1555 1.34 LINK C MSE C 96 N ILE C 97 1555 1555 1.34 LINK C THR C 102 N MSE C 103 1555 1555 1.33 LINK C MSE C 103 N SER C 104 1555 1555 1.34 LINK C LEU C 138 N MSE C 139 1555 1555 1.34 LINK C MSE C 139 N ASN C 140 1555 1555 1.34 CRYST1 117.165 117.165 71.602 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013966 0.00000