data_3HFF # _entry.id 3HFF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HFF pdb_00003hff 10.2210/pdb3hff/pdb RCSB RCSB053068 ? ? WWPDB D_1000053068 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HFF _pdbx_database_status.recvd_initial_deposition_date 2009-05-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saraboji, K.' 1 'Nordlund, A.' 2 'Leinartait, L.' 3 'Oliveberg, M.' 4 'Logan, D.T.' 5 # _citation.id primary _citation.title 'Functional features cause misfolding of the ALS-provoking enzyme SOD1.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 106 _citation.page_first 9667 _citation.page_last 9672 _citation.year 2009 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19497878 _citation.pdbx_database_id_DOI 10.1073/pnas.0812046106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nordlund, A.' 1 ? primary 'Leinartaite, L.' 2 ? primary 'Saraboji, K.' 3 ? primary 'Aisenbrey, C.' 4 ? primary 'Grobner, G.' 5 ? primary 'Zetterstrom, P.' 6 ? primary 'Danielsson, J.' 7 ? primary 'Logan, D.T.' 8 ? primary 'Oliveberg, M.' 9 ? # _cell.entry_id 3HFF _cell.length_a 36.670 _cell.length_b 36.670 _cell.length_c 144.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HFF _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Superoxide dismutase [Cu-Zn]' 15636.213 1 1.15.1.1 'C6A, C111A, F50E, G51E, H63S, H71S, H80S, D83S' ? ? 2 non-polymer syn 'ZINC ION' 65.409 5 ? ? ? ? 3 water nat water 18.015 28 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CU/ZN SUPEROXIDE DISMUTASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSAGPSFNPLSRKSGGPKDEERS VGSLGNVTADKDGVADVSIEDSVISLSGDHAIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ ; _entity_poly.pdbx_seq_one_letter_code_can ;ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSAGPSFNPLSRKSGGPKDEERS VGSLGNVTADKDGVADVSIEDSVISLSGDHAIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 THR n 1 3 LYS n 1 4 ALA n 1 5 VAL n 1 6 ALA n 1 7 VAL n 1 8 LEU n 1 9 LYS n 1 10 GLY n 1 11 ASP n 1 12 GLY n 1 13 PRO n 1 14 VAL n 1 15 GLN n 1 16 GLY n 1 17 ILE n 1 18 ILE n 1 19 ASN n 1 20 PHE n 1 21 GLU n 1 22 GLN n 1 23 LYS n 1 24 GLU n 1 25 SER n 1 26 ASN n 1 27 GLY n 1 28 PRO n 1 29 VAL n 1 30 LYS n 1 31 VAL n 1 32 TRP n 1 33 GLY n 1 34 SER n 1 35 ILE n 1 36 LYS n 1 37 GLY n 1 38 LEU n 1 39 THR n 1 40 GLU n 1 41 GLY n 1 42 LEU n 1 43 HIS n 1 44 GLY n 1 45 PHE n 1 46 HIS n 1 47 VAL n 1 48 HIS n 1 49 GLU n 1 50 GLU n 1 51 GLU n 1 52 ASP n 1 53 ASN n 1 54 THR n 1 55 ALA n 1 56 GLY n 1 57 CYS n 1 58 THR n 1 59 SER n 1 60 ALA n 1 61 GLY n 1 62 PRO n 1 63 SER n 1 64 PHE n 1 65 ASN n 1 66 PRO n 1 67 LEU n 1 68 SER n 1 69 ARG n 1 70 LYS n 1 71 SER n 1 72 GLY n 1 73 GLY n 1 74 PRO n 1 75 LYS n 1 76 ASP n 1 77 GLU n 1 78 GLU n 1 79 ARG n 1 80 SER n 1 81 VAL n 1 82 GLY n 1 83 SER n 1 84 LEU n 1 85 GLY n 1 86 ASN n 1 87 VAL n 1 88 THR n 1 89 ALA n 1 90 ASP n 1 91 LYS n 1 92 ASP n 1 93 GLY n 1 94 VAL n 1 95 ALA n 1 96 ASP n 1 97 VAL n 1 98 SER n 1 99 ILE n 1 100 GLU n 1 101 ASP n 1 102 SER n 1 103 VAL n 1 104 ILE n 1 105 SER n 1 106 LEU n 1 107 SER n 1 108 GLY n 1 109 ASP n 1 110 HIS n 1 111 ALA n 1 112 ILE n 1 113 ILE n 1 114 GLY n 1 115 ARG n 1 116 THR n 1 117 LEU n 1 118 VAL n 1 119 VAL n 1 120 HIS n 1 121 GLU n 1 122 LYS n 1 123 ALA n 1 124 ASP n 1 125 ASP n 1 126 LEU n 1 127 GLY n 1 128 LYS n 1 129 GLY n 1 130 GLY n 1 131 ASN n 1 132 GLU n 1 133 GLU n 1 134 SER n 1 135 THR n 1 136 LYS n 1 137 THR n 1 138 GLY n 1 139 ASN n 1 140 ALA n 1 141 GLY n 1 142 SER n 1 143 ARG n 1 144 LEU n 1 145 ALA n 1 146 CYS n 1 147 GLY n 1 148 VAL n 1 149 ILE n 1 150 GLY n 1 151 ILE n 1 152 ALA n 1 153 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SOD1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21/DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SODC_HUMAN _struct_ref.pdbx_db_accession P00441 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERH VGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HFF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00441 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 153 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3HFF ALA A 6 ? UNP P00441 CYS 7 'engineered mutation' 6 1 1 3HFF GLU A 50 ? UNP P00441 PHE 51 'engineered mutation' 50 2 1 3HFF GLU A 51 ? UNP P00441 GLY 52 'engineered mutation' 51 3 1 3HFF SER A 63 ? UNP P00441 HIS 64 'engineered mutation' 63 4 1 3HFF SER A 71 ? UNP P00441 HIS 72 'engineered mutation' 71 5 1 3HFF SER A 80 ? UNP P00441 HIS 81 'engineered mutation' 80 6 1 3HFF SER A 83 ? UNP P00441 ASP 84 'engineered mutation' 83 7 1 3HFF ALA A 111 ? UNP P00441 CYS 112 'engineered mutation' 111 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3HFF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_percent_sol 31.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '16% PEG 6000, 10% Jeffamine M-600 (pH 7.0), 0.1M Tris-HCl (pH 8.0), 0.1M ZnCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-10-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9083 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I911-5' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I911-5 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9083 # _reflns.entry_id 3HFF _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 5811 _reflns.number_all 5811 _reflns.percent_possible_obs 93.2 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.35 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.3 _reflns_shell.percent_possible_all 82.7 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.17 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 623 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3HFF _refine.ls_number_reflns_obs 5250 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.13 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 93.47 _refine.ls_R_factor_obs 0.22914 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22363 _refine.ls_R_factor_R_free 0.28087 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.6 _refine.ls_number_reflns_R_free 559 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.B_iso_mean 23.170 _refine.aniso_B[1][1] -0.02 _refine.aniso_B[2][2] -0.02 _refine.aniso_B[3][3] 0.03 _refine.aniso_B[1][2] -0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.355 _refine.pdbx_overall_ESU_R_Free 0.263 _refine.overall_SU_ML 0.217 _refine.overall_SU_B 16.876 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 818 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 851 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 17.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.021 ? 828 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 529 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.397 1.950 ? 1116 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.743 3.000 ? 1310 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.839 5.000 ? 112 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 47.527 26.250 ? 32 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.798 15.000 ? 136 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.184 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 131 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 942 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 143 'X-RAY DIFFRACTION' ? r_mcbond_it 0.624 1.500 ? 556 'X-RAY DIFFRACTION' ? r_mcbond_other 0.126 1.500 ? 246 'X-RAY DIFFRACTION' ? r_mcangle_it 1.126 2.000 ? 880 'X-RAY DIFFRACTION' ? r_scbond_it 1.698 3.000 ? 272 'X-RAY DIFFRACTION' ? r_scangle_it 2.874 4.500 ? 236 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.256 _refine_ls_shell.number_reflns_R_work 329 _refine_ls_shell.R_factor_R_work 0.306 _refine_ls_shell.percent_reflns_obs 82.05 _refine_ls_shell.R_factor_R_free 0.400 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HFF _struct.title 'Monomeric human Cu,Zn Superoxide dismutase without Zn ligands' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HFF _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;OXIDOREDUCTASE, SOD1, MONOMERIC MUTANT, Amyotrophic lateral sclerosis, Antioxidant, Disease mutation, Disulfide bond, Metal-binding, Neurodegeneration, Phosphoprotein ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The oligomeric state predicted by PISA is a putative dimer.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ALA 1 N ? ? ? 1_555 D ZN . ZN ? ? A ALA 1 A ZN 156 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc2 metalc ? ? A ALA 1 O ? ? ? 1_555 D ZN . ZN ? ? A ALA 1 A ZN 156 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc3 metalc ? ? A HIS 46 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 46 A ZN 154 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc4 metalc ? ? A ASP 90 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 90 A ZN 155 1_555 ? ? ? ? ? ? ? 1.813 ? ? metalc5 metalc ? ? A HIS 110 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 110 A ZN 158 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc6 metalc ? ? A HIS 120 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 120 A ZN 154 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc7 metalc ? ? A ASP 125 OD2 ? ? ? 1_555 F ZN . ZN ? ? A ASP 125 A ZN 159 1_555 ? ? ? ? ? ? ? 1.993 ? ? metalc8 metalc ? ? B ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 154 A HOH 211 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc9 metalc ? ? C ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 155 A HOH 208 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc10 metalc ? ? D ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 156 A HOH 206 1_555 ? ? ? ? ? ? ? 2.151 ? ? metalc11 metalc ? ? D ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 156 A HOH 209 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc12 metalc ? ? F ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 159 A HOH 219 1_555 ? ? ? ? ? ? ? 1.898 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 82 ? ALA A 89 ? GLY A 82 ALA A 89 A 2 GLY A 41 ? VAL A 47 ? GLY A 41 VAL A 47 A 3 THR A 116 ? HIS A 120 ? THR A 116 HIS A 120 A 4 ARG A 143 ? VAL A 148 ? ARG A 143 VAL A 148 A 5 THR A 2 ? GLY A 10 ? THR A 2 GLY A 10 A 6 GLN A 15 ? GLN A 22 ? GLN A 15 GLN A 22 A 7 VAL A 29 ? LYS A 36 ? VAL A 29 LYS A 36 A 8 ALA A 95 ? ASP A 101 ? ALA A 95 ASP A 101 B 1 GLY A 82 ? ALA A 89 ? GLY A 82 ALA A 89 B 2 GLY A 41 ? VAL A 47 ? GLY A 41 VAL A 47 B 3 THR A 116 ? HIS A 120 ? THR A 116 HIS A 120 B 4 ARG A 143 ? VAL A 148 ? ARG A 143 VAL A 148 B 5 THR A 2 ? GLY A 10 ? THR A 2 GLY A 10 B 6 GLY A 150 ? ILE A 151 ? GLY A 150 ILE A 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 89 ? O ALA A 89 N GLY A 41 ? N GLY A 41 A 2 3 N GLY A 44 ? N GLY A 44 O HIS A 120 ? O HIS A 120 A 3 4 N LEU A 117 ? N LEU A 117 O GLY A 147 ? O GLY A 147 A 4 5 O CYS A 146 ? O CYS A 146 N LYS A 9 ? N LYS A 9 A 5 6 N LEU A 8 ? N LEU A 8 O GLY A 16 ? O GLY A 16 A 6 7 N ASN A 19 ? N ASN A 19 O TRP A 32 ? O TRP A 32 A 7 8 N GLY A 33 ? N GLY A 33 O VAL A 97 ? O VAL A 97 B 1 2 O ALA A 89 ? O ALA A 89 N GLY A 41 ? N GLY A 41 B 2 3 N GLY A 44 ? N GLY A 44 O HIS A 120 ? O HIS A 120 B 3 4 N LEU A 117 ? N LEU A 117 O GLY A 147 ? O GLY A 147 B 4 5 O CYS A 146 ? O CYS A 146 N LYS A 9 ? N LYS A 9 B 5 6 N VAL A 5 ? N VAL A 5 O GLY A 150 ? O GLY A 150 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 154 ? 4 'BINDING SITE FOR RESIDUE ZN A 154' AC2 Software A ZN 155 ? 5 'BINDING SITE FOR RESIDUE ZN A 155' AC3 Software A ZN 156 ? 4 'BINDING SITE FOR RESIDUE ZN A 156' AC4 Software A ZN 158 ? 4 'BINDING SITE FOR RESIDUE ZN A 158' AC5 Software A ZN 159 ? 3 'BINDING SITE FOR RESIDUE ZN A 159' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 46 ? HIS A 46 . ? 1_555 ? 2 AC1 4 HIS A 120 ? HIS A 120 . ? 1_555 ? 3 AC1 4 HOH G . ? HOH A 211 . ? 1_555 ? 4 AC1 4 HOH G . ? HOH A 212 . ? 1_555 ? 5 AC2 5 ASP A 90 ? ASP A 90 . ? 1_555 ? 6 AC2 5 ASP A 92 ? ASP A 92 . ? 1_555 ? 7 AC2 5 HOH G . ? HOH A 204 . ? 4_545 ? 8 AC2 5 HOH G . ? HOH A 207 . ? 1_555 ? 9 AC2 5 HOH G . ? HOH A 208 . ? 1_555 ? 10 AC3 4 ALA A 1 ? ALA A 1 . ? 1_555 ? 11 AC3 4 ASP A 96 ? ASP A 96 . ? 4_655 ? 12 AC3 4 HOH G . ? HOH A 206 . ? 1_555 ? 13 AC3 4 HOH G . ? HOH A 209 . ? 1_555 ? 14 AC4 4 ASP A 11 ? ASP A 11 . ? 1_565 ? 15 AC4 4 HIS A 110 ? HIS A 110 . ? 1_555 ? 16 AC4 4 HOH G . ? HOH A 220 . ? 1_565 ? 17 AC4 4 HOH G . ? HOH A 222 . ? 1_555 ? 18 AC5 3 ASP A 125 ? ASP A 125 . ? 1_555 ? 19 AC5 3 HOH G . ? HOH A 216 . ? 1_555 ? 20 AC5 3 HOH G . ? HOH A 219 . ? 1_555 ? # _database_PDB_matrix.entry_id 3HFF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HFF _atom_sites.fract_transf_matrix[1][1] 0.027270 _atom_sites.fract_transf_matrix[1][2] 0.015744 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031489 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006926 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLU 51 51 ? ? ? A . n A 1 52 ASP 52 52 ? ? ? A . n A 1 53 ASN 53 53 ? ? ? A . n A 1 54 THR 54 54 ? ? ? A . n A 1 55 ALA 55 55 ? ? ? A . n A 1 56 GLY 56 56 ? ? ? A . n A 1 57 CYS 57 57 ? ? ? A . n A 1 58 THR 58 58 ? ? ? A . n A 1 59 SER 59 59 ? ? ? A . n A 1 60 ALA 60 60 ? ? ? A . n A 1 61 GLY 61 61 ? ? ? A . n A 1 62 PRO 62 62 ? ? ? A . n A 1 63 SER 63 63 ? ? ? A . n A 1 64 PHE 64 64 ? ? ? A . n A 1 65 ASN 65 65 ? ? ? A . n A 1 66 PRO 66 66 ? ? ? A . n A 1 67 LEU 67 67 ? ? ? A . n A 1 68 SER 68 68 ? ? ? A . n A 1 69 ARG 69 69 ? ? ? A . n A 1 70 LYS 70 70 ? ? ? A . n A 1 71 SER 71 71 ? ? ? A . n A 1 72 GLY 72 72 ? ? ? A . n A 1 73 GLY 73 73 ? ? ? A . n A 1 74 PRO 74 74 ? ? ? A . n A 1 75 LYS 75 75 ? ? ? A . n A 1 76 ASP 76 76 ? ? ? A . n A 1 77 GLU 77 77 ? ? ? A . n A 1 78 GLU 78 78 ? ? ? A . n A 1 79 ARG 79 79 ? ? ? A . n A 1 80 SER 80 80 ? ? ? A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 HIS 110 110 110 HIS HIS A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 GLU 132 132 ? ? ? A . n A 1 133 GLU 133 133 ? ? ? A . n A 1 134 SER 134 134 ? ? ? A . n A 1 135 THR 135 135 ? ? ? A . n A 1 136 LYS 136 136 ? ? ? A . n A 1 137 THR 137 137 ? ? ? A . n A 1 138 GLY 138 138 ? ? ? A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 CYS 146 146 146 CYS CYS A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 GLN 153 153 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 154 154 ZN ZN A . C 2 ZN 1 155 155 ZN ZN A . D 2 ZN 1 156 156 ZN ZN A . E 2 ZN 1 158 158 ZN ZN A . F 2 ZN 1 159 159 ZN ZN A . G 3 HOH 1 201 201 HOH HOH A . G 3 HOH 2 202 202 HOH HOH A . G 3 HOH 3 203 203 HOH HOH A . G 3 HOH 4 204 204 HOH HOH A . G 3 HOH 5 205 205 HOH HOH A . G 3 HOH 6 206 206 HOH HOH A . G 3 HOH 7 207 207 HOH HOH A . G 3 HOH 8 208 208 HOH HOH A . G 3 HOH 9 209 209 HOH HOH A . G 3 HOH 10 210 210 HOH HOH A . G 3 HOH 11 211 211 HOH HOH A . G 3 HOH 12 212 212 HOH HOH A . G 3 HOH 13 213 213 HOH HOH A . G 3 HOH 14 214 214 HOH HOH A . G 3 HOH 15 215 215 HOH HOH A . G 3 HOH 16 216 216 HOH HOH A . G 3 HOH 17 217 217 HOH HOH A . G 3 HOH 18 218 218 HOH HOH A . G 3 HOH 19 219 219 HOH HOH A . G 3 HOH 20 220 220 HOH HOH A . G 3 HOH 21 221 221 HOH HOH A . G 3 HOH 22 222 222 HOH HOH A . G 3 HOH 23 223 223 HOH HOH A . G 3 HOH 24 224 224 HOH HOH A . G 3 HOH 25 225 225 HOH HOH A . G 3 HOH 26 226 226 HOH HOH A . G 3 HOH 27 227 227 HOH HOH A . G 3 HOH 28 228 228 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 1,2 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1130 ? 2 MORE -6 ? 2 'SSA (A^2)' 11820 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 48.1300000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A ALA 1 ? A ALA 1 ? 1_555 ZN ? D ZN . ? A ZN 156 ? 1_555 O ? A ALA 1 ? A ALA 1 ? 1_555 77.7 ? 2 N ? A ALA 1 ? A ALA 1 ? 1_555 ZN ? D ZN . ? A ZN 156 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 87.1 ? 3 O ? A ALA 1 ? A ALA 1 ? 1_555 ZN ? D ZN . ? A ZN 156 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 163.7 ? 4 N ? A ALA 1 ? A ALA 1 ? 1_555 ZN ? D ZN . ? A ZN 156 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 108.8 ? 5 O ? A ALA 1 ? A ALA 1 ? 1_555 ZN ? D ZN . ? A ZN 156 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 94.6 ? 6 O ? G HOH . ? A HOH 206 ? 1_555 ZN ? D ZN . ? A ZN 156 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 95.9 ? 7 ND1 ? A HIS 46 ? A HIS 46 ? 1_555 ZN ? B ZN . ? A ZN 154 ? 1_555 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 98.8 ? 8 ND1 ? A HIS 46 ? A HIS 46 ? 1_555 ZN ? B ZN . ? A ZN 154 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 95.7 ? 9 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 ZN ? B ZN . ? A ZN 154 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 104.8 ? 10 OD2 ? A ASP 90 ? A ASP 90 ? 1_555 ZN ? C ZN . ? A ZN 155 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 111.9 ? 11 OD2 ? A ASP 125 ? A ASP 125 ? 1_555 ZN ? F ZN . ? A ZN 159 ? 1_555 O ? G HOH . ? A HOH 219 ? 1_555 114.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 15.1292 _pdbx_refine_tls.origin_y -15.9840 _pdbx_refine_tls.origin_z 10.2232 _pdbx_refine_tls.T[1][1] 0.0363 _pdbx_refine_tls.T[2][2] 0.0721 _pdbx_refine_tls.T[3][3] 0.0888 _pdbx_refine_tls.T[1][2] -0.0429 _pdbx_refine_tls.T[1][3] 0.0156 _pdbx_refine_tls.T[2][3] -0.0026 _pdbx_refine_tls.L[1][1] 2.2575 _pdbx_refine_tls.L[2][2] 3.2447 _pdbx_refine_tls.L[3][3] 5.6545 _pdbx_refine_tls.L[1][2] -0.1098 _pdbx_refine_tls.L[1][3] 0.5447 _pdbx_refine_tls.L[2][3] -1.4004 _pdbx_refine_tls.S[1][1] -0.0025 _pdbx_refine_tls.S[2][2] -0.0899 _pdbx_refine_tls.S[3][3] 0.0925 _pdbx_refine_tls.S[1][2] -0.1628 _pdbx_refine_tls.S[1][3] 0.0625 _pdbx_refine_tls.S[2][3] -0.1844 _pdbx_refine_tls.S[2][1] -0.0368 _pdbx_refine_tls.S[3][1] -0.1830 _pdbx_refine_tls.S[3][2] 0.2118 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 152 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0044 ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 110 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 224 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 110 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -118.07 _pdbx_validate_torsion.psi 50.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 122 ? CD ? A LYS 122 CD 2 1 Y 1 A LYS 122 ? CE ? A LYS 122 CE 3 1 Y 1 A LYS 122 ? NZ ? A LYS 122 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 51 ? A GLU 51 2 1 Y 1 A ASP 52 ? A ASP 52 3 1 Y 1 A ASN 53 ? A ASN 53 4 1 Y 1 A THR 54 ? A THR 54 5 1 Y 1 A ALA 55 ? A ALA 55 6 1 Y 1 A GLY 56 ? A GLY 56 7 1 Y 1 A CYS 57 ? A CYS 57 8 1 Y 1 A THR 58 ? A THR 58 9 1 Y 1 A SER 59 ? A SER 59 10 1 Y 1 A ALA 60 ? A ALA 60 11 1 Y 1 A GLY 61 ? A GLY 61 12 1 Y 1 A PRO 62 ? A PRO 62 13 1 Y 1 A SER 63 ? A SER 63 14 1 Y 1 A PHE 64 ? A PHE 64 15 1 Y 1 A ASN 65 ? A ASN 65 16 1 Y 1 A PRO 66 ? A PRO 66 17 1 Y 1 A LEU 67 ? A LEU 67 18 1 Y 1 A SER 68 ? A SER 68 19 1 Y 1 A ARG 69 ? A ARG 69 20 1 Y 1 A LYS 70 ? A LYS 70 21 1 Y 1 A SER 71 ? A SER 71 22 1 Y 1 A GLY 72 ? A GLY 72 23 1 Y 1 A GLY 73 ? A GLY 73 24 1 Y 1 A PRO 74 ? A PRO 74 25 1 Y 1 A LYS 75 ? A LYS 75 26 1 Y 1 A ASP 76 ? A ASP 76 27 1 Y 1 A GLU 77 ? A GLU 77 28 1 Y 1 A GLU 78 ? A GLU 78 29 1 Y 1 A ARG 79 ? A ARG 79 30 1 Y 1 A SER 80 ? A SER 80 31 1 Y 1 A GLU 132 ? A GLU 132 32 1 Y 1 A GLU 133 ? A GLU 133 33 1 Y 1 A SER 134 ? A SER 134 34 1 Y 1 A THR 135 ? A THR 135 35 1 Y 1 A LYS 136 ? A LYS 136 36 1 Y 1 A THR 137 ? A THR 137 37 1 Y 1 A GLY 138 ? A GLY 138 38 1 Y 1 A GLN 153 ? A GLN 153 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH #