HEADER OXIDOREDUCTASE 13-MAY-09 3HG7 TITLE CRYSTAL STRUCTURE OF D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE TITLE 2 FAMILY PROTEIN FROM AEROMONAS SALMONICIDA SUBSP. SALMONICIDA A449 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS SALMONICIDA SUBSP. SALMONICIDA; SOURCE 3 ORGANISM_TAXID: 382245; SOURCE 4 STRAIN: A449; SOURCE 5 GENE: ASA_0563; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 2 STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, D-ISOMER SPECIFIC KEYWDS 3 2-HYDROXYACID DEHYDROGENASE, OXIDOREDUCTASE, PSI-2, NEW YORK SGX KEYWDS 4 RESEARCH CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,C.MORANO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 21-FEB-24 3HG7 1 REMARK REVDAT 7 13-OCT-21 3HG7 1 SEQADV REVDAT 6 10-FEB-21 3HG7 1 AUTHOR JRNL REMARK REVDAT 5 21-NOV-18 3HG7 1 AUTHOR REVDAT 4 01-NOV-17 3HG7 1 REMARK REVDAT 3 24-OCT-12 3HG7 1 AUTHOR REVDAT 2 13-JUL-11 3HG7 1 VERSN REVDAT 1 26-MAY-09 3HG7 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,C.MORANO,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF D-ISOMER SPECIFIC 2-HYDROXYACID JRNL TITL 2 DEHYDROGENASE FAMILY PROTEIN FROM AEROMONAS SALMONICIDA JRNL TITL 3 SUBSP. SALMONICIDA A449 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 41494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2581 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2453 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.73000 REMARK 3 B22 (A**2) : 2.73000 REMARK 3 B33 (A**2) : -5.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.643 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2542 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3443 ; 1.507 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;36.449 ;22.869 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;18.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.036 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1945 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 1.116 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2487 ; 3.473 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 992 ; 7.436 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 953 ; 1.179 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 313 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 RESIDUE RANGE : A 325 A 558 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4838 -29.5436 12.5613 REMARK 3 T TENSOR REMARK 3 T11: 0.1343 T22: 0.0392 REMARK 3 T33: 0.1916 T12: 0.0587 REMARK 3 T13: -0.1055 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 2.6224 L22: 0.4036 REMARK 3 L33: 0.1626 L12: -0.9284 REMARK 3 L13: 0.4023 L23: -0.1522 REMARK 3 S TENSOR REMARK 3 S11: -0.2516 S12: -0.1986 S13: 0.2747 REMARK 3 S21: 0.1677 S22: 0.1132 S23: -0.1524 REMARK 3 S31: -0.0996 S32: -0.0397 S33: 0.1384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3HG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78686 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.2340 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LI-SULFATE, 0.1 M TRIS, 25% PEG REMARK 280 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.16800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.52750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.52750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.25200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.52750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.52750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.08400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.52750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.52750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.25200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.52750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.52750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 16.08400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.16800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 314 REMARK 465 GLY A 315 REMARK 465 TYR A 316 REMARK 465 GLU A 317 REMARK 465 GLY A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 432 O HOH A 433 1.75 REMARK 500 O HOH A 432 O HOH A 434 2.00 REMARK 500 O HOH A 433 O HOH A 434 2.08 REMARK 500 O HOH A 413 O HOH A 483 2.11 REMARK 500 CG LYS A 139 O HOH A 359 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 391 O HOH A 391 7555 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 5 -74.87 69.57 REMARK 500 HIS A 26 74.72 45.02 REMARK 500 HIS A 26 76.84 42.11 REMARK 500 ASP A 89 42.69 -96.40 REMARK 500 ASN A 94 -166.51 -111.29 REMARK 500 GLN A 131 118.19 -160.16 REMARK 500 SER A 170 -66.57 -159.69 REMARK 500 ARG A 171 94.01 -4.75 REMARK 500 SER A 172 -67.14 55.28 REMARK 500 ALA A 214 -81.04 3.17 REMARK 500 SER A 215 -55.59 -134.92 REMARK 500 HIS A 219 67.44 -64.68 REMARK 500 CYS A 220 74.05 -162.67 REMARK 500 LYS A 221 120.06 102.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11164F RELATED DB: TARGETDB DBREF 3HG7 A 4 316 UNP A4SIK7 A4SIK7_AERS4 2 314 SEQADV 3HG7 MET A 1 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 SER A 2 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 LEU A 3 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 VAL A 169 UNP A4SIK7 ILE 167 ENGINEERED MUTATION SEQADV 3HG7 GLU A 317 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 GLY A 318 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 HIS A 319 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 HIS A 320 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 HIS A 321 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 HIS A 322 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 HIS A 323 UNP A4SIK7 EXPRESSION TAG SEQADV 3HG7 HIS A 324 UNP A4SIK7 EXPRESSION TAG SEQRES 1 A 324 MET SER LEU SER GLN ARG THR LEU LEU LEU LEU SER GLN SEQRES 2 A 324 ASP ASN ALA HIS TYR GLU ARG LEU LEU LYS ALA ALA HIS SEQRES 3 A 324 LEU PRO HIS LEU ARG ILE LEU ARG ALA ASP ASN GLN SER SEQRES 4 A 324 ASP ALA GLU LYS LEU ILE GLY GLU ALA HIS ILE LEU MET SEQRES 5 A 324 ALA GLU PRO ALA ARG ALA LYS PRO LEU LEU ALA LYS ALA SEQRES 6 A 324 ASN LYS LEU SER TRP PHE GLN SER THR TYR ALA GLY VAL SEQRES 7 A 324 ASP VAL LEU LEU ASP ALA ARG CYS ARG ARG ASP TYR GLN SEQRES 8 A 324 LEU THR ASN VAL ARG GLY ILE PHE GLY PRO LEU MET SER SEQRES 9 A 324 GLU TYR VAL PHE GLY HIS LEU LEU SER LEU MET ARG GLN SEQRES 10 A 324 LEU PRO LEU TYR ARG GLU GLN GLN LYS GLN ARG LEU TRP SEQRES 11 A 324 GLN SER HIS PRO TYR GLN GLY LEU LYS GLY ARG THR LEU SEQRES 12 A 324 LEU ILE LEU GLY THR GLY SER ILE GLY GLN HIS ILE ALA SEQRES 13 A 324 HIS THR GLY LYS HIS PHE GLY MET LYS VAL LEU GLY VAL SEQRES 14 A 324 SER ARG SER GLY ARG GLU ARG ALA GLY PHE ASP GLN VAL SEQRES 15 A 324 TYR GLN LEU PRO ALA LEU ASN LYS MET LEU ALA GLN ALA SEQRES 16 A 324 ASP VAL ILE VAL SER VAL LEU PRO ALA THR ARG GLU THR SEQRES 17 A 324 HIS HIS LEU PHE THR ALA SER ARG PHE GLU HIS CYS LYS SEQRES 18 A 324 PRO GLY ALA ILE LEU PHE ASN VAL GLY ARG GLY ASN ALA SEQRES 19 A 324 ILE ASN GLU GLY ASP LEU LEU THR ALA LEU ARG THR GLY SEQRES 20 A 324 LYS LEU GLY MET ALA VAL LEU ASP VAL PHE GLU GLN GLU SEQRES 21 A 324 PRO LEU PRO ALA ASP SER PRO LEU TRP GLY GLN PRO ASN SEQRES 22 A 324 LEU ILE ILE THR PRO HIS ASN SER ALA TYR SER PHE PRO SEQRES 23 A 324 ASP ASP VAL ALA GLN ILE PHE VAL ARG ASN TYR ILE ARG SEQRES 24 A 324 PHE ILE ASP GLY GLN PRO LEU ASP GLY LYS ILE ASP PHE SEQRES 25 A 324 ASP LYS GLY TYR GLU GLY HIS HIS HIS HIS HIS HIS HET GOL A 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *233(H2 O) HELIX 1 1 ASP A 14 ALA A 25 1 12 HELIX 2 2 ASN A 37 ILE A 45 1 9 HELIX 3 3 GLY A 46 ALA A 48 5 3 HELIX 4 4 GLU A 54 LYS A 59 1 6 HELIX 5 5 PRO A 60 ALA A 65 5 6 HELIX 6 6 VAL A 78 LEU A 82 5 5 HELIX 7 7 PHE A 99 ARG A 116 1 18 HELIX 8 8 GLN A 117 GLN A 127 1 11 HELIX 9 9 GLY A 149 PHE A 162 1 14 HELIX 10 10 GLN A 184 PRO A 186 5 3 HELIX 11 11 ALA A 187 GLN A 194 1 8 HELIX 12 12 ARG A 231 ILE A 235 5 5 HELIX 13 13 ASN A 236 THR A 246 1 11 HELIX 14 14 PHE A 285 ASP A 302 1 18 SHEET 1 A 5 LEU A 30 ARG A 34 0 SHEET 2 A 5 ARG A 6 LEU A 11 1 N ARG A 6 O ARG A 31 SHEET 3 A 5 ILE A 50 ALA A 53 1 O MET A 52 N LEU A 11 SHEET 4 A 5 TRP A 70 SER A 73 1 O GLN A 72 N LEU A 51 SHEET 5 A 5 GLN A 91 THR A 93 1 O THR A 93 N SER A 73 SHEET 1 B 7 GLN A 181 TYR A 183 0 SHEET 2 B 7 LYS A 165 VAL A 169 1 N GLY A 168 O TYR A 183 SHEET 3 B 7 THR A 142 LEU A 146 1 N LEU A 143 O LYS A 165 SHEET 4 B 7 VAL A 197 SER A 200 1 O VAL A 199 N LEU A 146 SHEET 5 B 7 ILE A 225 ASN A 228 1 O PHE A 227 N ILE A 198 SHEET 6 B 7 MET A 251 LEU A 254 1 O VAL A 253 N LEU A 226 SHEET 7 B 7 LEU A 274 ILE A 276 1 O ILE A 275 N ALA A 252 CISPEP 1 ARG A 171 SER A 172 0 -16.47 CISPEP 2 GLU A 260 PRO A 261 0 -1.09 SITE 1 AC1 6 ALA A 76 VAL A 229 HIS A 279 HOH A 418 SITE 2 AC1 6 HOH A 424 HOH A 475 CRYST1 117.055 117.055 64.336 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015543 0.00000