HEADER OXYGEN STORAGE, OXYGEN TRANSPORT 11-MAY-09 3HF4 TITLE CRYSTAL STRUCTURE OF RAT METHEMOGLOBIN IN R2 STATE CAVEAT 3HF4 LYS B 144 HAS WRONG CHIRALITY AT ATOM CA CHIRALITY ERROR AT CAVEAT 2 3HF4 CA CENTER OF LYS B 144 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA-1/2; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: HEMOGLOBIN ALPHA-1/2 CHAIN, ALPHA-1/2-GLOBIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA-1; COMPND 7 CHAIN: B, F; COMPND 8 SYNONYM: HEMOGLOBIN BETA-1 CHAIN, BETA-1-GLOBIN, HEMOGLOBIN BETA COMPND 9 CHAIN, MAJOR-FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 TISSUE: BLOOD; SOURCE 6 CELL: BLOOD PLASMA; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 9 ORGANISM_COMMON: RAT; SOURCE 10 ORGANISM_TAXID: 10116; SOURCE 11 TISSUE: BLOOD; SOURCE 12 CELL: BLOOD PLASMA KEYWDS HEMOGLOBIN, QUATERNARY STRUCTURE, HEME, RATTUS NORVEGICUS, IRON, KEYWDS 2 METAL-BINDING, OXYGEN TRANSPORT, POLYMORPHISM, TRANSPORT, KEYWDS 3 PHOSPHOPROTEIN, OXYGEN STORAGE EXPDTA X-RAY DIFFRACTION AUTHOR K.NEELAGANDAN,P.SATHYA MOORTHY,M.BALASUBRAMANIAN,M.N.PONNUSWAMY REVDAT 6 01-NOV-23 3HF4 1 REMARK LINK REVDAT 5 15-JAN-20 3HF4 1 CAVEAT REMARK REVDAT 4 20-JUN-18 3HF4 1 AUTHOR JRNL REVDAT 3 31-JAN-18 3HF4 1 REMARK REVDAT 2 01-NOV-17 3HF4 1 REMARK REVDAT 1 19-MAY-10 3HF4 0 JRNL AUTH K.NEELAGANDAN,P.SATHYA MOORTHY,M.BALASUBRAMANIAN, JRNL AUTH 2 M.N.PONNUSWAMY JRNL TITL QUATERNARY STRUCTURAL VARIABILITY IN RAT HEMOGLOBIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 14091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1559 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.441 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.324 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.828 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4677 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6391 ; 1.028 ; 2.055 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 569 ; 4.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;35.086 ;24.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;18.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 6.430 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 677 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3538 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2014 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3182 ; 0.287 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.025 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2886 ; 0.239 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4516 ; 0.435 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2006 ; 0.390 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1867 ; 0.648 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54170 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : AUTOMAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 2.830 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12620 REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.68 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31980 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3DHT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM PHOSPHATE BUFFER, PEG 6000, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.07000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.00750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.07000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.00750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER E 138 N - CA - C ANGL. DEV. = 20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 123.75 73.07 REMARK 500 PRO A 50 -68.70 -27.55 REMARK 500 HIS A 72 49.46 -104.51 REMARK 500 LYS A 139 100.82 70.16 REMARK 500 TYR A 140 -144.16 -143.49 REMARK 500 HIS B 2 -86.23 -57.10 REMARK 500 LEU B 3 89.05 47.57 REMARK 500 PHE B 42 63.73 -101.39 REMARK 500 LEU B 48 35.09 -141.26 REMARK 500 PHE B 85 33.82 -94.37 REMARK 500 HIS B 143 25.57 -47.40 REMARK 500 LYS B 144 -94.72 -53.06 REMARK 500 LEU E 2 121.61 71.86 REMARK 500 HIS E 72 47.97 -108.76 REMARK 500 LYS E 139 97.82 65.35 REMARK 500 TYR E 140 30.91 -146.12 REMARK 500 HIS F 2 -82.32 -74.45 REMARK 500 LEU F 3 107.69 56.99 REMARK 500 PHE F 42 65.12 -115.18 REMARK 500 CYS F 93 -61.52 -97.50 REMARK 500 HIS F 143 74.04 -64.95 REMARK 500 LYS F 144 30.13 -169.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 142 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 142 NA 88.1 REMARK 620 3 HEM A 142 NB 84.0 89.1 REMARK 620 4 HEM A 142 NC 89.2 176.4 88.3 REMARK 620 5 HEM A 142 ND 94.1 91.6 178.0 91.0 REMARK 620 6 HOH A 144 O 171.9 95.4 88.7 87.0 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 147 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 147 NA 95.7 REMARK 620 3 HEM B 147 NB 100.2 88.1 REMARK 620 4 HEM B 147 NC 86.3 178.0 91.1 REMARK 620 5 HEM B 147 ND 83.8 88.6 175.1 92.0 REMARK 620 6 HOH B 149 O 166.1 91.2 92.1 87.0 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM E 142 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 87 NE2 REMARK 620 2 HEM E 142 NA 95.8 REMARK 620 3 HEM E 142 NB 85.7 90.0 REMARK 620 4 HEM E 142 NC 83.0 178.0 88.3 REMARK 620 5 HEM E 142 ND 96.2 90.7 177.9 91.1 REMARK 620 6 HOH E 143 O 163.9 100.1 91.6 81.0 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM F 147 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 92 NE2 REMARK 620 2 HEM F 147 NA 89.7 REMARK 620 3 HEM F 147 NB 88.6 87.8 REMARK 620 4 HEM F 147 NC 81.8 171.2 89.8 REMARK 620 5 HEM F 147 ND 84.2 89.1 172.2 92.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM E 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM F 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DHT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT HEMOGLOBIN IN RR2 STATE DBREF 3HF4 A 1 141 UNP P01946 HBA_RAT 2 142 DBREF 3HF4 B 1 146 UNP P02091 HBB1_RAT 2 147 DBREF 3HF4 E 1 141 UNP P01946 HBA_RAT 2 142 DBREF 3HF4 F 1 146 UNP P02091 HBB1_RAT 2 147 SEQRES 1 A 141 VAL LEU SER ALA ASP ASP LYS THR ASN ILE LYS ASN CYS SEQRES 2 A 141 TRP GLY LYS ILE GLY GLY HIS GLY GLY GLU TYR GLY GLU SEQRES 3 A 141 GLU ALA LEU GLN ARG MET PHE ALA ALA PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE SER HIS ILE ASP VAL SER PRO GLY SER SEQRES 5 A 141 ALA GLN VAL LYS ALA HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU ALA LYS ALA ALA ASP HIS VAL GLU ASP LEU PRO GLY SEQRES 7 A 141 ALA LEU SER THR LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS PHE LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA CYS HIS HIS PRO GLY ASP PHE SEQRES 10 A 141 THR PRO ALA MET HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU THR ASP ALA GLU LYS ALA ALA VAL ASN GLY SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN PRO ASP ASP VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG TYR PHE ASP SER PHE GLY ASP LEU SER SER ALA SER SEQRES 5 B 146 ALA ILE MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL ILE ASN ALA PHE ASN ASP GLY LEU LYS HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA HIS LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN MET ILE VAL ILE VAL LEU GLY HIS HIS SEQRES 10 B 146 LEU GLY LYS GLU PHE THR PRO CYS ALA GLN ALA ALA PHE SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA SER ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 E 141 VAL LEU SER ALA ASP ASP LYS THR ASN ILE LYS ASN CYS SEQRES 2 E 141 TRP GLY LYS ILE GLY GLY HIS GLY GLY GLU TYR GLY GLU SEQRES 3 E 141 GLU ALA LEU GLN ARG MET PHE ALA ALA PHE PRO THR THR SEQRES 4 E 141 LYS THR TYR PHE SER HIS ILE ASP VAL SER PRO GLY SER SEQRES 5 E 141 ALA GLN VAL LYS ALA HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 E 141 LEU ALA LYS ALA ALA ASP HIS VAL GLU ASP LEU PRO GLY SEQRES 7 E 141 ALA LEU SER THR LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 E 141 ARG VAL ASP PRO VAL ASN PHE LYS PHE LEU SER HIS CYS SEQRES 9 E 141 LEU LEU VAL THR LEU ALA CYS HIS HIS PRO GLY ASP PHE SEQRES 10 E 141 THR PRO ALA MET HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 E 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 F 146 VAL HIS LEU THR ASP ALA GLU LYS ALA ALA VAL ASN GLY SEQRES 2 F 146 LEU TRP GLY LYS VAL ASN PRO ASP ASP VAL GLY GLY GLU SEQRES 3 F 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 F 146 ARG TYR PHE ASP SER PHE GLY ASP LEU SER SER ALA SER SEQRES 5 F 146 ALA ILE MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 F 146 LYS VAL ILE ASN ALA PHE ASN ASP GLY LEU LYS HIS LEU SEQRES 7 F 146 ASP ASN LEU LYS GLY THR PHE ALA HIS LEU SER GLU LEU SEQRES 8 F 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 F 146 LEU LEU GLY ASN MET ILE VAL ILE VAL LEU GLY HIS HIS SEQRES 10 F 146 LEU GLY LYS GLU PHE THR PRO CYS ALA GLN ALA ALA PHE SEQRES 11 F 146 GLN LYS VAL VAL ALA GLY VAL ALA SER ALA LEU ALA HIS SEQRES 12 F 146 LYS TYR HIS HET HEM A 142 43 HET HEM B 147 43 HET HEM E 142 43 HET HEM F 147 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 9 HOH *14(H2 O) HELIX 1 1 SER A 3 GLY A 18 1 16 HELIX 2 2 HIS A 20 PHE A 36 1 17 HELIX 3 3 PRO A 37 SER A 44 5 8 HELIX 4 4 SER A 52 HIS A 72 1 21 HELIX 5 5 ASP A 75 LEU A 80 1 6 HELIX 6 6 LEU A 80 HIS A 89 1 10 HELIX 7 7 ASP A 94 HIS A 113 1 20 HELIX 8 8 THR A 118 THR A 137 1 20 HELIX 9 9 THR B 4 GLY B 16 1 13 HELIX 10 10 ASN B 19 TYR B 35 1 17 HELIX 11 11 PRO B 36 GLY B 46 5 11 HELIX 12 12 SER B 50 ASN B 57 1 8 HELIX 13 13 ASN B 57 HIS B 77 1 21 HELIX 14 14 ASN B 80 PHE B 85 1 6 HELIX 15 15 PHE B 85 LYS B 95 1 11 HELIX 16 16 PRO B 100 GLY B 119 1 20 HELIX 17 17 LYS B 120 PHE B 122 5 3 HELIX 18 18 THR B 123 ALA B 142 1 20 HELIX 19 19 SER E 3 GLY E 18 1 16 HELIX 20 20 HIS E 20 PHE E 36 1 17 HELIX 21 21 PRO E 37 SER E 44 5 8 HELIX 22 22 SER E 52 HIS E 72 1 21 HELIX 23 23 ASP E 75 HIS E 89 1 15 HELIX 24 24 PRO E 95 HIS E 113 1 19 HELIX 25 25 THR E 118 THR E 137 1 20 HELIX 26 26 THR F 4 LYS F 17 1 14 HELIX 27 27 ASN F 19 TYR F 35 1 17 HELIX 28 28 PRO F 36 GLY F 46 5 11 HELIX 29 29 SER F 50 ASN F 57 1 8 HELIX 30 30 ASN F 57 HIS F 77 1 21 HELIX 31 31 ASN F 80 PHE F 85 1 6 HELIX 32 32 PHE F 85 ASP F 94 1 10 HELIX 33 33 PRO F 100 GLY F 119 1 20 HELIX 34 34 LYS F 120 PHE F 122 5 3 HELIX 35 35 THR F 123 HIS F 143 1 21 LINK NE2 HIS A 87 FE HEM A 142 1555 1555 2.17 LINK FE HEM A 142 O HOH A 144 1555 1555 1.92 LINK NE2 HIS B 92 FE HEM B 147 1555 1555 2.20 LINK FE HEM B 147 O HOH B 149 1555 1555 1.95 LINK NE2 HIS E 87 FE HEM E 142 1555 1555 2.24 LINK FE HEM E 142 O HOH E 143 1555 1555 1.96 LINK NE2 HIS F 92 FE HEM F 147 1555 1555 2.22 CISPEP 1 LYS B 144 TYR B 145 0 -5.68 CISPEP 2 TYR F 145 HIS F 146 0 3.10 SITE 1 AC1 15 TYR A 42 PHE A 43 HIS A 45 HIS A 58 SITE 2 AC1 15 LYS A 61 LEU A 83 LEU A 86 HIS A 87 SITE 3 AC1 15 LEU A 91 VAL A 93 ASN A 97 PHE A 98 SITE 4 AC1 15 LEU A 101 VAL A 132 HOH A 144 SITE 1 AC2 12 TYR B 41 PHE B 42 HIS B 63 LYS B 66 SITE 2 AC2 12 VAL B 67 LEU B 88 HIS B 92 VAL B 98 SITE 3 AC2 12 ASN B 102 LEU B 106 LEU B 141 HOH B 149 SITE 1 AC3 13 TYR E 42 PHE E 43 HIS E 45 HIS E 58 SITE 2 AC3 13 LYS E 61 LEU E 86 HIS E 87 LEU E 91 SITE 3 AC3 13 VAL E 93 ASN E 97 PHE E 98 LEU E 101 SITE 4 AC3 13 HOH E 143 SITE 1 AC4 13 TYR F 41 PHE F 42 HIS F 63 LYS F 66 SITE 2 AC4 13 VAL F 67 LEU F 88 HIS F 92 LEU F 96 SITE 3 AC4 13 VAL F 98 ASN F 102 PHE F 103 LEU F 106 SITE 4 AC4 13 LEU F 141 CRYST1 94.140 54.015 115.008 90.00 93.80 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010622 0.000000 0.000706 0.00000 SCALE2 0.000000 0.018513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008714 0.00000