HEADER ISOMERASE 08-MAY-09 3HEE TITLE STRUCTURAL STUDY OF CLOSTRIDIUM THERMOCELLUM RIBOSE-5-PHOSPHATE TITLE 2 ISOMERASE B AND RIBOSE-5-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 GENE: CTHE_2597; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 28A(+) KEYWDS D-RIBOSE PHOSPHATE ISOMERASE, CTRPI B, ISOMERIZATION, RIBOSE-5- KEYWDS 2 PHOSPHATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.W.KANG,J.K.KIM,J.H.JUNG,M.K.HONG REVDAT 3 01-NOV-23 3HEE 1 REMARK REVDAT 2 13-APR-11 3HEE 1 JRNL REVDAT 1 10-NOV-09 3HEE 0 JRNL AUTH J.JUNG,J.K.KIM,S.J.YEOM,Y.J.AHN,D.K.OH,L.W.KANG JRNL TITL CRYSTAL STRUCTURE OF CLOSTRIDIUM THERMOCELLUM JRNL TITL 2 RIBOSE-5-PHOSPHATE ISOMERASE B REVEALS PROPERTIES CRITICAL JRNL TITL 3 FOR FAST ENZYME KINETICS. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 90 517 2011 JRNL REFN ISSN 0175-7598 JRNL PMID 21253719 JRNL DOI 10.1007/S00253-011-3095-8 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 27713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.083 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2302 ; 0.032 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3090 ; 2.192 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.036 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;35.281 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;13.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.438 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1702 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1170 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1592 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.130 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.435 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 1.620 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2286 ; 2.241 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 926 ; 4.113 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 804 ; 5.877 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 16.30 REMARK 200 R MERGE FOR SHELL (I) : 0.09500 REMARK 200 R SYM FOR SHELL (I) : 0.09500 REMARK 200 FOR SHELL : 31.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SWISS-MODEL REMARK 200 STARTING MODEL: PDB ENTRY 2VVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M TRIS, PH7.0, 10% PEG8000, 0.15M REMARK 280 MAGNESIUM CHLORIDE, 0.2M POTASSIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.37733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.18867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.18867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.37733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 200 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 228 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 194 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 216 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 149 REMARK 465 LYS B 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 105 CA ALA B 105 CB 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 31 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 60 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LYS B 23 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 25 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 CYS B 58 CA - CB - SG ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P A 651 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P B 0 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VVR RELATED DB: PDB REMARK 900 USING FOR MOLECULAR REPLACEMENT REMARK 900 RELATED ID: 3HE8 RELATED DB: PDB DBREF 3HEE A 1 149 UNP A3DIL8 A3DIL8_CLOTH 1 149 DBREF 3HEE B 1 149 UNP A3DIL8 A3DIL8_CLOTH 1 149 SEQRES 1 A 149 MET LYS ILE GLY ILE GLY SER ASP HIS GLY GLY TYR ASN SEQRES 2 A 149 LEU LYS ARG GLU ILE ALA ASP PHE LEU LYS LYS ARG GLY SEQRES 3 A 149 TYR GLU VAL ILE ASP PHE GLY THR HIS GLY ASN GLU SER SEQRES 4 A 149 VAL ASP TYR PRO ASP PHE GLY LEU LYS VAL ALA GLU ALA SEQRES 5 A 149 VAL LYS SER GLY GLU CYS ASP ARG GLY ILE VAL ILE CYS SEQRES 6 A 149 GLY THR GLY LEU GLY ILE SER ILE ALA ALA ASN LYS VAL SEQRES 7 A 149 PRO GLY ILE ARG ALA ALA VAL CYS THR ASN SER TYR MET SEQRES 8 A 149 ALA ARG MET SER ARG GLU HIS ASN ASP ALA ASN ILE LEU SEQRES 9 A 149 ALA LEU GLY GLU ARG VAL VAL GLY LEU ASP LEU ALA LEU SEQRES 10 A 149 ASP ILE VAL ASP THR TRP LEU LYS ALA GLU PHE GLN GLY SEQRES 11 A 149 GLY ARG HIS ALA THR ARG VAL GLY LYS ILE GLY GLU ILE SEQRES 12 A 149 GLU LYS LYS TYR SER LYS SEQRES 1 B 149 MET LYS ILE GLY ILE GLY SER ASP HIS GLY GLY TYR ASN SEQRES 2 B 149 LEU LYS ARG GLU ILE ALA ASP PHE LEU LYS LYS ARG GLY SEQRES 3 B 149 TYR GLU VAL ILE ASP PHE GLY THR HIS GLY ASN GLU SER SEQRES 4 B 149 VAL ASP TYR PRO ASP PHE GLY LEU LYS VAL ALA GLU ALA SEQRES 5 B 149 VAL LYS SER GLY GLU CYS ASP ARG GLY ILE VAL ILE CYS SEQRES 6 B 149 GLY THR GLY LEU GLY ILE SER ILE ALA ALA ASN LYS VAL SEQRES 7 B 149 PRO GLY ILE ARG ALA ALA VAL CYS THR ASN SER TYR MET SEQRES 8 B 149 ALA ARG MET SER ARG GLU HIS ASN ASP ALA ASN ILE LEU SEQRES 9 B 149 ALA LEU GLY GLU ARG VAL VAL GLY LEU ASP LEU ALA LEU SEQRES 10 B 149 ASP ILE VAL ASP THR TRP LEU LYS ALA GLU PHE GLN GLY SEQRES 11 B 149 GLY ARG HIS ALA THR ARG VAL GLY LYS ILE GLY GLU ILE SEQRES 12 B 149 GLU LYS LYS TYR SER LYS HET R5P A 651 14 HET R5P B 0 14 HETNAM R5P RIBOSE-5-PHOSPHATE FORMUL 3 R5P 2(C5 H11 O8 P) FORMUL 5 HOH *165(H2 O) HELIX 1 1 GLY A 11 ARG A 25 1 15 HELIX 2 2 ASP A 41 SER A 55 1 15 HELIX 3 3 GLY A 68 LYS A 77 1 10 HELIX 4 4 ASN A 88 HIS A 98 1 11 HELIX 5 5 GLY A 112 ALA A 126 1 15 HELIX 6 6 GLY A 131 SER A 148 1 18 HELIX 7 7 GLY B 11 ARG B 25 1 15 HELIX 8 8 ASP B 41 SER B 55 1 15 HELIX 9 9 GLY B 68 LYS B 77 1 10 HELIX 10 10 ASN B 88 HIS B 98 1 11 HELIX 11 11 GLY B 112 ALA B 126 1 15 HELIX 12 12 GLY B 131 SER B 148 1 18 SHEET 1 A 5 GLU A 28 ASP A 31 0 SHEET 2 A 5 LYS A 2 SER A 7 1 N ILE A 3 O GLU A 28 SHEET 3 A 5 ARG A 60 CYS A 65 1 O ARG A 60 N GLY A 4 SHEET 4 A 5 ILE A 103 GLY A 107 1 O LEU A 104 N VAL A 63 SHEET 5 A 5 ALA A 83 VAL A 85 1 N ALA A 84 O ALA A 105 SHEET 1 B 5 GLU B 28 ASP B 31 0 SHEET 2 B 5 LYS B 2 SER B 7 1 N ILE B 5 O ILE B 30 SHEET 3 B 5 ARG B 60 CYS B 65 1 O ARG B 60 N GLY B 4 SHEET 4 B 5 ILE B 103 GLY B 107 1 O LEU B 104 N VAL B 63 SHEET 5 B 5 ALA B 83 VAL B 85 1 N ALA B 84 O ALA B 105 CISPEP 1 GLY A 33 THR A 34 0 0.68 CISPEP 2 GLY B 33 THR B 34 0 1.33 SITE 1 AC1 16 ASP A 8 HIS A 9 TYR A 42 CYS A 65 SITE 2 AC1 16 GLY A 66 THR A 67 GLY A 70 ARG A 109 SITE 3 AC1 16 HOH A 156 HOH A 191 HOH A 202 HOH A 220 SITE 4 AC1 16 HIS B 98 ASN B 99 ARG B 132 ARG B 136 SITE 1 AC2 15 HIS A 98 ASN A 99 ARG A 132 ARG A 136 SITE 2 AC2 15 ASP B 8 HIS B 9 TYR B 42 CYS B 65 SITE 3 AC2 15 GLY B 66 THR B 67 GLY B 70 ARG B 109 SITE 4 AC2 15 HOH B 155 HOH B 180 HOH B 183 CRYST1 69.381 69.381 153.566 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014413 0.008321 0.000000 0.00000 SCALE2 0.000000 0.016643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006512 0.00000