HEADER HYDROLASE/HYDROLASE INHIBITOR 20-MAY-09 3HIV
TITLE CRYSTAL STRUCTURE OF SAPORIN-L1 IN COMPLEX WITH THE TRINUCLEOTIDE
TITLE 2 INHIBITOR, A TRANSITION STATE ANALOGUE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: VACUOLAR SAPORIN;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 3.2.2.22;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SAPONARIA OFFICINALIS;
SOURCE 3 ORGANISM_COMMON: COMMON SOAPWORT;
SOURCE 4 ORGANISM_TAXID: 3572;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TRANSITION STATE, RIBOSOME INACTIVATING PROTEINS, RIPS, HYDROLASE,
KEYWDS 2 PLANT DEFENSE, PROTEIN SYNTHESIS INHIBITOR, TOXIN, HYDROLASE-
KEYWDS 3 HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.HO,M.B.STURM,S.C.ALMO,V.L.SCHRAMM
REVDAT 6 21-FEB-24 3HIV 1 REMARK
REVDAT 5 01-NOV-17 3HIV 1 REMARK
REVDAT 4 13-JUL-11 3HIV 1 VERSN
REVDAT 3 21-APR-10 3HIV 1 SEQRES DBREF REMARK SITE
REVDAT 2 15-DEC-09 3HIV 1 JRNL
REVDAT 1 08-DEC-09 3HIV 0
JRNL AUTH M.C.HO,M.B.STURM,S.C.ALMO,V.L.SCHRAMM
JRNL TITL TRANSITION STATE ANALOGUES IN STRUCTURES OF RICIN AND
JRNL TITL 2 SAPORIN RIBOSOME-INACTIVATING PROTEINS.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 20276 2009
JRNL REFN ISSN 0027-8424
JRNL PMID 19920175
JRNL DOI 10.1073/PNAS.0911606106
REMARK 2
REMARK 2 RESOLUTION. 2.14 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.5.0066
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.71
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4
REMARK 3 NUMBER OF REFLECTIONS : 24447
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.191
REMARK 3 R VALUE (WORKING SET) : 0.189
REMARK 3 FREE R VALUE : 0.229
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1297
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1208
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.97
REMARK 3 BIN R VALUE (WORKING SET) : 0.2500
REMARK 3 BIN FREE R VALUE SET COUNT : 56
REMARK 3 BIN FREE R VALUE : 0.3270
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4030
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 150
REMARK 3 SOLVENT ATOMS : 92
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.54
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.71000
REMARK 3 B22 (A**2) : -1.54000
REMARK 3 B33 (A**2) : 1.24000
REMARK 3 B12 (A**2) : 1.88000
REMARK 3 B13 (A**2) : -1.67000
REMARK 3 B23 (A**2) : -1.87000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.322
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.545
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4277 ; 0.012 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5839 ; 1.625 ; 2.005
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 6.054 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;42.472 ;25.079
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;15.589 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;23.992 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.104 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3174 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2557 ; 0.553 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4140 ; 1.017 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1720 ; 1.829 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1698 ; 3.026 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 35 A 257
REMARK 3 ORIGIN FOR THE GROUP (A): 31.5070 58.9720 49.5650
REMARK 3 T TENSOR
REMARK 3 T11: 0.1798 T22: 0.1629
REMARK 3 T33: 0.1138 T12: 0.0103
REMARK 3 T13: 0.0019 T23: 0.0104
REMARK 3 L TENSOR
REMARK 3 L11: 1.0771 L22: 0.9155
REMARK 3 L33: 0.9292 L12: 0.4345
REMARK 3 L13: 0.6005 L23: 0.0795
REMARK 3 S TENSOR
REMARK 3 S11: -0.0378 S12: -0.0151 S13: 0.0099
REMARK 3 S21: 0.0232 S22: -0.0458 S23: -0.1046
REMARK 3 S31: -0.0136 S32: -0.0219 S33: 0.0837
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 35 B 257
REMARK 3 ORIGIN FOR THE GROUP (A): 26.3210 30.9140 24.6100
REMARK 3 T TENSOR
REMARK 3 T11: 0.1270 T22: 0.1450
REMARK 3 T33: 0.1735 T12: -0.0122
REMARK 3 T13: 0.0306 T23: 0.0249
REMARK 3 L TENSOR
REMARK 3 L11: 0.3961 L22: 2.1831
REMARK 3 L33: 1.3020 L12: 0.2204
REMARK 3 L13: 0.4845 L23: 0.7360
REMARK 3 S TENSOR
REMARK 3 S11: 0.0069 S12: 0.0596 S13: 0.0148
REMARK 3 S21: 0.0318 S22: 0.0611 S23: -0.3089
REMARK 3 S31: 0.0402 S32: 0.0949 S33: -0.0681
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3HIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-09.
REMARK 100 THE DEPOSITION ID IS D_1000053186.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-DEC-08
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSLS
REMARK 200 BEAMLINE : X29A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.081
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25749
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140
REMARK 200 RESOLUTION RANGE LOW (A) : 51.710
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4
REMARK 200 DATA REDUNDANCY : 2.900
REMARK 200 R MERGE (I) : 0.06800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5730
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23
REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2
REMARK 200 DATA REDUNDANCY IN SHELL : 2.10
REMARK 200 R MERGE FOR SHELL (I) : 0.35700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.34
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000MME, 0.1M SODIUM ACETATE,
REMARK 280 0.4M POTASSIUM THIOCYANATE, PH 5.5, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASN A 258
REMARK 465 ASN A 259
REMARK 465 ASN B 258
REMARK 465 ASN B 259
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LEU A 211 CA - CB - CG ANGL. DEV. = 15.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 71 13.83 -150.37
REMARK 500 GLU A 194 -127.27 41.33
REMARK 500 GLU A 196 117.15 -164.60
REMARK 500 ASN B 71 13.39 -152.22
REMARK 500 VAL B 172 -64.22 -99.56
REMARK 500 GLU B 194 -138.86 56.66
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TXN A 258
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TXN B 258
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3HIO RELATED DB: PDB
REMARK 900 RELATED ID: 3HIQ RELATED DB: PDB
REMARK 900 RELATED ID: 3HIS RELATED DB: PDB
REMARK 900 SAME PROTEIN, APO FORM
REMARK 900 RELATED ID: 3HIT RELATED DB: PDB
REMARK 900 SAME PROTEIN IN COMPLEX WITH DINUCLEOTIDE INHIBITOR
REMARK 900 RELATED ID: 3HIW RELATED DB: PDB
DBREF 3HIV A 1 259 UNP Q2QEH4 Q2QEH4_SAPOF 22 280
DBREF 3HIV B 1 259 UNP Q2QEH4 Q2QEH4_SAPOF 22 280
SEQRES 1 A 259 VAL ILE ILE TYR GLU LEU ASN LEU GLN GLY THR THR LYS
SEQRES 2 A 259 ALA GLN TYR SER THR PHE LEU LYS GLN LEU ARG ASP ASP
SEQRES 3 A 259 ILE LYS ASP PRO ASN LEU HIS TYR GLY GLY THR ASN LEU
SEQRES 4 A 259 PRO VAL ILE LYS ARG PRO VAL GLY PRO PRO LYS PHE LEU
SEQRES 5 A 259 ARG VAL ASN LEU LYS ALA SER THR GLY THR VAL SER LEU
SEQRES 6 A 259 ALA VAL GLN ARG SER ASN LEU TYR VAL ALA ALA TYR LEU
SEQRES 7 A 259 ALA LYS ASN ASN ASN LYS GLN PHE ARG ALA TYR TYR PHE
SEQRES 8 A 259 LYS GLY PHE GLN ILE THR THR ASN GLN LEU ASN ASN LEU
SEQRES 9 A 259 PHE PRO GLU ALA THR GLY VAL SER ASN GLN GLN GLU LEU
SEQRES 10 A 259 GLY TYR GLY GLU SER TYR PRO GLN ILE GLN ASN ALA ALA
SEQRES 11 A 259 GLY VAL THR ARG GLN GLN ALA GLY LEU GLY ILE LYS LYS
SEQRES 12 A 259 LEU ALA GLU SER MET THR LYS VAL ASN GLY VAL ALA ARG
SEQRES 13 A 259 VAL GLU LYS ASP GLU ALA LEU PHE LEU LEU ILE VAL VAL
SEQRES 14 A 259 GLN MET VAL GLY GLU ALA ALA ARG PHE LYS TYR ILE GLU
SEQRES 15 A 259 ASN LEU VAL LEU ASN ASN PHE ASP THR ALA LYS GLU VAL
SEQRES 16 A 259 GLU PRO VAL PRO ASP ARG VAL ILE ILE LEU GLU ASN ASN
SEQRES 17 A 259 TRP GLY LEU LEU SER ARG ALA ALA LYS THR ALA ASN ASN
SEQRES 18 A 259 GLY VAL PHE GLN THR PRO LEU VAL LEU THR SER TYR ALA
SEQRES 19 A 259 VAL PRO GLY VAL GLU TRP ARG VAL THR THR VAL ALA GLU
SEQRES 20 A 259 VAL GLU ILE GLY ILE PHE LEU ASN VAL ASP ASN ASN
SEQRES 1 B 259 VAL ILE ILE TYR GLU LEU ASN LEU GLN GLY THR THR LYS
SEQRES 2 B 259 ALA GLN TYR SER THR PHE LEU LYS GLN LEU ARG ASP ASP
SEQRES 3 B 259 ILE LYS ASP PRO ASN LEU HIS TYR GLY GLY THR ASN LEU
SEQRES 4 B 259 PRO VAL ILE LYS ARG PRO VAL GLY PRO PRO LYS PHE LEU
SEQRES 5 B 259 ARG VAL ASN LEU LYS ALA SER THR GLY THR VAL SER LEU
SEQRES 6 B 259 ALA VAL GLN ARG SER ASN LEU TYR VAL ALA ALA TYR LEU
SEQRES 7 B 259 ALA LYS ASN ASN ASN LYS GLN PHE ARG ALA TYR TYR PHE
SEQRES 8 B 259 LYS GLY PHE GLN ILE THR THR ASN GLN LEU ASN ASN LEU
SEQRES 9 B 259 PHE PRO GLU ALA THR GLY VAL SER ASN GLN GLN GLU LEU
SEQRES 10 B 259 GLY TYR GLY GLU SER TYR PRO GLN ILE GLN ASN ALA ALA
SEQRES 11 B 259 GLY VAL THR ARG GLN GLN ALA GLY LEU GLY ILE LYS LYS
SEQRES 12 B 259 LEU ALA GLU SER MET THR LYS VAL ASN GLY VAL ALA ARG
SEQRES 13 B 259 VAL GLU LYS ASP GLU ALA LEU PHE LEU LEU ILE VAL VAL
SEQRES 14 B 259 GLN MET VAL GLY GLU ALA ALA ARG PHE LYS TYR ILE GLU
SEQRES 15 B 259 ASN LEU VAL LEU ASN ASN PHE ASP THR ALA LYS GLU VAL
SEQRES 16 B 259 GLU PRO VAL PRO ASP ARG VAL ILE ILE LEU GLU ASN ASN
SEQRES 17 B 259 TRP GLY LEU LEU SER ARG ALA ALA LYS THR ALA ASN ASN
SEQRES 18 B 259 GLY VAL PHE GLN THR PRO LEU VAL LEU THR SER TYR ALA
SEQRES 19 B 259 VAL PRO GLY VAL GLU TRP ARG VAL THR THR VAL ALA GLU
SEQRES 20 B 259 VAL GLU ILE GLY ILE PHE LEU ASN VAL ASP ASN ASN
HET TXN A 260 75
HET TXN B 260 75
HETNAM TXN (2R,3R,4R,5R)-5-(2-AMINO-6-OXO-3,6-DIHYDRO-9H-PURIN-9-
HETNAM 2 TXN YL)-2-({[(S)-({(3R,4R)-4-({[(S)-{[(2R,3R,4R,5R)-5-(2-
HETNAM 3 TXN AMINO-6-OXO-6,8-DIHYDRO-9H-PURIN-9-YL)-2-
HETNAM 4 TXN (HYDROXYMETHYL)-4-METHOXYTETRAHYDROFURAN-3-
HETNAM 5 TXN YL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-1-[(4-AMINO-5H-
HETNAM 6 TXN PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]PYRROLIDIN-3-
HETNAM 7 TXN YL}OXY)(HYDROXY)PHOSPHORYL]OXY}METHYL)-4-
HETNAM 8 TXN METHOXYTETRAHYDROFURAN-3-YL 3-HYDROXYPROPYL HYDROGEN
HETNAM 9 TXN (S)-PHOSPHATE
FORMUL 3 TXN 2(C37 H52 N15 O20 P3)
FORMUL 5 HOH *92(H2 O)
HELIX 1 1 THR A 12 LYS A 28 1 17
HELIX 2 2 THR A 97 PHE A 105 1 9
HELIX 3 3 PRO A 106 THR A 109 5 4
HELIX 4 4 GLY A 110 SER A 112 5 3
HELIX 5 5 SER A 122 GLY A 131 1 10
HELIX 6 6 THR A 133 GLY A 138 1 6
HELIX 7 7 GLY A 140 THR A 149 1 10
HELIX 8 8 VAL A 157 PHE A 178 1 22
HELIX 9 9 PHE A 178 ASN A 188 1 11
HELIX 10 10 PRO A 199 ASN A 207 1 9
HELIX 11 11 ASN A 208 THR A 218 1 11
HELIX 12 12 ALA A 246 GLU A 249 5 4
HELIX 13 13 THR B 12 LYS B 28 1 17
HELIX 14 14 THR B 97 PHE B 105 1 9
HELIX 15 15 PRO B 106 THR B 109 5 4
HELIX 16 16 GLY B 110 SER B 112 5 3
HELIX 17 17 SER B 122 GLY B 131 1 10
HELIX 18 18 THR B 133 GLY B 138 1 6
HELIX 19 19 GLY B 140 THR B 149 1 10
HELIX 20 20 VAL B 157 VAL B 172 1 16
HELIX 21 21 VAL B 172 PHE B 178 1 7
HELIX 22 22 PHE B 178 ASN B 188 1 11
HELIX 23 23 PRO B 199 ASN B 207 1 9
HELIX 24 24 ASN B 208 THR B 218 1 11
HELIX 25 25 ALA B 246 GLU B 249 5 4
SHEET 1 A 6 ILE A 3 ASN A 7 0
SHEET 2 A 6 PHE A 51 LYS A 57 1 O ARG A 53 N TYR A 4
SHEET 3 A 6 THR A 62 GLN A 68 -1 O VAL A 63 N LEU A 56
SHEET 4 A 6 VAL A 74 LYS A 80 -1 O ALA A 75 N ALA A 66
SHEET 5 A 6 PHE A 86 TYR A 90 -1 O TYR A 89 N TYR A 77
SHEET 6 A 6 GLN A 114 GLU A 116 1 O GLN A 115 N ALA A 88
SHEET 1 B 2 VAL A 223 LEU A 230 0
SHEET 2 B 2 TRP A 240 THR A 244 -1 O TRP A 240 N LEU A 230
SHEET 1 C 6 ILE B 3 ASN B 7 0
SHEET 2 C 6 PHE B 51 ALA B 58 1 O ASN B 55 N TYR B 4
SHEET 3 C 6 GLY B 61 GLN B 68 -1 O VAL B 63 N LEU B 56
SHEET 4 C 6 VAL B 74 LYS B 80 -1 O ALA B 75 N ALA B 66
SHEET 5 C 6 PHE B 86 TYR B 90 -1 O TYR B 89 N TYR B 77
SHEET 6 C 6 GLN B 114 GLU B 116 1 O GLN B 115 N ALA B 88
SHEET 1 D 2 VAL B 223 LEU B 230 0
SHEET 2 D 2 TRP B 240 THR B 244 -1 O VAL B 242 N LEU B 228
CISPEP 1 ARG A 44 PRO A 45 0 1.41
CISPEP 2 GLY A 47 PRO A 48 0 -2.94
CISPEP 3 PRO A 48 PRO A 49 0 -2.06
CISPEP 4 GLU A 196 PRO A 197 0 -0.04
CISPEP 5 ARG B 44 PRO B 45 0 -4.22
CISPEP 6 GLY B 47 PRO B 48 0 1.83
CISPEP 7 PRO B 48 PRO B 49 0 -2.58
CISPEP 8 GLU B 196 PRO B 197 0 -9.12
SITE 1 AC1 24 ASN A 71 LEU A 72 TYR A 73 VAL A 74
SITE 2 AC1 24 PHE A 94 GLU A 121 TYR A 123 PRO A 124
SITE 3 AC1 24 GLU A 174 ARG A 177 GLU A 206 ASN A 207
SITE 4 AC1 24 TRP A 209 GLY A 210 ARG A 214 TYR A 233
SITE 5 AC1 24 LEU A 254 HOH A 261 HOH A 270 HOH A 302
SITE 6 AC1 24 THR B 231 SER B 232 TYR B 233 HOH B 272
SITE 1 AC2 23 THR A 231 SER A 232 TYR A 233 ASN B 71
SITE 2 AC2 23 LEU B 72 TYR B 73 VAL B 74 PHE B 94
SITE 3 AC2 23 GLU B 121 SER B 122 TYR B 123 PRO B 124
SITE 4 AC2 23 GLU B 174 ARG B 177 GLU B 206 ASN B 207
SITE 5 AC2 23 TRP B 209 GLY B 210 ARG B 214 TYR B 233
SITE 6 AC2 23 LEU B 254 HOH B 262 HOH B 263
CRYST1 50.329 52.884 54.239 79.41 66.46 80.67 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019869 -0.003264 -0.008299 0.00000
SCALE2 0.000000 0.019163 -0.002543 0.00000
SCALE3 0.000000 0.000000 0.020287 0.00000