HEADER HYDROLASE 13-MAY-09 3HFW TITLE CRYSTAL STRUCTURE OF HUMAN ADP-RIBOSYLHYDROLASE 1 (HARH1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ADP-RIBOSYLARGININE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP-RIBOSYLARGININE HYDROLASE, ADP-RIBOSE-L-ARGININE COMPND 5 CLEAVING ENZYME; COMPND 6 EC: 3.2.2.19 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS ALL ALPHA-HELICAL, HYDROLASE, MAGNESIUM EXPDTA X-RAY DIFFRACTION AUTHOR C.MUELLER-DIECKMANN,M.S.WEISS,J.MUELLER-DIECKMANN,F.KOCH-NOLTE REVDAT 4 21-FEB-24 3HFW 1 REMARK REVDAT 3 04-SEP-19 3HFW 1 REMARK REVDAT 2 13-JUL-11 3HFW 1 VERSN REVDAT 1 26-MAY-10 3HFW 0 JRNL AUTH F.KOCH-NOLTE,J.MUELLER-DIECKMANN,M.S.WEISS, JRNL AUTH 2 C.MUELLER-DIECKMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN ADP-RIBOSYLHYDROLASE 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.15000 REMARK 3 B22 (A**2) : -1.25000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.007 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2895 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1941 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3929 ; 1.579 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4700 ; 0.997 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 8.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;36.679 ;23.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;14.796 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.799 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3273 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1764 ; 0.851 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 738 ; 0.224 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2790 ; 1.563 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 3.798 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1138 ; 5.802 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9549 12.5936 16.7918 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: 0.0612 REMARK 3 T33: 0.0412 T12: 0.0152 REMARK 3 T13: 0.0090 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.1906 L22: 2.1169 REMARK 3 L33: 1.8092 L12: 0.5071 REMARK 3 L13: -0.4436 L23: -0.2226 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.0245 S13: 0.0522 REMARK 3 S21: -0.0323 S22: -0.0011 S23: 0.0016 REMARK 3 S31: -0.0337 S32: 0.0796 S33: -0.0271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8505 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26290 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 29.90 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM LI-ACETATE, 25% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.64000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.17000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.17000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.64000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 113 N - CA - C ANGL. DEV. = 22.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 54 -168.81 -110.36 REMARK 500 PHE A 249 47.59 -146.01 REMARK 500 SER A 264 18.01 -141.42 REMARK 500 TYR A 328 -17.08 -144.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 112 GLY A 113 -122.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 359 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 24 O REMARK 620 2 GLU A 25 O 71.1 REMARK 620 3 LEU A 27 O 83.2 90.3 REMARK 620 4 HIS A 299 O 119.5 167.1 98.1 REMARK 620 5 GLY A 301 O 140.7 76.0 118.2 91.3 REMARK 620 6 SER A 303 OG 83.5 95.1 163.2 79.6 78.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 361 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 54 OG REMARK 620 2 ASP A 55 OD1 86.1 REMARK 620 3 ASP A 56 OD2 81.8 86.2 REMARK 620 4 ASP A 304 OD2 85.5 170.2 97.7 REMARK 620 5 HOH A 480 O 92.6 83.6 168.6 91.7 REMARK 620 6 HOH A 481 O 172.3 94.6 90.6 94.4 95.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 361 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FOZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ADP-RIBOSYLHYDROALSE 3 (HARH3) DBREF 3HFW A 1 357 UNP P54922 ADPRH_HUMAN 1 357 SEQRES 1 A 357 MET GLU LYS TYR VAL ALA ALA MET VAL LEU SER ALA ALA SEQRES 2 A 357 GLY ASP ALA LEU GLY TYR TYR ASN GLY LYS TRP GLU PHE SEQRES 3 A 357 LEU GLN ASP GLY GLU LYS ILE HIS ARG GLN LEU ALA GLN SEQRES 4 A 357 LEU GLY GLY LEU ASP ALA LEU ASP VAL GLY ARG TRP ARG SEQRES 5 A 357 VAL SER ASP ASP THR VAL MET HIS LEU ALA THR ALA GLU SEQRES 6 A 357 ALA LEU VAL GLU ALA GLY LYS ALA PRO LYS LEU THR GLN SEQRES 7 A 357 LEU TYR TYR LEU LEU ALA LYS HIS TYR GLN ASP CYS MET SEQRES 8 A 357 GLU ASP MET ASP GLY ARG ALA PRO GLY GLY ALA SER VAL SEQRES 9 A 357 HIS ASN ALA MET GLN LEU LYS PRO GLY LYS PRO ASN GLY SEQRES 10 A 357 TRP ARG ILE PRO PHE ASN SER HIS GLU GLY GLY CYS GLY SEQRES 11 A 357 ALA ALA MET ARG ALA MET CYS ILE GLY LEU ARG PHE PRO SEQRES 12 A 357 HIS HIS SER GLN LEU ASP THR LEU ILE GLN VAL SER ILE SEQRES 13 A 357 GLU SER GLY ARG MET THR HIS HIS HIS PRO THR GLY TYR SEQRES 14 A 357 LEU GLY ALA LEU ALA SER ALA LEU PHE THR ALA TYR ALA SEQRES 15 A 357 VAL ASN SER ARG PRO PRO LEU GLN TRP GLY LYS GLY LEU SEQRES 16 A 357 MET GLU LEU LEU PRO GLU ALA LYS LYS TYR ILE VAL GLN SEQRES 17 A 357 SER GLY TYR PHE VAL GLU GLU ASN LEU GLN HIS TRP SER SEQRES 18 A 357 TYR PHE GLN THR LYS TRP GLU ASN TYR LEU LYS LEU ARG SEQRES 19 A 357 GLY ILE LEU ASP GLY GLU SER ALA PRO THR PHE PRO GLU SEQRES 20 A 357 SER PHE GLY VAL LYS GLU ARG ASP GLN PHE TYR THR SER SEQRES 21 A 357 LEU SER TYR SER GLY TRP GLY GLY SER SER GLY HIS ASP SEQRES 22 A 357 ALA PRO MET ILE ALA TYR ASP ALA VAL LEU ALA ALA GLY SEQRES 23 A 357 ASP SER TRP LYS GLU LEU ALA HIS ARG ALA PHE PHE HIS SEQRES 24 A 357 GLY GLY ASP SER ASP SER THR ALA ALA ILE ALA GLY CYS SEQRES 25 A 357 TRP TRP GLY VAL MET TYR GLY PHE LYS GLY VAL SER PRO SEQRES 26 A 357 SER ASN TYR GLU LYS LEU GLU TYR ARG ASN ARG LEU GLU SEQRES 27 A 357 GLU THR ALA ARG ALA LEU TYR SER LEU GLY SER LYS GLU SEQRES 28 A 357 ASP THR VAL ILE SER LEU HET ADP A 358 27 HET K A 359 1 HET CL A 360 1 HET MG A 361 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 K K 1+ FORMUL 4 CL CL 1- FORMUL 5 MG MG 2+ FORMUL 6 HOH *130(H2 O) HELIX 1 1 MET A 1 TYR A 20 1 20 HELIX 2 2 ASP A 29 LEU A 40 1 12 HELIX 3 3 GLY A 42 LEU A 46 5 5 HELIX 4 4 ASP A 47 TRP A 51 5 5 HELIX 5 5 SER A 54 GLY A 71 1 18 HELIX 6 6 LYS A 75 MET A 91 1 17 HELIX 7 7 GLU A 92 MET A 94 5 3 HELIX 8 8 GLY A 100 LEU A 110 1 11 HELIX 9 9 ALA A 131 ALA A 135 5 5 HELIX 10 10 MET A 136 PHE A 142 1 7 HELIX 11 11 HIS A 144 SER A 146 5 3 HELIX 12 12 GLN A 147 MET A 161 1 15 HELIX 13 13 HIS A 165 ASN A 184 1 20 HELIX 14 14 PRO A 187 LEU A 189 5 3 HELIX 15 15 GLN A 190 GLY A 210 1 21 HELIX 16 16 PHE A 212 TRP A 220 1 9 HELIX 17 17 TRP A 220 GLY A 235 1 16 HELIX 18 18 GLY A 250 SER A 262 1 13 HELIX 19 19 HIS A 272 GLY A 286 1 15 HELIX 20 20 SER A 288 PHE A 297 1 10 HELIX 21 21 ASP A 302 GLY A 319 1 18 HELIX 22 22 SER A 324 TYR A 328 5 5 HELIX 23 23 TYR A 333 SER A 349 1 17 LINK O TRP A 24 K K A 359 1555 1555 2.65 LINK O GLU A 25 K K A 359 1555 1555 2.78 LINK O LEU A 27 K K A 359 1555 1555 2.73 LINK OG SER A 54 MG MG A 361 1555 1555 2.20 LINK OD1 ASP A 55 MG MG A 361 1555 1555 2.11 LINK OD2 ASP A 56 MG MG A 361 1555 1555 1.94 LINK O HIS A 299 K K A 359 1555 1555 2.59 LINK O GLY A 301 K K A 359 1555 1555 2.70 LINK OG SER A 303 K K A 359 1555 1555 2.73 LINK OD2 ASP A 304 MG MG A 361 1555 1555 1.97 LINK MG MG A 361 O HOH A 480 1555 1555 2.11 LINK MG MG A 361 O HOH A 481 1555 1555 2.14 SITE 1 AC1 19 LYS A 85 GLY A 100 GLY A 101 ALA A 102 SITE 2 AC1 19 SER A 103 SER A 124 HIS A 125 GLY A 127 SITE 3 AC1 19 GLY A 128 CYS A 129 GLY A 130 HIS A 163 SITE 4 AC1 19 HIS A 165 TYR A 263 SER A 264 SER A 269 SITE 5 AC1 19 SER A 270 HOH A 383 HOH A 432 SITE 1 AC2 7 TRP A 24 GLU A 25 LEU A 27 HIS A 299 SITE 2 AC2 7 GLY A 300 GLY A 301 SER A 303 SITE 1 AC3 4 LEU A 43 SER A 241 HIS A 294 HOH A 439 SITE 1 AC4 6 SER A 54 ASP A 55 ASP A 56 ASP A 304 SITE 2 AC4 6 HOH A 480 HOH A 481 CRYST1 45.280 52.790 140.340 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007126 0.00000