HEADER OXIDOREDUCTASE 21-MAY-09 3HJ8 TITLE CRYSTAL STRUCTURE DETERMINATION OF CATECHOL 1,2-DIOXYGENASE FROM TITLE 2 RHODOCOCCUS OPACUS 1CP IN COMPLEX WITH 4-CHLOROCATECHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,2-CTD; COMPND 5 EC: 1.13.11.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS OPACUS; SOURCE 3 ORGANISM_COMMON: NOCARDIA OPACA; SOURCE 4 ORGANISM_TAXID: 37919; SOURCE 5 STRAIN: 1CP KEYWDS BETA-SANDWICH, OXIDOREDUCTASE, AROMATIC HYDROCARBONS CATABOLISM, KEYWDS 2 DIOXYGENASE, IRON, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR I.MATERA,M.FERRARONI,F.BRIGANTI,A.SCOZZAFAVA REVDAT 4 01-NOV-23 3HJ8 1 REMARK REVDAT 3 01-NOV-17 3HJ8 1 REMARK REVDAT 2 19-MAY-10 3HJ8 1 JRNL REVDAT 1 12-JAN-10 3HJ8 0 JRNL AUTH I.MATERA,M.FERRARONI,M.KOLOMYTSEVA,L.GOLOVLEVA,A.SCOZZAFAVA, JRNL AUTH 2 F.BRIGANTI JRNL TITL CATECHOL 1,2-DIOXYGENASE FROM THE GRAM-POSITIVE RHODOCOCCUS JRNL TITL 2 OPACUS 1CP: QUANTITATIVE STRUCTURE/ACTIVITY RELATIONSHIP AND JRNL TITL 3 THE CRYSTAL STRUCTURES OF NATIVE ENZYME AND CATECHOLS JRNL TITL 4 ADDUCTS JRNL REF J.STRUCT.BIOL. V. 170 548 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20040374 JRNL DOI 10.1016/J.JSB.2009.12.023 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 8752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.376 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.284 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.367 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2103 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2864 ; 1.275 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 5.907 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;37.411 ;24.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 308 ;15.856 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;25.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1627 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1055 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1404 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.043 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 83 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1311 ; 0.521 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2073 ; 0.954 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 912 ; 1.277 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 2.067 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO PRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO PRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : 2.030 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.37 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3HGI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 39% PEG400, 0.1M HEPES, 0.1M MAGNESIUM REMARK 280 CHLORIDE, PH7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.78600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.75050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.78600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.75050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -6.56852 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.62849 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 313 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 PRO A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 ASP A 18 REMARK 465 LYS A 19 REMARK 465 PHE A 20 REMARK 465 LYS A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 182 -16.40 -45.46 REMARK 500 PRO A 199 115.42 -34.46 REMARK 500 PRO A 215 38.73 -89.15 REMARK 500 TRP A 244 15.32 53.51 REMARK 500 SER A 247 51.89 -144.61 REMARK 500 ASP A 260 79.88 -117.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6PL A 283 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 281 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 162 OH REMARK 620 2 HIS A 220 NE2 100.0 REMARK 620 3 HIS A 222 NE2 95.4 94.7 REMARK 620 4 4CL A 282 O7 95.4 108.8 151.9 REMARK 620 5 4CL A 282 O8 153.5 105.2 74.6 84.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4CL A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6PL A 283 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HGI RELATED DB: PDB REMARK 900 NATIVE ENZYME REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE MATCHES THE GENBANK DEPOSITION WITH ACCESSION CODE REMARK 999 CAA67941, IN WHICH ALL 280 RESIDUES ARE PRESENT. DBREF 3HJ8 A 11 280 UNP P95607 CATA_RHOOP 1 270 SEQADV 3HJ8 MET A 1 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 THR A 2 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 THR A 3 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 THR A 4 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 GLU A 5 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 SER A 6 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 PRO A 7 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 THR A 8 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 ALA A 9 UNP P95607 SEE REMARK 999 SEQADV 3HJ8 ALA A 10 UNP P95607 SEE REMARK 999 SEQRES 1 A 280 MET THR THR THR GLU SER PRO THR ALA ALA GLY SER GLY SEQRES 2 A 280 SER ALA ALA THR ASP LYS PHE LYS ALA GLU ARG ALA THR SEQRES 3 A 280 ALA ASP THR SER PRO GLU ARG LEU ALA ALA ILE ALA LYS SEQRES 4 A 280 ASP ALA LEU GLY ALA LEU ASN ASP VAL ILE LEU LYS HIS SEQRES 5 A 280 GLY VAL THR TYR PRO GLU TYR ARG VAL PHE LYS GLN TRP SEQRES 6 A 280 LEU ILE ASP VAL GLY GLU GLY GLY GLU TRP PRO LEU PHE SEQRES 7 A 280 LEU ASP VAL PHE ILE GLU HIS SER VAL GLU GLU VAL LEU SEQRES 8 A 280 ALA ARG SER ARG LYS GLY THR MET GLY SER ILE GLU GLY SEQRES 9 A 280 PRO TYR TYR ILE GLU ASN SER PRO GLU LEU PRO SER LYS SEQRES 10 A 280 CYS THR LEU PRO MET ARG GLU GLU ASP GLU LYS ILE THR SEQRES 11 A 280 PRO LEU VAL PHE SER GLY GLN VAL THR ASP LEU ASP GLY SEQRES 12 A 280 ASN GLY LEU ALA GLY ALA LYS VAL GLU LEU TRP HIS ALA SEQRES 13 A 280 ASP ASN ASP GLY TYR TYR SER GLN PHE ALA PRO HIS LEU SEQRES 14 A 280 PRO GLU TRP ASN LEU ARG GLY THR ILE ILE ALA ASP GLU SEQRES 15 A 280 GLU GLY ARG TYR GLU ILE THR THR ILE GLN PRO ALA PRO SEQRES 16 A 280 TYR GLN ILE PRO THR ASP GLY PRO THR GLY GLN PHE ILE SEQRES 17 A 280 GLU ALA GLN ASN GLY HIS PRO TRP ARG PRO ALA HIS LEU SEQRES 18 A 280 HIS LEU ILE VAL SER ALA PRO GLY LYS GLU SER VAL THR SEQRES 19 A 280 THR GLN LEU TYR PHE LYS GLY GLY GLU TRP ILE ASP SER SEQRES 20 A 280 ASP VAL ALA SER ALA THR LYS PRO GLU LEU ILE LEU ASP SEQRES 21 A 280 PRO LYS THR GLY ASP ASP GLY LYS ASN TYR VAL THR TYR SEQRES 22 A 280 ASN PHE VAL LEU ASP PRO ALA HET FE A 281 1 HET 4CL A 282 9 HET 6PL A 283 41 HETNAM FE FE (III) ION HETNAM 4CL 4-CHLOROBENZENE-1,2-DIOL HETNAM 6PL (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7- HETNAM 2 6PL [(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4- HETNAM 3 6PL PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE HETSYN 6PL 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE FORMUL 2 FE FE 3+ FORMUL 3 4CL C6 H5 CL O2 FORMUL 4 6PL C42 H85 N O8 P 1+ FORMUL 5 HOH *156(H2 O) HELIX 1 1 SER A 30 GLY A 53 1 24 HELIX 2 2 THR A 55 GLY A 72 1 18 HELIX 3 3 GLU A 74 ILE A 83 1 10 HELIX 4 4 ILE A 83 SER A 94 1 12 HELIX 5 5 GLU A 125 ILE A 129 5 5 HELIX 6 6 GLY A 202 ALA A 210 1 9 HELIX 7 7 LYS A 254 GLU A 256 5 3 SHEET 1 A 6 GLU A 113 PRO A 115 0 SHEET 2 A 6 ARG A 175 ILE A 179 1 O ILE A 179 N LEU A 114 SHEET 3 A 6 LYS A 150 TRP A 154 -1 N VAL A 151 O ILE A 178 SHEET 4 A 6 LEU A 221 SER A 226 -1 O ILE A 224 N GLU A 152 SHEET 5 A 6 VAL A 233 PHE A 239 -1 O VAL A 233 N VAL A 225 SHEET 6 A 6 ILE A 258 LEU A 259 1 O LEU A 259 N TYR A 238 SHEET 1 B 5 LYS A 117 THR A 119 0 SHEET 2 B 5 ARG A 185 ILE A 191 1 O THR A 189 N CYS A 118 SHEET 3 B 5 PRO A 131 THR A 139 -1 N PHE A 134 O ILE A 188 SHEET 4 B 5 ASN A 269 THR A 272 1 O ASN A 269 N VAL A 133 SHEET 5 B 5 LYS A 262 THR A 263 -1 N LYS A 262 O TYR A 270 SHEET 1 C 4 LYS A 117 THR A 119 0 SHEET 2 C 4 ARG A 185 ILE A 191 1 O THR A 189 N CYS A 118 SHEET 3 C 4 PRO A 131 THR A 139 -1 N PHE A 134 O ILE A 188 SHEET 4 C 4 PHE A 275 VAL A 276 1 O PHE A 275 N THR A 139 SHEET 1 D 2 TYR A 196 GLN A 197 0 SHEET 2 D 2 TRP A 216 ARG A 217 -1 O ARG A 217 N TYR A 196 SHEET 1 E 2 LYS A 230 GLU A 231 0 SHEET 2 E 2 ASP A 278 PRO A 279 -1 O ASP A 278 N GLU A 231 LINK OH TYR A 162 FE FE A 281 1555 1555 1.92 LINK NE2 HIS A 220 FE FE A 281 1555 1555 2.08 LINK NE2 HIS A 222 FE FE A 281 1555 1555 2.16 LINK FE FE A 281 O7 4CL A 282 1555 1555 1.96 LINK FE FE A 281 O8 4CL A 282 1555 1555 2.10 SITE 1 AC1 4 TYR A 162 HIS A 220 HIS A 222 4CL A 282 SITE 1 AC2 11 ASP A 80 VAL A 81 GLY A 104 PRO A 105 SITE 2 AC2 11 TYR A 106 TYR A 162 TYR A 196 ARG A 217 SITE 3 AC2 11 HIS A 220 HIS A 222 FE A 281 SITE 1 AC3 13 ALA A 25 THR A 26 ALA A 27 THR A 29 SITE 2 AC3 13 LEU A 45 ILE A 49 GLU A 58 VAL A 61 SITE 3 AC3 13 TRP A 65 PHE A 78 GLN A 206 PHE A 207 SITE 4 AC3 13 HOH A 329 CRYST1 89.572 37.501 74.917 90.00 95.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011164 0.000000 0.000983 0.00000 SCALE2 0.000000 0.026666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013400 0.00000