data_3HJ2 # _entry.id 3HJ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HJ2 pdb_00003hj2 10.2210/pdb3hj2/pdb RCSB RCSB053193 ? ? WWPDB D_1000053193 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2pm1 'Derivative of human alpha-defensin 1 (HNP1)' unspecified PDB 2pm4 'Human alpha-defensin 1 (multiple Arg->Lys mutant)' unspecified PDB 2pm5 'Human alpha-defensin 1 derivative (HNP1)' unspecified PDB 1zmn ;Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenyl)guanidine ; unspecified PDB 1zmq 'Crystal structure of human alpha-defensin-6' unspecified PDB 1zmp 'Crystal structure of human defensin-5' unspecified PDB 3HJD 'X-ray structure of monomeric variant of HNP1' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HJ2 _pdbx_database_status.recvd_initial_deposition_date 2009-05-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lubkowski, J.' 1 'Pazgier, M.' 2 'Lu, W.' 3 # _citation.id primary _citation.title 'What Dictates the Multifaced Functions of the Human alpha-Defensin HNP1?' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wei, G.' 1 ? primary 'de Leeuw, E.' 2 ? primary 'Pazgier, M.' 3 ? primary 'Rajabi, M.' 4 ? primary 'Li, J.' 5 ? primary 'Zou, G.' 6 ? primary 'Ericksen, B.' 7 ? primary 'Wu, Z.' 8 ? primary 'Yuan, W.' 9 ? primary 'Szmacinski, H.' 10 ? primary 'Lu, W.-Y.' 11 ? primary 'Lubkowski, J.' 12 ? primary 'Lehrer, R.L.' 13 ? primary 'Lu, W.' 14 ? # _cell.entry_id 3HJ2 _cell.length_a 47.07 _cell.length_b 49.37 _cell.length_c 24.99 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HJ2 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HUMAN NEUTROPHIL PEPTIDE 1' 3669.358 2 ? ? 'Residues 65-94' ? 2 water nat water 18.015 51 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neutrophil defensin 1, HNP-1, HP-1, HP1, Defensin, alpha 1, HP 1-56, Neutrophil defensin 2, HNP-2, HP-2, HP2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGGACYCRIPACIAGERRYGTCIYQGRLWAFCC _entity_poly.pdbx_seq_one_letter_code_can CGGACYCRIPACIAGERRYGTCIYQGRLWAFCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 GLY n 1 3 GLY n 1 4 ALA n 1 5 CYS n 1 6 TYR n 1 7 CYS n 1 8 ARG n 1 9 ILE n 1 10 PRO n 1 11 ALA n 1 12 CYS n 1 13 ILE n 1 14 ALA n 1 15 GLY n 1 16 GLU n 1 17 ARG n 1 18 ARG n 1 19 TYR n 1 20 GLY n 1 21 THR n 1 22 CYS n 1 23 ILE n 1 24 TYR n 1 25 GLN n 1 26 GLY n 1 27 ARG n 1 28 LEU n 1 29 TRP n 1 30 ALA n 1 31 PHE n 1 32 CYS n 1 33 CYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DEF1_HUMAN _struct_ref.pdbx_db_accession P59665 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ACYCRIPACIAGERRYGTCIYQGRLWAFCC _struct_ref.pdbx_align_begin 65 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3HJ2 A 4 ? 33 ? P59665 65 ? 94 ? 4 33 2 1 3HJ2 B 4 ? 33 ? P59665 65 ? 94 ? 4 33 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3HJ2 CYS A 1 ? UNP P59665 ? ? 'SEE REMARK 999' 1 1 1 3HJ2 GLY A 2 ? UNP P59665 ? ? 'SEE REMARK 999' 2 2 1 3HJ2 GLY A 3 ? UNP P59665 ? ? 'SEE REMARK 999' 3 3 2 3HJ2 CYS B 1 ? UNP P59665 ? ? 'SEE REMARK 999' 1 4 2 3HJ2 GLY B 2 ? UNP P59665 ? ? 'SEE REMARK 999' 2 5 2 3HJ2 GLY B 3 ? UNP P59665 ? ? 'SEE REMARK 999' 3 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 3HJ2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '0.1 M Na-citrate (pH 5.6), 0.2 M NH4-acetate, 30% (v/v) MPD, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-08-10 _diffrn_detector.details 'Rosenbaum-Rock monochromator high-resolution double-crystal Si(220)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3HJ2 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -1.7 _reflns.d_resolution_low 24.68 _reflns.d_resolution_high 1.40 _reflns.number_obs 11611 _reflns.number_all 11611 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rsym_value 0.065 _reflns.pdbx_netI_over_sigmaI 22.5 _reflns.B_iso_Wilson_estimate 22.2 _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.114 _reflns_shell.pdbx_Rsym_value 0.114 _reflns_shell.meanI_over_sigI_obs 17.8 _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1171 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3HJ2 _refine.ls_number_reflns_obs 10987 _refine.ls_number_reflns_all 10987 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 96.44 _refine.ls_R_factor_obs 0.20059 _refine.ls_R_factor_all 0.20059 _refine.ls_R_factor_R_work 0.19886 _refine.ls_R_factor_R_free 0.23578 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 579 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 25.827 _refine.aniso_B[1][1] -0.32 _refine.aniso_B[2][2] -0.39 _refine.aniso_B[3][3] 0.72 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1dfn _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.085 _refine.pdbx_overall_ESU_R_Free 0.075 _refine.overall_SU_ML 0.047 _refine.overall_SU_B 2.655 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3HJ2 _refine_analyze.Luzzati_coordinate_error_obs 0.2480 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 15.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 487 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 538 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 505 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.857 1.935 ? 685 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.617 5.000 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 17.594 17.895 ? 19 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.398 15.000 ? 68 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.451 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.136 0.200 ? 66 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.021 ? 393 'X-RAY DIFFRACTION' ? r_mcbond_it 2.108 1.500 ? 322 'X-RAY DIFFRACTION' ? r_mcangle_it 2.893 2.000 ? 499 'X-RAY DIFFRACTION' ? r_scbond_it 3.512 3.000 ? 183 'X-RAY DIFFRACTION' ? r_scangle_it 4.558 4.500 ? 186 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.994 3.000 ? 505 'X-RAY DIFFRACTION' ? r_sphericity_free 10.232 3.000 ? 51 'X-RAY DIFFRACTION' ? r_sphericity_bonded 5.154 3.000 ? 487 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.400 _refine_ls_shell.d_res_low 1.436 _refine_ls_shell.number_reflns_R_work 819 _refine_ls_shell.R_factor_R_work 0.192 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.225 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 850 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HJ2 _struct.title 'Crystal structure of covalent dimer of HNP1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HJ2 _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text ;defensin, antimicrobial, chemotactic, cationic, Cys-rich, covalent dimer, synthetic, Antibiotic, Antiviral defense, Disulfide bond, Fungicide, Phosphoprotein, Secreted, ANTIMICROBIAL PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 B CYS 1 SG ? ? A CYS 1 B CYS 1 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 33 SG ? ? A CYS 5 A CYS 33 1_555 ? ? ? ? ? ? ? 2.083 ? ? disulf3 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 7 A CYS 22 1_555 ? ? ? ? ? ? ? 2.064 ? ? disulf4 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 32 SG ? ? A CYS 12 A CYS 32 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf5 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 33 SG ? ? B CYS 5 B CYS 33 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf6 disulf ? ? B CYS 7 SG ? ? ? 1_555 B CYS 22 SG ? ? B CYS 7 B CYS 22 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf7 disulf ? ? B CYS 12 SG ? ? ? 1_555 B CYS 32 SG ? ? B CYS 12 B CYS 32 1_555 ? ? ? ? ? ? ? 2.038 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 9 A . ? ILE 9 A PRO 10 A ? PRO 10 A 1 9.86 2 ILE 9 B . ? ILE 9 B PRO 10 B ? PRO 10 B 1 9.11 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 6 ? ARG A 8 ? TYR A 6 ARG A 8 A 2 ARG A 27 ? CYS A 32 ? ARG A 27 CYS A 32 A 3 ARG A 18 ? TYR A 24 ? ARG A 18 TYR A 24 A 4 ARG B 17 ? TYR B 24 ? ARG B 17 TYR B 24 A 5 ARG B 27 ? CYS B 33 ? ARG B 27 CYS B 33 A 6 TYR B 6 ? ARG B 8 ? TYR B 6 ARG B 8 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 6 ? N TYR A 6 O CYS A 32 ? O CYS A 32 A 2 3 O TRP A 29 ? O TRP A 29 N CYS A 22 ? N CYS A 22 A 3 4 N THR A 21 ? N THR A 21 O ILE B 23 ? O ILE B 23 A 4 5 N TYR B 19 ? N TYR B 19 O PHE B 31 ? O PHE B 31 A 5 6 O CYS B 32 ? O CYS B 32 N TYR B 6 ? N TYR B 6 # _database_PDB_matrix.entry_id 3HJ2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HJ2 _atom_sites.fract_transf_matrix[1][1] 0.021247 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020256 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040024 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 TYR 6 6 6 TYR ALA A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 ARG 8 8 8 ARG ALA A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLU 16 16 16 GLU ALA A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 CYS 33 33 33 CYS CYS A . n B 1 1 CYS 1 1 1 CYS CYS B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 CYS 5 5 5 CYS CYS B . n B 1 6 TYR 6 6 6 TYR TYR B . n B 1 7 CYS 7 7 7 CYS CYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 CYS 12 12 12 CYS CYS B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 TYR 19 19 19 TYR TYR B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 THR 21 21 21 THR THR B . n B 1 22 CYS 22 22 22 CYS CYS B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 TYR 24 24 24 TYR TYR B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 TRP 29 29 29 TRP TRP B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 PHE 31 31 31 PHE PHE B . n B 1 32 CYS 32 32 32 CYS CYS B . n B 1 33 CYS 33 33 33 CYS CYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 34 6 HOH HOH A . C 2 HOH 2 35 7 HOH HOH A . C 2 HOH 3 36 36 HOH HOH A . C 2 HOH 4 37 8 HOH HOH A . C 2 HOH 5 38 9 HOH HOH A . C 2 HOH 6 39 39 HOH HOH A . C 2 HOH 7 40 10 HOH HOH A . C 2 HOH 8 41 41 HOH HOH A . C 2 HOH 9 42 14 HOH HOH A . C 2 HOH 10 43 43 HOH HOH A . C 2 HOH 11 44 16 HOH HOH A . C 2 HOH 12 45 45 HOH HOH A . C 2 HOH 13 46 17 HOH HOH A . C 2 HOH 14 47 21 HOH HOH A . C 2 HOH 15 48 48 HOH HOH A . C 2 HOH 16 49 22 HOH HOH A . C 2 HOH 17 50 24 HOH HOH A . C 2 HOH 18 51 25 HOH HOH A . C 2 HOH 19 52 27 HOH HOH A . C 2 HOH 20 53 28 HOH HOH A . C 2 HOH 21 54 29 HOH HOH A . C 2 HOH 22 55 31 HOH HOH A . D 2 HOH 1 34 34 HOH HOH B . D 2 HOH 2 35 35 HOH HOH B . D 2 HOH 3 36 1 HOH HOH B . D 2 HOH 4 37 37 HOH HOH B . D 2 HOH 5 38 38 HOH HOH B . D 2 HOH 6 39 2 HOH HOH B . D 2 HOH 7 40 40 HOH HOH B . D 2 HOH 8 41 3 HOH HOH B . D 2 HOH 9 42 42 HOH HOH B . D 2 HOH 10 43 4 HOH HOH B . D 2 HOH 11 44 44 HOH HOH B . D 2 HOH 12 45 5 HOH HOH B . D 2 HOH 13 46 46 HOH HOH B . D 2 HOH 14 47 47 HOH HOH B . D 2 HOH 15 48 11 HOH HOH B . D 2 HOH 16 49 49 HOH HOH B . D 2 HOH 17 50 50 HOH HOH B . D 2 HOH 18 51 51 HOH HOH B . D 2 HOH 19 52 12 HOH HOH B . D 2 HOH 20 53 13 HOH HOH B . D 2 HOH 21 54 15 HOH HOH B . D 2 HOH 22 55 18 HOH HOH B . D 2 HOH 23 56 19 HOH HOH B . D 2 HOH 24 57 20 HOH HOH B . D 2 HOH 25 58 23 HOH HOH B . D 2 HOH 26 59 26 HOH HOH B . D 2 HOH 27 60 30 HOH HOH B . D 2 HOH 28 61 32 HOH HOH B . D 2 HOH 29 62 33 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1040 ? 1 MORE -12 ? 1 'SSA (A^2)' 4590 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation_author 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -18.7700 10.4960 4.0630 -0.1093 -0.1166 -0.1436 0.0102 0.0135 0.0107 1.4972 10.0792 2.4336 -0.5639 0.9644 -0.8516 0.0043 -0.0483 0.0071 0.4582 -0.0008 -0.2318 -0.0503 0.1399 -0.0036 'X-RAY DIFFRACTION' 2 ? refined -12.5550 4.9050 -4.7320 -0.1130 -0.1045 -0.1035 0.0166 -0.0498 -0.0284 11.5009 3.9254 3.4533 -3.1794 1.3678 -3.1816 -0.2762 0.1744 0.6165 0.1854 0.0123 -0.3570 -0.1972 0.0161 0.2638 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 3 ? ? A 8 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 9 ? ? A 15 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 16 ? ? A 16 ? ? ? ? 'X-RAY DIFFRACTION' 4 1 A 17 ? ? A 33 ? ? ? ? 'X-RAY DIFFRACTION' 5 2 B 3 ? ? B 8 ? ? ? ? 'X-RAY DIFFRACTION' 6 2 B 9 ? ? B 15 ? ? ? ? 'X-RAY DIFFRACTION' 7 2 B 16 ? ? B 16 ? ? ? ? 'X-RAY DIFFRACTION' 8 2 B 17 ? ? B 33 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.4.0057 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3HJ2 _pdbx_entry_details.sequence_details 'AN ARTIFICIAL N-TERMINAL CGG EXTENSION DESIGNED TO COVALENTLY LINK (CYS-CYS) MONOMERS OF HNP1' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 41 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 41 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 1.19 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 6 ? CG ? A TYR 6 CG 2 1 Y 1 A TYR 6 ? CD1 ? A TYR 6 CD1 3 1 Y 1 A TYR 6 ? CD2 ? A TYR 6 CD2 4 1 Y 1 A TYR 6 ? CE1 ? A TYR 6 CE1 5 1 Y 1 A TYR 6 ? CE2 ? A TYR 6 CE2 6 1 Y 1 A TYR 6 ? CZ ? A TYR 6 CZ 7 1 Y 1 A TYR 6 ? OH ? A TYR 6 OH 8 1 Y 1 A ARG 8 ? CG ? A ARG 8 CG 9 1 Y 1 A ARG 8 ? CD ? A ARG 8 CD 10 1 Y 1 A ARG 8 ? NE ? A ARG 8 NE 11 1 Y 1 A ARG 8 ? CZ ? A ARG 8 CZ 12 1 Y 1 A ARG 8 ? NH1 ? A ARG 8 NH1 13 1 Y 1 A ARG 8 ? NH2 ? A ARG 8 NH2 14 1 Y 1 A GLU 16 ? CG ? A GLU 16 CG 15 1 Y 1 A GLU 16 ? CD ? A GLU 16 CD 16 1 Y 1 A GLU 16 ? OE1 ? A GLU 16 OE1 17 1 Y 1 A GLU 16 ? OE2 ? A GLU 16 OE2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 CYS N N N N 41 CYS CA C N R 42 CYS C C N N 43 CYS O O N N 44 CYS CB C N N 45 CYS SG S N N 46 CYS OXT O N N 47 CYS H H N N 48 CYS H2 H N N 49 CYS HA H N N 50 CYS HB2 H N N 51 CYS HB3 H N N 52 CYS HG H N N 53 CYS HXT H N N 54 GLN N N N N 55 GLN CA C N S 56 GLN C C N N 57 GLN O O N N 58 GLN CB C N N 59 GLN CG C N N 60 GLN CD C N N 61 GLN OE1 O N N 62 GLN NE2 N N N 63 GLN OXT O N N 64 GLN H H N N 65 GLN H2 H N N 66 GLN HA H N N 67 GLN HB2 H N N 68 GLN HB3 H N N 69 GLN HG2 H N N 70 GLN HG3 H N N 71 GLN HE21 H N N 72 GLN HE22 H N N 73 GLN HXT H N N 74 GLU N N N N 75 GLU CA C N S 76 GLU C C N N 77 GLU O O N N 78 GLU CB C N N 79 GLU CG C N N 80 GLU CD C N N 81 GLU OE1 O N N 82 GLU OE2 O N N 83 GLU OXT O N N 84 GLU H H N N 85 GLU H2 H N N 86 GLU HA H N N 87 GLU HB2 H N N 88 GLU HB3 H N N 89 GLU HG2 H N N 90 GLU HG3 H N N 91 GLU HE2 H N N 92 GLU HXT H N N 93 GLY N N N N 94 GLY CA C N N 95 GLY C C N N 96 GLY O O N N 97 GLY OXT O N N 98 GLY H H N N 99 GLY H2 H N N 100 GLY HA2 H N N 101 GLY HA3 H N N 102 GLY HXT H N N 103 HOH O O N N 104 HOH H1 H N N 105 HOH H2 H N N 106 ILE N N N N 107 ILE CA C N S 108 ILE C C N N 109 ILE O O N N 110 ILE CB C N S 111 ILE CG1 C N N 112 ILE CG2 C N N 113 ILE CD1 C N N 114 ILE OXT O N N 115 ILE H H N N 116 ILE H2 H N N 117 ILE HA H N N 118 ILE HB H N N 119 ILE HG12 H N N 120 ILE HG13 H N N 121 ILE HG21 H N N 122 ILE HG22 H N N 123 ILE HG23 H N N 124 ILE HD11 H N N 125 ILE HD12 H N N 126 ILE HD13 H N N 127 ILE HXT H N N 128 LEU N N N N 129 LEU CA C N S 130 LEU C C N N 131 LEU O O N N 132 LEU CB C N N 133 LEU CG C N N 134 LEU CD1 C N N 135 LEU CD2 C N N 136 LEU OXT O N N 137 LEU H H N N 138 LEU H2 H N N 139 LEU HA H N N 140 LEU HB2 H N N 141 LEU HB3 H N N 142 LEU HG H N N 143 LEU HD11 H N N 144 LEU HD12 H N N 145 LEU HD13 H N N 146 LEU HD21 H N N 147 LEU HD22 H N N 148 LEU HD23 H N N 149 LEU HXT H N N 150 PHE N N N N 151 PHE CA C N S 152 PHE C C N N 153 PHE O O N N 154 PHE CB C N N 155 PHE CG C Y N 156 PHE CD1 C Y N 157 PHE CD2 C Y N 158 PHE CE1 C Y N 159 PHE CE2 C Y N 160 PHE CZ C Y N 161 PHE OXT O N N 162 PHE H H N N 163 PHE H2 H N N 164 PHE HA H N N 165 PHE HB2 H N N 166 PHE HB3 H N N 167 PHE HD1 H N N 168 PHE HD2 H N N 169 PHE HE1 H N N 170 PHE HE2 H N N 171 PHE HZ H N N 172 PHE HXT H N N 173 PRO N N N N 174 PRO CA C N S 175 PRO C C N N 176 PRO O O N N 177 PRO CB C N N 178 PRO CG C N N 179 PRO CD C N N 180 PRO OXT O N N 181 PRO H H N N 182 PRO HA H N N 183 PRO HB2 H N N 184 PRO HB3 H N N 185 PRO HG2 H N N 186 PRO HG3 H N N 187 PRO HD2 H N N 188 PRO HD3 H N N 189 PRO HXT H N N 190 THR N N N N 191 THR CA C N S 192 THR C C N N 193 THR O O N N 194 THR CB C N R 195 THR OG1 O N N 196 THR CG2 C N N 197 THR OXT O N N 198 THR H H N N 199 THR H2 H N N 200 THR HA H N N 201 THR HB H N N 202 THR HG1 H N N 203 THR HG21 H N N 204 THR HG22 H N N 205 THR HG23 H N N 206 THR HXT H N N 207 TRP N N N N 208 TRP CA C N S 209 TRP C C N N 210 TRP O O N N 211 TRP CB C N N 212 TRP CG C Y N 213 TRP CD1 C Y N 214 TRP CD2 C Y N 215 TRP NE1 N Y N 216 TRP CE2 C Y N 217 TRP CE3 C Y N 218 TRP CZ2 C Y N 219 TRP CZ3 C Y N 220 TRP CH2 C Y N 221 TRP OXT O N N 222 TRP H H N N 223 TRP H2 H N N 224 TRP HA H N N 225 TRP HB2 H N N 226 TRP HB3 H N N 227 TRP HD1 H N N 228 TRP HE1 H N N 229 TRP HE3 H N N 230 TRP HZ2 H N N 231 TRP HZ3 H N N 232 TRP HH2 H N N 233 TRP HXT H N N 234 TYR N N N N 235 TYR CA C N S 236 TYR C C N N 237 TYR O O N N 238 TYR CB C N N 239 TYR CG C Y N 240 TYR CD1 C Y N 241 TYR CD2 C Y N 242 TYR CE1 C Y N 243 TYR CE2 C Y N 244 TYR CZ C Y N 245 TYR OH O N N 246 TYR OXT O N N 247 TYR H H N N 248 TYR H2 H N N 249 TYR HA H N N 250 TYR HB2 H N N 251 TYR HB3 H N N 252 TYR HD1 H N N 253 TYR HD2 H N N 254 TYR HE1 H N N 255 TYR HE2 H N N 256 TYR HH H N N 257 TYR HXT H N N 258 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 CYS N CA sing N N 39 CYS N H sing N N 40 CYS N H2 sing N N 41 CYS CA C sing N N 42 CYS CA CB sing N N 43 CYS CA HA sing N N 44 CYS C O doub N N 45 CYS C OXT sing N N 46 CYS CB SG sing N N 47 CYS CB HB2 sing N N 48 CYS CB HB3 sing N N 49 CYS SG HG sing N N 50 CYS OXT HXT sing N N 51 GLN N CA sing N N 52 GLN N H sing N N 53 GLN N H2 sing N N 54 GLN CA C sing N N 55 GLN CA CB sing N N 56 GLN CA HA sing N N 57 GLN C O doub N N 58 GLN C OXT sing N N 59 GLN CB CG sing N N 60 GLN CB HB2 sing N N 61 GLN CB HB3 sing N N 62 GLN CG CD sing N N 63 GLN CG HG2 sing N N 64 GLN CG HG3 sing N N 65 GLN CD OE1 doub N N 66 GLN CD NE2 sing N N 67 GLN NE2 HE21 sing N N 68 GLN NE2 HE22 sing N N 69 GLN OXT HXT sing N N 70 GLU N CA sing N N 71 GLU N H sing N N 72 GLU N H2 sing N N 73 GLU CA C sing N N 74 GLU CA CB sing N N 75 GLU CA HA sing N N 76 GLU C O doub N N 77 GLU C OXT sing N N 78 GLU CB CG sing N N 79 GLU CB HB2 sing N N 80 GLU CB HB3 sing N N 81 GLU CG CD sing N N 82 GLU CG HG2 sing N N 83 GLU CG HG3 sing N N 84 GLU CD OE1 doub N N 85 GLU CD OE2 sing N N 86 GLU OE2 HE2 sing N N 87 GLU OXT HXT sing N N 88 GLY N CA sing N N 89 GLY N H sing N N 90 GLY N H2 sing N N 91 GLY CA C sing N N 92 GLY CA HA2 sing N N 93 GLY CA HA3 sing N N 94 GLY C O doub N N 95 GLY C OXT sing N N 96 GLY OXT HXT sing N N 97 HOH O H1 sing N N 98 HOH O H2 sing N N 99 ILE N CA sing N N 100 ILE N H sing N N 101 ILE N H2 sing N N 102 ILE CA C sing N N 103 ILE CA CB sing N N 104 ILE CA HA sing N N 105 ILE C O doub N N 106 ILE C OXT sing N N 107 ILE CB CG1 sing N N 108 ILE CB CG2 sing N N 109 ILE CB HB sing N N 110 ILE CG1 CD1 sing N N 111 ILE CG1 HG12 sing N N 112 ILE CG1 HG13 sing N N 113 ILE CG2 HG21 sing N N 114 ILE CG2 HG22 sing N N 115 ILE CG2 HG23 sing N N 116 ILE CD1 HD11 sing N N 117 ILE CD1 HD12 sing N N 118 ILE CD1 HD13 sing N N 119 ILE OXT HXT sing N N 120 LEU N CA sing N N 121 LEU N H sing N N 122 LEU N H2 sing N N 123 LEU CA C sing N N 124 LEU CA CB sing N N 125 LEU CA HA sing N N 126 LEU C O doub N N 127 LEU C OXT sing N N 128 LEU CB CG sing N N 129 LEU CB HB2 sing N N 130 LEU CB HB3 sing N N 131 LEU CG CD1 sing N N 132 LEU CG CD2 sing N N 133 LEU CG HG sing N N 134 LEU CD1 HD11 sing N N 135 LEU CD1 HD12 sing N N 136 LEU CD1 HD13 sing N N 137 LEU CD2 HD21 sing N N 138 LEU CD2 HD22 sing N N 139 LEU CD2 HD23 sing N N 140 LEU OXT HXT sing N N 141 PHE N CA sing N N 142 PHE N H sing N N 143 PHE N H2 sing N N 144 PHE CA C sing N N 145 PHE CA CB sing N N 146 PHE CA HA sing N N 147 PHE C O doub N N 148 PHE C OXT sing N N 149 PHE CB CG sing N N 150 PHE CB HB2 sing N N 151 PHE CB HB3 sing N N 152 PHE CG CD1 doub Y N 153 PHE CG CD2 sing Y N 154 PHE CD1 CE1 sing Y N 155 PHE CD1 HD1 sing N N 156 PHE CD2 CE2 doub Y N 157 PHE CD2 HD2 sing N N 158 PHE CE1 CZ doub Y N 159 PHE CE1 HE1 sing N N 160 PHE CE2 CZ sing Y N 161 PHE CE2 HE2 sing N N 162 PHE CZ HZ sing N N 163 PHE OXT HXT sing N N 164 PRO N CA sing N N 165 PRO N CD sing N N 166 PRO N H sing N N 167 PRO CA C sing N N 168 PRO CA CB sing N N 169 PRO CA HA sing N N 170 PRO C O doub N N 171 PRO C OXT sing N N 172 PRO CB CG sing N N 173 PRO CB HB2 sing N N 174 PRO CB HB3 sing N N 175 PRO CG CD sing N N 176 PRO CG HG2 sing N N 177 PRO CG HG3 sing N N 178 PRO CD HD2 sing N N 179 PRO CD HD3 sing N N 180 PRO OXT HXT sing N N 181 THR N CA sing N N 182 THR N H sing N N 183 THR N H2 sing N N 184 THR CA C sing N N 185 THR CA CB sing N N 186 THR CA HA sing N N 187 THR C O doub N N 188 THR C OXT sing N N 189 THR CB OG1 sing N N 190 THR CB CG2 sing N N 191 THR CB HB sing N N 192 THR OG1 HG1 sing N N 193 THR CG2 HG21 sing N N 194 THR CG2 HG22 sing N N 195 THR CG2 HG23 sing N N 196 THR OXT HXT sing N N 197 TRP N CA sing N N 198 TRP N H sing N N 199 TRP N H2 sing N N 200 TRP CA C sing N N 201 TRP CA CB sing N N 202 TRP CA HA sing N N 203 TRP C O doub N N 204 TRP C OXT sing N N 205 TRP CB CG sing N N 206 TRP CB HB2 sing N N 207 TRP CB HB3 sing N N 208 TRP CG CD1 doub Y N 209 TRP CG CD2 sing Y N 210 TRP CD1 NE1 sing Y N 211 TRP CD1 HD1 sing N N 212 TRP CD2 CE2 doub Y N 213 TRP CD2 CE3 sing Y N 214 TRP NE1 CE2 sing Y N 215 TRP NE1 HE1 sing N N 216 TRP CE2 CZ2 sing Y N 217 TRP CE3 CZ3 doub Y N 218 TRP CE3 HE3 sing N N 219 TRP CZ2 CH2 doub Y N 220 TRP CZ2 HZ2 sing N N 221 TRP CZ3 CH2 sing Y N 222 TRP CZ3 HZ3 sing N N 223 TRP CH2 HH2 sing N N 224 TRP OXT HXT sing N N 225 TYR N CA sing N N 226 TYR N H sing N N 227 TYR N H2 sing N N 228 TYR CA C sing N N 229 TYR CA CB sing N N 230 TYR CA HA sing N N 231 TYR C O doub N N 232 TYR C OXT sing N N 233 TYR CB CG sing N N 234 TYR CB HB2 sing N N 235 TYR CB HB3 sing N N 236 TYR CG CD1 doub Y N 237 TYR CG CD2 sing Y N 238 TYR CD1 CE1 sing Y N 239 TYR CD1 HD1 sing N N 240 TYR CD2 CE2 doub Y N 241 TYR CD2 HD2 sing N N 242 TYR CE1 CZ doub Y N 243 TYR CE1 HE1 sing N N 244 TYR CE2 CZ sing Y N 245 TYR CE2 HE2 sing N N 246 TYR CZ OH sing N N 247 TYR OH HH sing N N 248 TYR OXT HXT sing N N 249 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DFN _pdbx_initial_refinement_model.details ? #