HEADER HYDROLASE 21-MAY-09 3HJH TITLE A RIGID N-TERMINAL CLAMP RESTRAINS THE MOTOR DOMAINS OF THE BACTERIAL TITLE 2 TRANSCRIPTION-REPAIR COUPLING FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION-REPAIR-COUPLING FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-470; COMPND 5 SYNONYM: TRCF, ATP-DEPENDENT HELICASE MFD; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B1114, JW1100, MFD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23D KEYWDS MFD, MUTATION FREQUENCY DECLINE, TRANSCRIPTION-COUPLED DNA REPAIR, KEYWDS 2 TRANSCRIPTION-REPAIR COUPLING FACTOR, ATP-BINDING, DNA DAMAGE, DNA KEYWDS 3 REPAIR, DNA-BINDING, HELICASE, HYDROLASE, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.MURPHY,P.GONG,K.RALTO,L.MANELYTE,N.SAVERY,K.THEIS REVDAT 4 06-SEP-23 3HJH 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3HJH 1 VERSN REVDAT 2 03-NOV-09 3HJH 1 JRNL REVDAT 1 20-OCT-09 3HJH 0 JRNL AUTH M.N.MURPHY,P.GONG,K.RALTO,L.MANELYTE,N.J.SAVERY,K.THEIS JRNL TITL AN N-TERMINAL CLAMP RESTRAINS THE MOTOR DOMAINS OF THE JRNL TITL 2 BACTERIAL TRANSCRIPTION-REPAIR COUPLING FACTOR MFD. JRNL REF NUCLEIC ACIDS RES. V. 37 6042 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19700770 JRNL DOI 10.1093/NAR/GKP680 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1788 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2503 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.71000 REMARK 3 B22 (A**2) : -2.07000 REMARK 3 B33 (A**2) : 3.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3652 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3356 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4961 ; 1.210 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7786 ; 0.794 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 6.418 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4065 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 751 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 819 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3984 ; 0.226 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2221 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 98 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2236 ; 3.144 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3613 ; 3.849 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1416 ; 3.378 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1348 ; 4.457 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 126 REMARK 3 RESIDUE RANGE : A 216 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): 68.2560 49.4980 15.5340 REMARK 3 T TENSOR REMARK 3 T11: 0.2675 T22: 0.2928 REMARK 3 T33: 0.0015 T12: 0.0010 REMARK 3 T13: 0.0199 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.2237 L22: 2.0305 REMARK 3 L33: 0.5120 L12: 0.6566 REMARK 3 L13: 0.1505 L23: 0.3399 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: 0.0036 S13: 0.0364 REMARK 3 S21: 0.0373 S22: 0.0273 S23: 0.1058 REMARK 3 S31: 0.0185 S32: 0.0207 S33: 0.0175 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1070 43.7280 -3.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.3574 T22: 0.3638 REMARK 3 T33: 0.2133 T12: -0.0279 REMARK 3 T13: 0.0208 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.2034 L22: 1.7782 REMARK 3 L33: 2.7093 L12: -0.3602 REMARK 3 L13: 0.9702 L23: -0.0644 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: 0.0726 S13: -0.0520 REMARK 3 S21: -0.2121 S22: 0.0498 S23: 0.0689 REMARK 3 S31: -0.0431 S32: -0.2195 S33: -0.1497 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 354 A 450 REMARK 3 ORIGIN FOR THE GROUP (A): 57.0200 83.9130 24.0660 REMARK 3 T TENSOR REMARK 3 T11: 0.4183 T22: 0.3674 REMARK 3 T33: 0.4470 T12: 0.0301 REMARK 3 T13: 0.0445 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.6793 L22: 1.4120 REMARK 3 L33: 1.1275 L12: -0.1128 REMARK 3 L13: -0.0236 L23: 0.3822 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: -0.0111 S13: 0.0147 REMARK 3 S21: 0.0589 S22: -0.0358 S23: 0.5735 REMARK 3 S31: -0.1403 S32: -0.2592 S33: 0.0917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : DOUBLY FOCUSING TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 79.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2EYQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 4000, 0.01 M CO(II)CL2, PH 4.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.03100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.03100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 451 REMARK 465 GLU A 452 REMARK 465 ARG A 453 REMARK 465 VAL A 454 REMARK 465 ALA A 455 REMARK 465 ARG A 456 REMARK 465 ARG A 457 REMARK 465 ARG A 458 REMARK 465 GLN A 459 REMARK 465 ASP A 460 REMARK 465 SER A 461 REMARK 465 ARG A 462 REMARK 465 ARG A 463 REMARK 465 THR A 464 REMARK 465 ILE A 465 REMARK 465 ASN A 466 REMARK 465 PRO A 467 REMARK 465 ASP A 468 REMARK 465 THR A 469 REMARK 465 LEU A 470 REMARK 465 LYS A 471 REMARK 465 LEU A 472 REMARK 465 ALA A 473 REMARK 465 ALA A 474 REMARK 465 ALA A 475 REMARK 465 LEU A 476 REMARK 465 GLU A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 140 O HOH A 777 2.02 REMARK 500 O ARG A 135 O HOH A 776 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 170 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 220 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 287 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 416 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 11 -37.75 -131.50 REMARK 500 LEU A 203 -142.84 -115.69 REMARK 500 LYS A 368 -82.99 -126.48 REMARK 500 ALA A 369 72.21 -117.33 REMARK 500 ASP A 420 -123.66 66.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 484 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 343 NE2 REMARK 620 2 HOH A 499 O 88.0 REMARK 620 3 HOH A 517 O 83.9 83.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 484 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EYQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL LENGTH MFD PROTEIN REMARK 900 RELATED ID: 2B2N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MFD RESIDUES 1 TO 333 DBREF 3HJH A 1 470 UNP P30958 MFD_ECOLI 1 470 SEQADV 3HJH LYS A 471 UNP P30958 EXPRESSION TAG SEQADV 3HJH LEU A 472 UNP P30958 EXPRESSION TAG SEQADV 3HJH ALA A 473 UNP P30958 EXPRESSION TAG SEQADV 3HJH ALA A 474 UNP P30958 EXPRESSION TAG SEQADV 3HJH ALA A 475 UNP P30958 EXPRESSION TAG SEQADV 3HJH LEU A 476 UNP P30958 EXPRESSION TAG SEQADV 3HJH GLU A 477 UNP P30958 EXPRESSION TAG SEQADV 3HJH HIS A 478 UNP P30958 EXPRESSION TAG SEQADV 3HJH HIS A 479 UNP P30958 EXPRESSION TAG SEQADV 3HJH HIS A 480 UNP P30958 EXPRESSION TAG SEQADV 3HJH HIS A 481 UNP P30958 EXPRESSION TAG SEQADV 3HJH HIS A 482 UNP P30958 EXPRESSION TAG SEQADV 3HJH HIS A 483 UNP P30958 EXPRESSION TAG SEQRES 1 A 483 MET PRO GLU GLN TYR ARG TYR THR LEU PRO VAL LYS ALA SEQRES 2 A 483 GLY GLU GLN ARG LEU LEU GLY GLU LEU THR GLY ALA ALA SEQRES 3 A 483 CYS ALA THR LEU VAL ALA GLU ILE ALA GLU ARG HIS ALA SEQRES 4 A 483 GLY PRO VAL VAL LEU ILE ALA PRO ASP MET GLN ASN ALA SEQRES 5 A 483 LEU ARG LEU HIS ASP GLU ILE SER GLN PHE THR ASP GLN SEQRES 6 A 483 MET VAL MET ASN LEU ALA ASP TRP GLU THR LEU PRO TYR SEQRES 7 A 483 ASP SER PHE SER PRO HIS GLN ASP ILE ILE SER SER ARG SEQRES 8 A 483 LEU SER THR LEU TYR GLN LEU PRO THR MET GLN ARG GLY SEQRES 9 A 483 VAL LEU ILE VAL PRO VAL ASN THR LEU MET GLN ARG VAL SEQRES 10 A 483 CYS PRO HIS SER PHE LEU HIS GLY HIS ALA LEU VAL MET SEQRES 11 A 483 LYS LYS GLY GLN ARG LEU SER ARG ASP ALA LEU ARG THR SEQRES 12 A 483 GLN LEU ASP SER ALA GLY TYR ARG HIS VAL ASP GLN VAL SEQRES 13 A 483 MET GLU HIS GLY GLU TYR ALA THR ARG GLY ALA LEU LEU SEQRES 14 A 483 ASP LEU PHE PRO MET GLY SER GLU LEU PRO TYR ARG LEU SEQRES 15 A 483 ASP PHE PHE ASP ASP GLU ILE ASP SER LEU ARG VAL PHE SEQRES 16 A 483 ASP VAL ASP SER GLN ARG THR LEU GLU GLU VAL GLU ALA SEQRES 17 A 483 ILE ASN LEU LEU PRO ALA HIS GLU PHE PRO THR ASP LYS SEQRES 18 A 483 ALA ALA ILE GLU LEU PHE ARG SER GLN TRP ARG ASP THR SEQRES 19 A 483 PHE GLU VAL LYS ARG ASP PRO GLU HIS ILE TYR GLN GLN SEQRES 20 A 483 VAL SER LYS GLY THR LEU PRO ALA GLY ILE GLU TYR TRP SEQRES 21 A 483 GLN PRO LEU PHE PHE SER GLU PRO LEU PRO PRO LEU PHE SEQRES 22 A 483 SER TYR PHE PRO ALA ASN THR LEU LEU VAL ASN THR GLY SEQRES 23 A 483 ASP LEU GLU THR SER ALA GLU ARG PHE GLN ALA ASP THR SEQRES 24 A 483 LEU ALA ARG PHE GLU ASN ARG GLY VAL ASP PRO MET ARG SEQRES 25 A 483 PRO LEU LEU PRO PRO GLN SER LEU TRP LEU ARG VAL ASP SEQRES 26 A 483 GLU LEU PHE SER GLU LEU LYS ASN TRP PRO ARG VAL GLN SEQRES 27 A 483 LEU LYS THR GLU HIS LEU PRO THR LYS ALA ALA ASN ALA SEQRES 28 A 483 ASN LEU GLY PHE GLN LYS LEU PRO ASP LEU ALA VAL GLN SEQRES 29 A 483 ALA GLN GLN LYS ALA PRO LEU ASP ALA LEU ARG LYS PHE SEQRES 30 A 483 LEU GLU THR PHE ASP GLY PRO VAL VAL PHE SER VAL GLU SEQRES 31 A 483 SER GLU GLY ARG ARG GLU ALA LEU GLY GLU LEU LEU ALA SEQRES 32 A 483 ARG ILE LYS ILE ALA PRO GLN ARG ILE MET ARG LEU ASP SEQRES 33 A 483 GLU ALA SER ASP ARG GLY ARG TYR LEU MET ILE GLY ALA SEQRES 34 A 483 ALA GLU HIS GLY PHE VAL ASP THR VAL ARG ASN LEU ALA SEQRES 35 A 483 LEU ILE CYS GLU SER ASP LEU LEU GLY GLU ARG VAL ALA SEQRES 36 A 483 ARG ARG ARG GLN ASP SER ARG ARG THR ILE ASN PRO ASP SEQRES 37 A 483 THR LEU LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 38 A 483 HIS HIS HET CO A 484 1 HETNAM CO COBALT (II) ION FORMUL 2 CO CO 2+ FORMUL 3 HOH *318(H2 O) HELIX 1 1 ALA A 25 HIS A 38 1 14 HELIX 2 2 ASP A 48 PHE A 62 1 15 HELIX 3 3 HIS A 84 LEU A 98 1 15 HELIX 4 4 PRO A 99 MET A 101 5 3 HELIX 5 5 VAL A 110 GLN A 115 1 6 HELIX 6 6 PRO A 119 HIS A 126 1 8 HELIX 7 7 SER A 137 ALA A 148 1 12 HELIX 8 8 ASP A 220 PHE A 235 1 16 HELIX 9 9 HIS A 243 LYS A 250 1 8 HELIX 10 10 GLY A 256 PHE A 265 5 10 HELIX 11 11 PRO A 271 PHE A 276 5 6 HELIX 12 12 ASP A 287 GLY A 307 1 21 HELIX 13 13 PRO A 316 LEU A 320 5 5 HELIX 14 14 ARG A 323 LYS A 332 1 10 HELIX 15 15 LEU A 371 PHE A 381 1 11 HELIX 16 16 LEU A 398 ALA A 403 1 6 HELIX 17 17 ARG A 404 LYS A 406 5 3 HELIX 18 18 ARG A 414 ALA A 418 5 5 HELIX 19 19 GLU A 446 LEU A 450 1 5 SHEET 1 A 7 VAL A 67 ASN A 69 0 SHEET 2 A 7 VAL A 105 PRO A 109 1 O ILE A 107 N MET A 68 SHEET 3 A 7 VAL A 42 ALA A 46 1 N LEU A 44 O VAL A 108 SHEET 4 A 7 LEU A 281 ASN A 284 1 O VAL A 283 N ILE A 45 SHEET 5 A 7 ARG A 336 LEU A 339 1 O LEU A 339 N ASN A 284 SHEET 6 A 7 GLN A 16 GLY A 20 1 N ARG A 17 O GLN A 338 SHEET 7 A 7 ASN A 350 ASN A 352 1 O ALA A 351 N LEU A 18 SHEET 1 B 2 LEU A 128 LYS A 131 0 SHEET 2 B 2 ALA A 208 LEU A 211 -1 O LEU A 211 N LEU A 128 SHEET 1 C 6 ARG A 151 HIS A 152 0 SHEET 2 C 6 GLU A 161 ARG A 165 1 O TYR A 162 N ARG A 151 SHEET 3 C 6 LEU A 168 LEU A 171 -1 O ASP A 170 N ALA A 163 SHEET 4 C 6 TYR A 180 PHE A 185 -1 O TYR A 180 N LEU A 171 SHEET 5 C 6 GLU A 188 ASP A 196 -1 O ARG A 193 N ARG A 181 SHEET 6 C 6 ARG A 201 VAL A 206 -1 O LEU A 203 N VAL A 194 SHEET 1 D 6 PHE A 355 GLN A 356 0 SHEET 2 D 6 PHE A 434 ASP A 436 -1 O VAL A 435 N GLN A 356 SHEET 3 D 6 LEU A 441 CYS A 445 -1 O LEU A 441 N ASP A 436 SHEET 4 D 6 VAL A 385 VAL A 389 1 N SER A 388 O ILE A 444 SHEET 5 D 6 ARG A 423 ILE A 427 1 O TYR A 424 N PHE A 387 SHEET 6 D 6 GLN A 410 ARG A 411 1 N GLN A 410 O ARG A 423 LINK NE2 HIS A 343 CO CO A 484 1555 1555 2.51 LINK CO CO A 484 O HOH A 499 1555 1555 2.06 LINK CO CO A 484 O HOH A 517 1555 1555 2.00 SITE 1 AC1 3 HIS A 343 HOH A 499 HOH A 517 CRYST1 84.062 157.650 35.964 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027806 0.00000